Wall clock time and date at job start Mon Mar 30 2020 03:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47211 * 240.00226 * 3 2 1 5 5 H 1.48506 * 109.46840 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47262 * 119.99844 * 3 2 1 7 7 C 1.37881 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99848 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.51040 * 59.95148 * 9 7 2 11 11 C 1.53051 * 109.49085 * 180.02562 * 9 7 2 12 12 N 1.46953 * 109.36796 * 178.37143 * 11 9 7 13 13 C 1.46899 * 111.00107 * 176.81230 * 12 11 9 14 14 C 1.50701 * 109.47308 * 169.99917 * 13 12 11 15 15 C 1.38232 * 119.99886 * 269.90910 * 14 13 12 16 16 C 1.38243 * 120.00069 * 179.97438 * 15 14 13 17 17 C 1.38235 * 119.99602 * 0.09581 * 16 15 14 18 18 C 1.38230 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38234 * 120.00242 * 89.99856 * 14 13 12 20 20 C 1.46956 * 110.87785 * 300.67766 * 12 11 9 21 21 C 1.53047 * 109.36481 * 59.32393 * 20 12 11 22 22 N 1.46953 * 109.36291 * 301.59486 * 21 20 12 23 23 H 0.96992 * 120.00105 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.48934 * 58.39928 * 11 9 7 25 25 H 1.08998 * 109.48983 * 298.34169 * 11 9 7 26 26 H 1.09007 * 109.46882 * 49.99769 * 13 12 11 27 27 H 1.09000 * 109.47517 * 289.99869 * 13 12 11 28 28 H 1.08001 * 120.00365 * 0.06714 * 15 14 13 29 29 H 1.08000 * 119.99728 * 180.36512 * 16 15 14 30 30 H 1.08000 * 119.99297 * 179.97438 * 17 16 15 31 31 H 1.08001 * 120.00371 * 179.97438 * 18 17 16 32 32 H 1.08000 * 119.99729 * 359.97438 * 19 14 13 33 33 H 1.09003 * 109.48803 * 179.28651 * 20 12 11 34 34 H 1.08997 * 109.49431 * 299.35300 * 20 12 11 35 35 H 1.09001 * 109.49197 * 181.63158 * 21 20 12 36 36 H 1.08996 * 109.50956 * 61.57407 * 21 20 12 37 37 H 1.00896 * 111.00174 * 295.45357 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6232 -2.5570 -0.8897 11 6 2.2454 -3.6627 -0.0005 12 7 1.5083 -4.9335 0.0389 13 6 2.4269 -6.0774 -0.0362 14 6 1.6706 -7.3487 0.2519 15 6 1.5691 -7.8135 1.5498 16 6 0.8749 -8.9794 1.8142 17 6 0.2840 -9.6814 0.7803 18 6 0.3867 -9.2174 -0.5177 19 6 1.0800 -8.0510 -0.7819 20 6 0.6653 -5.0129 1.2399 21 6 -0.3290 -3.8494 1.2399 22 7 0.4081 -2.5787 1.2005 23 1 -0.4850 0.8400 -0.0004 24 1 2.8910 -3.5895 0.8747 25 1 2.8524 -3.6224 -0.9049 26 1 3.2224 -5.9534 0.6987 27 1 2.8600 -6.1308 -1.0350 28 1 2.0308 -7.2650 2.3575 29 1 0.7906 -9.3393 2.8290 30 1 -0.2580 -10.5925 0.9869 31 1 -0.0746 -9.7661 -1.3255 32 1 1.1602 -7.6884 -1.7960 33 1 0.1203 -5.9569 1.2399 34 1 1.2928 -4.9550 2.1293 35 1 -0.9360 -3.8897 2.1444 36 1 -0.9748 -3.9225 0.3650 37 1 0.9579 -2.4535 2.0372 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034411764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:03 Heat of formation + Delta-G solvation = 18.090710 kcal Electronic energy + Delta-G solvation = -17750.555344 eV Core-core repulsion = 15105.659947 eV Total energy + Delta-G solvation = -2644.895396 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76499 -39.31339 -35.84613 -34.23106 -32.20785 -31.83352 -31.43431 -27.81579 -26.94327 -24.40295 -23.71440 -23.24308 -21.80307 -21.04360 -18.61090 -17.58133 -16.84576 -16.50187 -16.24761 -16.17370 -15.50302 -15.34815 -15.09214 -14.97678 -14.25455 -14.13561 -13.71154 -13.65859 -13.43938 -12.86024 -12.79914 -12.65781 -12.54003 -12.18668 -11.96954 -11.83728 -11.77088 -11.58322 -10.94300 -10.51367 -9.79228 -9.71878 -9.24494 -8.57509 -7.96349 -6.19250 0.42621 0.52537 1.46418 1.47381 1.54822 2.47334 2.77933 3.21549 3.25917 3.77037 3.92507 3.95315 4.17260 4.21114 4.28969 4.33393 4.40422 4.48148 4.56130 4.60054 4.64689 4.74447 4.81350 4.84895 5.05163 5.10981 5.17174 5.20751 5.47614 5.58186 5.63708 5.73030 5.74996 6.07389 6.12647 6.17167 6.26592 6.63791 7.09562 7.12282 7.53887 9.07223 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.052222 B = 0.004860 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.047568 B = 5760.072352 C = 5914.808626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.036 3.964 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.053 0.947 9 C 0.232 3.768 10 H 0.001 0.999 11 C 0.045 3.955 12 N -0.539 5.539 13 C 0.093 3.907 14 C -0.090 4.090 15 C -0.125 4.125 16 C -0.125 4.125 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.116 4.116 20 C 0.034 3.966 21 C 0.061 3.939 22 N -0.668 5.668 23 H 0.256 0.744 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 -17.976 2.815 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.597 4.597 8 H 0.071 0.929 9 C 0.124 3.876 10 H 0.019 0.981 11 C -0.085 4.085 12 N -0.264 5.264 13 C -0.034 4.034 14 C -0.091 4.091 15 C -0.143 4.143 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.096 4.096 21 C -0.070 4.070 22 N -0.296 5.296 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.929 -17.505 2.110 17.656 hybrid contribution 1.620 0.593 0.763 1.886 sum 2.548 -16.911 2.873 17.342 Atomic orbital electron populations 1.70248 1.07209 1.26499 1.47610 1.25695 0.95374 1.01941 0.93762 0.85754 0.78411 0.79437 0.78685 1.19789 1.21204 1.19704 1.21245 0.92477 0.91578 1.54420 0.92903 1.18857 0.88729 0.90775 0.89237 0.98066 1.22765 0.96465 0.90012 0.99228 1.62275 1.22877 1.01689 1.39537 1.21126 0.93022 0.87737 1.01549 1.19783 0.99430 0.95593 0.94246 1.21198 1.00214 0.97217 0.95712 1.21398 0.97587 0.94838 1.00471 1.21489 0.99480 1.00688 0.92568 1.21441 0.98834 0.96101 0.97952 1.21204 0.97638 0.95495 0.99086 1.22820 0.96099 1.00651 0.90053 1.22065 0.96131 0.87880 1.00904 1.60822 1.32806 1.31299 1.04645 0.93550 0.96387 0.91811 0.94521 0.89958 0.86471 0.84022 0.83581 0.84026 0.85965 0.89851 0.95729 0.90463 0.93415 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.38 12.78 21.45 0.27 -52.11 16 2 C 0.04 2.03 5.39 84.66 0.46 2.49 16 3 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.56 -31.05 8.69 25.60 0.22 -30.83 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.23 12.03 2.45 44.17 0.11 12.14 16 10 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 11 C 0.04 1.93 4.80 86.31 0.41 2.34 16 12 N -0.54 -20.02 4.85 -900.29 -4.37 -24.39 16 13 C 0.09 2.81 5.44 85.56 0.47 3.27 16 14 C -0.09 -2.41 4.14 -19.87 -0.08 -2.49 16 15 C -0.12 -2.98 7.85 22.27 0.17 -2.81 16 16 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 17 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 18 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 19 C -0.12 -2.85 9.70 22.27 0.22 -2.63 16 20 C 0.03 1.17 4.64 86.31 0.40 1.57 16 21 C 0.06 2.46 6.72 86.31 0.58 3.04 16 22 N -0.67 -32.55 5.88 -495.02 -2.91 -35.45 16 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.04 1.09 8.02 -2.38 -0.02 1.07 16 27 H 0.08 2.39 8.09 -2.39 -0.02 2.38 16 28 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.08 2.70 5.85 -2.39 -0.01 2.69 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.32 15.13 8.79 -89.70 -0.79 14.34 16 Total: -1.00 -62.95 300.25 -1.10 -64.05 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.25 Total: 22.55 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 3.63 Total: -20.47 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -7.00 Total: -111.95 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -62.95 -1.10 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.140 kcal (2) G-P(sol) polarization free energy of solvation -62.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds