Wall clock time and date at job start Mon Mar 30 2020 04:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47231 * 2 1 4 4 C 1.50702 * 109.47275 * 239.99671 * 2 1 3 5 5 H 1.08007 * 119.99711 * 244.32049 * 4 2 1 6 6 C 1.37874 * 120.00271 * 64.31806 * 4 2 1 7 7 N 1.31515 * 119.99829 * 8.13820 * 6 4 2 8 8 Si 1.86794 * 120.00137 * 188.13748 * 6 4 2 9 9 H 1.48503 * 109.47219 * 60.00080 * 8 6 4 10 10 H 1.48502 * 109.47300 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47293 * 300.00141 * 8 6 4 12 12 N 1.46904 * 109.46973 * 119.99767 * 2 1 3 13 13 C 1.47165 * 111.00013 * 175.04061 * 12 2 1 14 14 C 1.52897 * 108.49717 * 52.18384 * 13 12 2 15 15 C 1.50702 * 109.96840 * 50.33747 * 14 13 12 16 16 C 1.39345 * 118.49792 * 163.15497 * 15 14 13 17 17 N 1.39677 * 119.90101 * 359.86761 * 16 15 14 18 18 C 1.38710 * 120.19498 * 179.84032 * 16 15 14 19 19 C 1.38129 * 119.74769 * 359.97438 * 18 16 15 20 20 C 1.38067 * 119.94451 * 0.07000 * 19 18 16 21 21 C 1.37698 * 121.70451 * 343.09872 * 15 14 13 22 22 C 1.46635 * 110.99542 * 298.01498 * 12 2 1 23 23 H 1.09002 * 109.47265 * 186.49467 * 1 2 3 24 24 H 1.08993 * 109.47695 * 306.50081 * 1 2 3 25 25 H 1.09007 * 109.46812 * 66.49878 * 1 2 3 26 26 H 0.97008 * 119.99889 * 3.59160 * 7 6 4 27 27 H 1.08998 * 109.62838 * 171.88932 * 13 12 2 28 28 H 1.09005 * 109.62935 * 292.48316 * 13 12 2 29 29 H 1.08999 * 109.38672 * 170.49282 * 14 13 12 30 30 H 1.08994 * 109.38631 * 290.28829 * 14 13 12 31 31 H 0.96999 * 120.00408 * 359.97438 * 17 16 15 32 32 H 0.97006 * 119.99805 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.12913 * 179.97438 * 18 16 15 34 34 H 1.07993 * 120.03256 * 180.09446 * 19 18 16 35 35 H 1.08003 * 119.72665 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.27561 * 49.42117 * 22 12 2 37 37 H 1.09003 * 109.26718 * 168.90013 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5945 -1.6275 -1.1327 6 6 1.7743 -0.1899 -2.4808 7 7 1.2324 1.0027 -2.5975 8 14 2.1944 -1.1785 -4.0090 9 1 1.4435 -2.4595 -3.9918 10 1 1.8220 -0.4020 -5.2188 11 1 3.6524 -1.4597 -4.0313 12 7 2.0196 -0.6925 1.1995 13 6 3.4859 -0.8158 1.1757 14 6 4.0852 0.5686 0.9267 15 6 3.4882 1.5676 1.8841 16 6 4.1403 2.7855 2.0664 17 7 5.3210 3.0542 1.3702 18 6 3.6200 3.7320 2.9367 19 6 2.4515 3.4633 3.6227 20 6 1.8079 2.2555 3.4410 21 6 2.3252 1.3043 2.5727 22 6 1.5885 -0.0006 2.4184 23 1 -0.3634 -1.0211 0.1162 24 1 -0.3634 0.6112 0.8260 25 1 -0.3633 0.4098 -0.9425 26 1 1.0622 1.5376 -1.8063 27 1 3.8366 -1.2000 2.1335 28 1 3.7834 -1.4931 0.3750 29 1 5.1645 0.5273 1.0731 30 1 3.8704 0.8771 -0.0964 31 1 5.6861 2.3933 0.7612 32 1 5.7763 3.9014 1.4963 33 1 4.1265 4.6754 3.0775 34 1 2.0416 4.1975 4.3002 35 1 0.8942 2.0493 3.9788 36 1 0.5178 0.1954 2.3612 37 1 1.7922 -0.6333 3.2823 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038032929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:03 Heat of formation + Delta-G solvation = 26.313077 kcal Electronic energy + Delta-G solvation = -18585.318361 eV Core-core repulsion = 15940.779513 eV Total energy + Delta-G solvation = -2644.538848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.04302 -37.19237 -34.46940 -33.43891 -31.11732 -30.20633 -28.67361 -27.45563 -25.04584 -23.65300 -22.87284 -21.26586 -20.85741 -18.56328 -16.90201 -16.44557 -16.25553 -15.15958 -14.89389 -14.44347 -14.08229 -13.69465 -13.62514 -13.15289 -12.99121 -12.63753 -11.79813 -11.59304 -11.48953 -11.32882 -11.15178 -11.07473 -10.87019 -10.59698 -10.30085 -10.25185 -10.08047 -9.96576 -9.76043 -8.42081 -8.35336 -8.09549 -7.23845 -7.14735 -6.30150 -4.00461 1.80275 1.98561 3.44046 3.47612 3.65322 4.11631 4.23026 4.54167 4.95090 5.21053 5.28850 5.41334 5.44230 5.63089 5.77319 5.83143 5.89594 6.02877 6.12694 6.23504 6.25525 6.43748 6.60049 6.60179 6.71329 6.81491 6.87797 6.90169 6.97348 7.10207 7.25037 7.28554 7.53547 7.78674 7.92151 7.99678 8.08591 8.43103 8.63599 8.91860 9.69270 11.05860 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026232 B = 0.007985 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.143162 B = 3505.903202 C = 3836.605987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.196 3.804 3 H 0.004 0.996 4 C -0.584 4.584 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 1.064 2.936 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.290 1.290 12 N -0.518 5.518 13 C 0.072 3.928 14 C -0.107 4.107 15 C -0.135 4.135 16 C 0.213 3.787 17 N -0.879 5.879 18 C -0.210 4.210 19 C -0.083 4.083 20 C -0.177 4.177 21 C -0.059 4.059 22 C 0.082 3.918 23 H 0.043 0.957 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.270 0.730 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.398 0.602 32 H 0.392 0.608 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 2.855 9.944 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.090 3.910 3 H 0.022 0.978 4 C -0.623 4.623 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.548 5.548 8 Si 0.893 3.107 9 H -0.214 1.214 10 H -0.210 1.210 11 H -0.217 1.217 12 N -0.240 5.240 13 C -0.056 4.056 14 C -0.146 4.146 15 C -0.139 4.139 16 C 0.109 3.891 17 N -0.419 5.419 18 C -0.233 4.233 19 C -0.102 4.102 20 C -0.198 4.198 21 C -0.061 4.061 22 C -0.047 4.047 23 H 0.063 0.937 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.227 0.773 32 H 0.220 0.780 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.144 2.347 8.274 10.021 hybrid contribution 0.734 1.119 1.521 2.026 sum 5.878 3.466 9.795 11.938 Atomic orbital electron populations 1.21918 0.98745 0.99544 0.99502 1.19415 0.91376 0.92964 0.87265 0.97827 1.21892 1.38252 1.10848 0.91272 0.92686 1.25691 0.94665 0.96996 1.01056 1.70780 1.40765 1.09592 1.33665 0.83620 0.76043 0.75269 0.75803 1.21436 1.21005 1.21666 1.62706 1.09636 1.49525 1.02113 1.21921 0.88348 0.94978 1.00396 1.20904 0.98116 0.96097 0.99470 1.19146 0.97268 0.95141 1.02392 1.17712 0.86836 0.93103 0.91444 1.42494 1.26533 1.21921 1.50934 1.20373 1.00071 0.99497 1.03330 1.20668 0.94641 0.96507 0.98349 1.20791 1.01557 0.94802 1.02619 1.20326 0.94030 0.97388 0.94400 1.21257 0.99143 0.89583 0.94710 0.93746 0.96565 0.92076 0.91862 0.93011 0.89756 0.92634 0.88984 0.77254 0.78022 0.87001 0.86825 0.86920 0.89838 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.55 37.16 0.32 -3.04 16 2 C 0.20 4.86 0.98 -68.86 -0.07 4.79 16 3 H 0.00 0.11 5.07 -51.93 -0.26 -0.15 16 4 C -0.58 -15.79 7.29 -34.44 -0.25 -16.04 16 5 H 0.05 1.50 6.55 -52.48 -0.34 1.15 16 6 C 0.02 0.56 5.16 -17.82 -0.09 0.47 16 7 N -0.91 -26.94 12.81 55.43 0.71 -26.23 16 8 Si 1.06 24.87 29.91 -169.99 -5.08 19.78 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.52 -11.17 4.88 -229.57 -1.12 -12.29 16 13 C 0.07 1.42 5.54 -3.73 -0.02 1.40 16 14 C -0.11 -2.04 4.32 -27.94 -0.12 -2.17 16 15 C -0.13 -2.54 5.06 -104.41 -0.53 -3.07 16 16 C 0.21 3.58 6.73 -83.70 -0.56 3.01 16 17 N -0.88 -11.99 8.97 32.46 0.29 -11.70 16 18 C -0.21 -3.23 9.89 -39.45 -0.39 -3.62 16 19 C -0.08 -1.26 10.04 -39.68 -0.40 -1.65 16 20 C -0.18 -2.92 9.64 -39.44 -0.38 -3.30 16 21 C -0.06 -1.10 5.25 -104.64 -0.55 -1.65 16 22 C 0.08 1.54 5.39 -5.15 -0.03 1.51 16 23 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.02 0.34 6.57 -51.93 -0.34 0.00 16 25 H 0.06 1.60 6.29 -51.93 -0.33 1.28 16 26 H 0.27 8.08 6.23 -40.82 -0.25 7.83 16 27 H 0.05 0.91 8.05 -51.93 -0.42 0.50 16 28 H 0.08 1.75 6.58 -51.93 -0.34 1.41 16 29 H 0.06 0.91 7.12 -51.93 -0.37 0.54 16 30 H 0.09 2.08 6.51 -51.93 -0.34 1.74 16 31 H 0.40 5.30 6.97 -40.82 -0.28 5.01 16 32 H 0.39 4.25 8.84 -40.82 -0.36 3.89 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 36 H 0.08 1.57 5.99 -51.93 -0.31 1.25 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 282.94 15.07 4.26 4.26 Total: -1.00 -30.08 282.94 -8.87 -38.95 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.86 Total: 10.58 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -3.07 Total: -23.36 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.12 Total: -50.22 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.08 -8.87 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038032929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.263 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds