Wall clock time and date at job start Mon Mar 30 2020 03:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47211 * 240.00226 * 3 2 1 5 5 H 1.48506 * 109.46840 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47262 * 119.99844 * 3 2 1 7 7 C 1.37881 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99848 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.51040 * 59.95148 * 9 7 2 11 11 C 1.53051 * 109.49085 * 180.02562 * 9 7 2 12 12 N 1.46953 * 109.36796 * 178.37143 * 11 9 7 13 13 C 1.46899 * 111.00107 * 176.81230 * 12 11 9 14 14 C 1.50701 * 109.47308 * 169.99917 * 13 12 11 15 15 C 1.38232 * 119.99886 * 269.90910 * 14 13 12 16 16 C 1.38243 * 120.00069 * 179.97438 * 15 14 13 17 17 C 1.38235 * 119.99602 * 0.09581 * 16 15 14 18 18 C 1.38230 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38234 * 120.00242 * 89.99856 * 14 13 12 20 20 C 1.46956 * 110.87785 * 300.67766 * 12 11 9 21 21 C 1.53047 * 109.36481 * 59.32393 * 20 12 11 22 22 N 1.46953 * 109.36291 * 301.59486 * 21 20 12 23 23 H 0.96992 * 120.00105 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.48934 * 58.39928 * 11 9 7 25 25 H 1.08998 * 109.48983 * 298.34169 * 11 9 7 26 26 H 1.09007 * 109.46882 * 49.99769 * 13 12 11 27 27 H 1.09000 * 109.47517 * 289.99869 * 13 12 11 28 28 H 1.08001 * 120.00365 * 0.06714 * 15 14 13 29 29 H 1.08000 * 119.99728 * 180.36512 * 16 15 14 30 30 H 1.08000 * 119.99297 * 179.97438 * 17 16 15 31 31 H 1.08001 * 120.00371 * 179.97438 * 18 17 16 32 32 H 1.08000 * 119.99729 * 359.97438 * 19 14 13 33 33 H 1.09003 * 109.48803 * 179.28651 * 20 12 11 34 34 H 1.08997 * 109.49431 * 299.35300 * 20 12 11 35 35 H 1.09001 * 109.49197 * 181.63158 * 21 20 12 36 36 H 1.08996 * 109.50956 * 61.57407 * 21 20 12 37 37 H 1.00896 * 111.00174 * 295.45357 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6232 -2.5570 -0.8897 11 6 2.2454 -3.6627 -0.0005 12 7 1.5083 -4.9335 0.0389 13 6 2.4269 -6.0774 -0.0362 14 6 1.6706 -7.3487 0.2519 15 6 1.5691 -7.8135 1.5498 16 6 0.8749 -8.9794 1.8142 17 6 0.2840 -9.6814 0.7803 18 6 0.3867 -9.2174 -0.5177 19 6 1.0800 -8.0510 -0.7819 20 6 0.6653 -5.0129 1.2399 21 6 -0.3290 -3.8494 1.2399 22 7 0.4081 -2.5787 1.2005 23 1 -0.4850 0.8400 -0.0004 24 1 2.8910 -3.5895 0.8747 25 1 2.8524 -3.6224 -0.9049 26 1 3.2224 -5.9534 0.6987 27 1 2.8600 -6.1308 -1.0350 28 1 2.0308 -7.2650 2.3575 29 1 0.7906 -9.3393 2.8290 30 1 -0.2580 -10.5925 0.9869 31 1 -0.0746 -9.7661 -1.3255 32 1 1.1602 -7.6884 -1.7960 33 1 0.1203 -5.9569 1.2399 34 1 1.2928 -4.9550 2.1293 35 1 -0.9360 -3.8897 2.1444 36 1 -0.9748 -3.9225 0.3650 37 1 0.9579 -2.4535 2.0372 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034411764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:03 Heat of formation + Delta-G solvation = 37.225937 kcal Electronic energy + Delta-G solvation = -17749.725578 eV Core-core repulsion = 15105.659947 eV Total energy + Delta-G solvation = -2644.065631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60637 -37.89696 -34.24273 -32.32063 -30.91194 -30.86305 -29.75667 -26.37481 -25.09027 -22.85482 -22.60226 -21.83389 -20.56054 -19.32496 -16.78736 -16.47027 -15.36250 -15.25012 -15.00697 -14.49647 -14.01047 -13.77278 -13.43728 -13.42800 -13.33261 -12.60784 -12.44837 -12.27626 -11.98448 -11.44238 -11.00888 -10.96293 -10.88813 -10.76062 -10.62848 -10.45011 -10.05742 -9.66186 -8.94201 -8.86811 -8.70655 -8.37878 -7.78578 -6.75646 -5.84787 -4.00143 1.36545 1.43404 3.36628 3.41809 3.43551 3.77444 4.45589 4.63975 4.84434 4.89636 5.00774 5.13133 5.31404 5.41760 5.52770 5.64183 5.70132 5.77610 5.82739 6.05209 6.08195 6.09726 6.11206 6.30582 6.34108 6.44538 6.48747 6.51663 6.71005 6.83448 6.87788 7.02137 7.39829 7.61241 7.76797 7.94488 8.26186 8.63644 8.97724 9.15522 9.68586 11.19591 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.052222 B = 0.004860 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.047568 B = 5760.072352 C = 5914.808626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.085 3.915 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.229 3.771 10 H 0.046 0.954 11 C 0.029 3.971 12 N -0.528 5.528 13 C 0.088 3.912 14 C -0.071 4.071 15 C -0.114 4.114 16 C -0.123 4.123 17 C -0.127 4.127 18 C -0.122 4.122 19 C -0.101 4.101 20 C 0.018 3.982 21 C 0.059 3.941 22 N -0.649 5.649 23 H 0.256 0.744 24 H 0.019 0.981 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -16.385 2.000 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.121 3.879 10 H 0.064 0.936 11 C -0.100 4.100 12 N -0.253 5.253 13 C -0.039 4.039 14 C -0.071 4.071 15 C -0.132 4.132 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.072 4.072 22 N -0.276 5.276 23 H 0.066 0.934 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.602 -15.892 1.295 15.956 hybrid contribution 1.762 0.215 1.033 2.054 sum 2.365 -15.677 2.327 16.024 Atomic orbital electron populations 1.70103 1.05665 1.25801 1.46393 1.24938 0.94606 0.98526 0.94164 0.86832 0.79744 0.83807 0.78456 1.20388 1.21355 1.20430 1.20874 0.92235 0.90236 1.54754 0.92936 1.19145 0.88701 0.89709 0.90378 0.93590 1.23146 0.97628 0.89799 0.99423 1.62368 1.22171 1.01761 1.38956 1.21148 0.93358 0.88178 1.01221 1.19877 0.98126 0.95855 0.93265 1.21092 0.99619 0.96323 0.96213 1.21078 0.98482 0.95579 0.98991 1.21093 1.00292 1.00043 0.93087 1.21134 0.99489 0.96700 0.96729 1.21064 0.97035 0.94607 0.99228 1.23016 0.96732 1.01308 0.90125 1.22075 0.95995 0.88302 1.00847 1.61046 1.32695 1.28642 1.05231 0.93368 0.96294 0.91590 0.94725 0.90292 0.86559 0.86362 0.86447 0.86253 0.85863 0.91393 0.96316 0.92542 0.91392 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.65 12.78 55.43 0.71 -23.94 16 2 C 0.08 2.36 5.39 -17.82 -0.10 2.26 16 3 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.54 -14.82 8.69 -34.44 -0.30 -15.12 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.23 5.75 2.45 -68.81 -0.17 5.58 16 10 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.03 0.62 4.80 -3.77 -0.02 0.60 16 12 N -0.53 -9.84 4.85 -235.91 -1.14 -10.99 16 13 C 0.09 1.37 5.44 -4.98 -0.03 1.34 16 14 C -0.07 -0.99 4.14 -104.62 -0.43 -1.43 16 15 C -0.11 -1.47 7.85 -39.58 -0.31 -1.79 16 16 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 17 C -0.13 -1.38 10.05 -39.59 -0.40 -1.77 16 18 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 19 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 20 C 0.02 0.33 4.64 -3.77 -0.02 0.31 16 21 C 0.06 1.19 6.72 -3.77 -0.03 1.17 16 22 N -0.65 -15.53 5.88 -107.82 -0.63 -16.17 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 27 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.07 1.16 5.85 -51.93 -0.30 0.85 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.32 7.46 8.79 -39.29 -0.35 7.12 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -29.13 300.25 -10.22 -39.35 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.68 Total: 5.20 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.97 Total: -14.13 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -1.07 Total: -51.09 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.13 -10.22 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.574 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds