Wall clock time and date at job start Mon Mar 30 2020 04:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47393 * 2 1 4 4 C 1.35944 * 117.00125 * 180.02562 * 3 2 1 5 5 C 1.38799 * 119.96713 * 359.71724 * 4 3 2 6 6 C 1.37993 * 120.03558 * 179.77031 * 5 4 3 7 7 C 1.39087 * 119.96415 * 0.50682 * 6 5 4 8 8 N 1.39403 * 120.03138 * 179.72260 * 7 6 5 9 9 C 1.36829 * 120.00432 * 0.02687 * 8 7 6 10 10 H 1.07998 * 119.99690 * 24.42740 * 9 8 7 11 11 C 1.38759 * 120.00301 * 204.42961 * 9 8 7 12 12 N 1.31620 * 119.99647 * 15.78958 * 11 9 8 13 13 Si 1.86799 * 120.00043 * 195.79376 * 11 9 8 14 14 H 1.48503 * 109.47131 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47017 * 119.99884 * 13 11 9 16 16 H 1.48499 * 109.46899 * 239.99787 * 13 11 9 17 17 C 1.46504 * 119.99617 * 180.02562 * 8 7 6 18 18 C 1.47202 * 109.47044 * 83.71504 * 17 8 7 19 19 N 8.25908 * 142.96944 * 29.46301 * 2 1 3 20 20 C 1.39078 * 119.93118 * 359.75047 * 7 6 5 21 21 C 1.38000 * 119.96827 * 359.97438 * 20 7 6 22 22 H 1.09005 * 109.46910 * 59.99905 * 1 2 3 23 23 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47194 * 300.00397 * 1 2 3 25 25 H 1.09000 * 109.47194 * 239.99603 * 2 1 3 26 26 H 1.09001 * 109.47108 * 119.99620 * 2 1 3 27 27 H 1.08007 * 119.97861 * 0.02803 * 5 4 3 28 28 H 1.07999 * 120.01745 * 180.23495 * 6 5 4 29 29 H 0.96999 * 119.99680 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.47216 * 203.71131 * 17 8 7 31 31 H 1.08999 * 109.46996 * 323.71502 * 17 8 7 32 32 H 1.08005 * 120.01846 * 179.97438 * 20 7 6 33 33 H 1.07998 * 119.98477 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3541 1.5254 -0.0005 5 6 4.1989 0.4241 0.0049 6 6 5.5672 0.6033 -0.0005 7 6 6.0996 1.8882 -0.0006 8 7 7.4816 2.0707 -0.0001 9 6 8.3151 0.9856 -0.0001 10 1 7.9688 0.0387 -0.3872 11 6 9.6053 1.1017 0.4973 12 7 9.9326 2.1361 1.2425 13 14 10.8775 -0.2098 0.1091 14 1 10.2618 -1.2605 -0.7407 15 1 12.0190 0.4064 -0.6138 16 1 11.3629 -0.8182 1.3738 17 6 8.0416 3.4245 0.0003 18 6 8.0883 3.9358 1.3799 19 7 8.1233 4.3307 2.4465 20 6 5.2517 2.9906 -0.0006 21 6 3.8838 2.8083 -0.0010 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7851 -0.5735 0.0091 28 1 6.2243 -0.2538 -0.0001 29 1 10.8346 2.2174 1.5899 30 1 9.0501 3.4007 -0.4127 31 1 7.4152 4.0770 -0.6080 32 1 5.6637 3.9891 -0.0003 33 1 3.2252 3.6642 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615946793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:28 Heat of formation + Delta-G solvation = 14.922643 kcal Electronic energy + Delta-G solvation = -17133.692856 eV Core-core repulsion = 14352.826987 eV Total energy + Delta-G solvation = -2780.865869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84909 -39.37913 -37.26253 -36.16171 -33.71215 -32.48410 -31.68155 -29.78464 -28.67909 -25.65056 -24.55979 -22.85537 -21.77832 -19.42790 -19.10133 -18.43404 -17.68830 -16.78147 -16.53115 -16.06030 -15.67512 -15.29660 -14.52753 -14.38925 -14.16200 -14.04531 -13.91834 -13.58309 -13.35496 -13.03670 -12.93240 -12.88849 -12.71583 -12.52729 -12.20606 -12.11398 -11.92298 -11.69539 -11.23743 -10.99748 -10.13563 -9.70625 -8.35132 -8.05083 -5.69915 0.67889 0.92655 1.49321 1.50280 1.61009 2.02701 2.31867 2.41841 2.60976 2.95035 3.24902 3.35203 3.71893 4.11655 4.17011 4.20339 4.34103 4.48112 4.58084 4.65187 4.72179 4.86562 4.90388 5.03811 5.05944 5.27847 5.33278 5.41392 5.49662 5.72572 5.77196 5.97250 6.17470 6.74614 6.84329 7.12048 7.44004 7.73496 8.76611 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028087 B = 0.006070 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.650665 B = 4611.715945 C = 5382.716806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.338 6.338 4 C 0.021 3.979 5 C -0.149 4.149 6 C -0.183 4.183 7 C 0.169 3.831 8 N -0.476 5.476 9 C -0.312 4.312 10 H 0.099 0.901 11 C -0.015 4.015 12 N -0.910 5.910 13 Si 0.987 3.013 14 H -0.259 1.259 15 H -0.277 1.277 16 H -0.296 1.296 17 C 0.239 3.761 18 C 0.262 3.738 19 N -0.524 5.524 20 C -0.196 4.196 21 C -0.100 4.100 22 H 0.064 0.936 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.265 0.735 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 -3.517 -6.843 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.254 6.254 4 C -0.025 4.025 5 C -0.168 4.168 6 C -0.207 4.207 7 C 0.061 3.939 8 N -0.171 5.171 9 C -0.440 4.440 10 H 0.117 0.883 11 C -0.215 4.215 12 N -0.550 5.550 13 Si 0.813 3.187 14 H -0.183 1.183 15 H -0.203 1.203 16 H -0.223 1.223 17 C 0.112 3.888 18 C -0.056 4.056 19 N -0.205 5.205 20 C -0.220 4.220 21 C -0.119 4.119 22 H 0.083 0.917 23 H 0.116 0.884 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.135 0.865 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.715 -2.721 -5.196 12.215 hybrid contribution 1.240 -0.949 -0.037 1.562 sum -9.475 -3.670 -5.233 11.429 Atomic orbital electron populations 1.21770 0.91425 1.03911 1.03068 1.22887 0.96791 0.81806 1.01322 1.85947 1.18908 1.30009 1.90545 1.18672 0.82244 0.94106 1.07456 1.21050 0.93016 0.98190 1.04529 1.20498 0.94628 0.95753 1.09790 1.18302 0.84248 0.94253 0.97125 1.42356 1.00788 1.03796 1.70142 1.19754 0.93731 0.92215 1.38345 0.88306 1.25960 1.00564 0.99925 0.95022 1.69956 1.20478 1.32010 1.32513 0.84931 0.78172 0.78305 0.77324 1.18326 1.20289 1.22292 1.18752 1.02189 0.83888 0.84010 1.30181 0.89298 0.90000 0.96080 1.80917 1.12979 1.13469 1.13139 1.20484 0.92470 0.97452 1.11595 1.20185 0.94114 0.95016 1.02597 0.91706 0.88393 0.92057 0.91944 0.92522 0.84613 0.86505 0.92498 0.86835 0.86260 0.85360 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.05 1.08 5.46 71.98 0.39 1.47 16 3 O -0.34 -10.54 10.14 -92.92 -0.94 -11.49 16 4 C 0.02 0.75 6.69 22.54 0.15 0.90 16 5 C -0.15 -5.17 9.03 22.35 0.20 -4.97 16 6 C -0.18 -7.32 9.26 22.42 0.21 -7.11 16 7 C 0.17 7.11 6.47 38.34 0.25 7.36 16 8 N -0.48 -21.28 2.70 -521.64 -1.41 -22.69 16 9 C -0.31 -14.84 8.97 84.04 0.75 -14.09 16 10 H 0.10 4.57 6.23 -2.91 -0.02 4.55 16 11 C -0.02 -0.72 4.95 84.85 0.42 -0.30 16 12 N -0.91 -46.74 9.40 21.64 0.20 -46.54 16 13 Si 0.99 39.19 29.58 68.60 2.03 41.22 16 14 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 15 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 16 H -0.30 -12.27 7.11 99.48 0.71 -11.56 16 17 C 0.24 9.68 4.80 84.57 0.41 10.09 16 18 C 0.26 12.15 13.08 89.42 1.17 13.32 16 19 N -0.52 -26.52 18.55 20.03 0.37 -26.15 16 20 C -0.20 -7.35 9.09 22.41 0.20 -7.15 16 21 C -0.10 -3.49 9.98 22.35 0.22 -3.27 16 22 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.33 7.67 -2.39 -0.02 1.31 16 26 H 0.06 1.26 7.65 -2.39 -0.02 1.25 16 27 H 0.14 3.93 6.29 -2.91 -0.02 3.91 16 28 H 0.12 4.73 6.19 -2.91 -0.02 4.71 16 29 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 30 H 0.11 4.72 6.75 -2.39 -0.02 4.70 16 31 H 0.12 3.79 6.55 -2.39 -0.02 3.78 16 32 H 0.13 4.37 6.15 -2.91 -0.02 4.35 16 33 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -59.80 284.01 6.50 -53.30 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 1.13 Total: 17.78 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.12 Total: -5.44 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -0.83 Total: -95.38 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.94 Total: -11.49 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -59.80 6.50 -53.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615946793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.226 kcal (2) G-P(sol) polarization free energy of solvation -59.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds