Wall clock time and date at job start Mon Mar 30 2020 04:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47231 * 2 1 4 4 C 1.50702 * 109.47275 * 239.99671 * 2 1 3 5 5 H 1.08007 * 119.99711 * 244.32049 * 4 2 1 6 6 C 1.37874 * 120.00271 * 64.31806 * 4 2 1 7 7 N 1.31515 * 119.99829 * 8.13820 * 6 4 2 8 8 Si 1.86794 * 120.00137 * 188.13748 * 6 4 2 9 9 H 1.48503 * 109.47219 * 60.00080 * 8 6 4 10 10 H 1.48502 * 109.47300 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47293 * 300.00141 * 8 6 4 12 12 N 1.46904 * 109.46973 * 119.99767 * 2 1 3 13 13 C 1.47165 * 111.00013 * 175.04061 * 12 2 1 14 14 C 1.52897 * 108.49717 * 52.18384 * 13 12 2 15 15 C 1.50702 * 109.96840 * 50.33747 * 14 13 12 16 16 C 1.39345 * 118.49792 * 163.15497 * 15 14 13 17 17 N 1.39677 * 119.90101 * 359.86761 * 16 15 14 18 18 C 1.38710 * 120.19498 * 179.84032 * 16 15 14 19 19 C 1.38129 * 119.74769 * 359.97438 * 18 16 15 20 20 C 1.38067 * 119.94451 * 0.07000 * 19 18 16 21 21 C 1.37698 * 121.70451 * 343.09872 * 15 14 13 22 22 C 1.46635 * 110.99542 * 298.01498 * 12 2 1 23 23 H 1.09002 * 109.47265 * 186.49467 * 1 2 3 24 24 H 1.08993 * 109.47695 * 306.50081 * 1 2 3 25 25 H 1.09007 * 109.46812 * 66.49878 * 1 2 3 26 26 H 0.97008 * 119.99889 * 3.59160 * 7 6 4 27 27 H 1.08998 * 109.62838 * 171.88932 * 13 12 2 28 28 H 1.09005 * 109.62935 * 292.48316 * 13 12 2 29 29 H 1.08999 * 109.38672 * 170.49282 * 14 13 12 30 30 H 1.08994 * 109.38631 * 290.28829 * 14 13 12 31 31 H 0.96999 * 120.00408 * 359.97438 * 17 16 15 32 32 H 0.97006 * 119.99805 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.12913 * 179.97438 * 18 16 15 34 34 H 1.07993 * 120.03256 * 180.09446 * 19 18 16 35 35 H 1.08003 * 119.72665 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.27561 * 49.42117 * 22 12 2 37 37 H 1.09003 * 109.26718 * 168.90013 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5945 -1.6275 -1.1327 6 6 1.7743 -0.1899 -2.4808 7 7 1.2324 1.0027 -2.5975 8 14 2.1944 -1.1785 -4.0090 9 1 1.4435 -2.4595 -3.9918 10 1 1.8220 -0.4020 -5.2188 11 1 3.6524 -1.4597 -4.0313 12 7 2.0196 -0.6925 1.1995 13 6 3.4859 -0.8158 1.1757 14 6 4.0852 0.5686 0.9267 15 6 3.4882 1.5676 1.8841 16 6 4.1403 2.7855 2.0664 17 7 5.3210 3.0542 1.3702 18 6 3.6200 3.7320 2.9367 19 6 2.4515 3.4633 3.6227 20 6 1.8079 2.2555 3.4410 21 6 2.3252 1.3043 2.5727 22 6 1.5885 -0.0006 2.4184 23 1 -0.3634 -1.0211 0.1162 24 1 -0.3634 0.6112 0.8260 25 1 -0.3633 0.4098 -0.9425 26 1 1.0622 1.5376 -1.8063 27 1 3.8366 -1.2000 2.1335 28 1 3.7834 -1.4931 0.3750 29 1 5.1645 0.5273 1.0731 30 1 3.8704 0.8771 -0.0964 31 1 5.6861 2.3933 0.7612 32 1 5.7763 3.9014 1.4963 33 1 4.1265 4.6754 3.0775 34 1 2.0416 4.1975 4.3002 35 1 0.8942 2.0493 3.9788 36 1 0.5178 0.1954 2.3612 37 1 1.7922 -0.6333 3.2823 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038032929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:03 Heat of formation + Delta-G solvation = 6.360722 kcal Electronic energy + Delta-G solvation = -18586.183560 eV Core-core repulsion = 15940.779513 eV Total energy + Delta-G solvation = -2645.404047 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45017 -38.70998 -35.74887 -35.32497 -32.76967 -31.59318 -30.42243 -28.78185 -27.00891 -25.32480 -24.37638 -22.79435 -22.31357 -20.22769 -18.40669 -18.11508 -17.52110 -16.74514 -16.31917 -16.00665 -15.77225 -15.50740 -15.03600 -14.54451 -14.36419 -14.12024 -13.44624 -13.25809 -13.18256 -13.04983 -12.88951 -12.60647 -12.45407 -12.33379 -12.05712 -11.94159 -11.81062 -11.45836 -11.24711 -10.47505 -10.41550 -9.43023 -8.96481 -8.51859 -8.35549 -6.21623 0.51848 0.72921 1.54530 1.61880 1.80631 2.60023 2.91705 3.03630 3.24417 3.36138 3.91283 3.96548 4.17221 4.23831 4.32039 4.44144 4.56632 4.61210 4.66604 4.75868 4.83941 4.85051 4.88303 5.01208 5.07101 5.12494 5.22910 5.36740 5.47294 5.58090 5.66464 5.79524 5.99998 6.04423 6.13673 6.48677 6.58614 6.59162 6.80985 6.97442 7.55862 8.83890 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026232 B = 0.007985 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.143162 B = 3505.903202 C = 3836.605987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.207 3.793 3 H -0.024 1.024 4 C -0.586 4.586 5 H 0.049 0.951 6 C -0.028 4.028 7 N -0.936 5.936 8 Si 1.108 2.892 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.272 1.272 12 N -0.528 5.528 13 C 0.071 3.929 14 C -0.093 4.093 15 C -0.168 4.168 16 C 0.203 3.797 17 N -0.870 5.870 18 C -0.213 4.213 19 C -0.078 4.078 20 C -0.189 4.189 21 C -0.079 4.079 22 C 0.083 3.917 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.255 0.745 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.399 0.601 32 H 0.407 0.593 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 3.182 11.329 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 H -0.007 1.007 4 C -0.624 4.624 5 H 0.067 0.933 6 C -0.226 4.226 7 N -0.574 5.574 8 Si 0.931 3.069 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.198 1.198 12 N -0.249 5.249 13 C -0.057 4.057 14 C -0.131 4.131 15 C -0.173 4.173 16 C 0.098 3.902 17 N -0.411 5.411 18 C -0.236 4.236 19 C -0.097 4.097 20 C -0.209 4.209 21 C -0.081 4.081 22 C -0.045 4.045 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.228 0.772 32 H 0.237 0.763 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.149 0.851 36 H 0.099 0.901 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.829 2.678 9.685 11.617 hybrid contribution 0.559 1.062 1.190 1.691 sum 6.388 3.740 10.876 13.156 Atomic orbital electron populations 1.21774 0.98464 0.99663 0.98852 1.19124 0.91422 0.91380 0.88116 1.00678 1.22157 1.37470 1.10351 0.92427 0.93266 1.26985 0.94218 0.97118 1.04288 1.70901 1.42982 1.10645 1.32846 0.83041 0.77009 0.74396 0.72439 1.20006 1.21482 1.19756 1.62625 1.10772 1.49531 1.01995 1.21935 0.87539 0.95232 1.00985 1.20660 0.99501 0.95797 0.97189 1.19234 0.98410 0.96225 1.03415 1.17916 0.87553 0.92824 0.91918 1.42464 1.25716 1.22636 1.50270 1.20770 1.00237 1.00151 1.02458 1.21097 0.94104 0.96487 0.98008 1.21047 1.02387 0.94983 1.02499 1.20399 0.94290 0.97801 0.95613 1.21289 0.98974 0.90379 0.93900 0.93654 0.94590 0.94695 0.93441 0.90578 0.91475 0.90476 0.93437 0.77227 0.76329 0.84235 0.83494 0.85112 0.90123 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.55 71.98 0.62 -5.73 16 2 C 0.21 10.46 0.98 44.17 0.04 10.50 16 3 H -0.02 -1.36 5.07 -2.39 -0.01 -1.37 16 4 C -0.59 -32.31 7.29 25.60 0.19 -32.12 16 5 H 0.05 2.72 6.55 -2.91 -0.02 2.70 16 6 C -0.03 -1.57 5.16 84.65 0.44 -1.14 16 7 N -0.94 -56.85 12.81 21.45 0.27 -56.57 16 8 Si 1.11 50.39 29.91 68.60 2.05 52.44 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.53 -22.74 4.88 -880.23 -4.29 -27.03 16 13 C 0.07 2.81 5.54 86.22 0.48 3.29 16 14 C -0.09 -3.57 4.32 29.81 0.13 -3.45 16 15 C -0.17 -6.24 5.06 -19.73 -0.10 -6.34 16 16 C 0.20 6.53 6.73 38.27 0.26 6.79 16 17 N -0.87 -22.55 8.97 -51.22 -0.46 -23.01 16 18 C -0.21 -5.98 9.89 22.36 0.22 -5.76 16 19 C -0.08 -2.14 10.04 22.20 0.22 -1.91 16 20 C -0.19 -5.83 9.64 22.36 0.22 -5.61 16 21 C -0.08 -2.85 5.25 -19.88 -0.10 -2.96 16 22 C 0.08 3.04 5.39 85.59 0.46 3.50 16 23 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.04 1.57 6.57 -2.39 -0.02 1.55 16 25 H 0.03 1.87 6.29 -2.38 -0.01 1.85 16 26 H 0.26 15.92 6.23 -92.70 -0.58 15.35 16 27 H 0.08 2.60 8.05 -2.39 -0.02 2.58 16 28 H 0.07 2.82 6.58 -2.38 -0.02 2.81 16 29 H 0.08 2.51 7.12 -2.39 -0.02 2.49 16 30 H 0.05 2.24 6.51 -2.39 -0.02 2.22 16 31 H 0.40 10.32 6.97 -92.71 -0.65 9.68 16 32 H 0.41 7.99 8.84 -92.70 -0.82 7.17 16 33 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.08 2.95 5.99 -2.39 -0.01 2.93 16 37 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -65.55 282.94 0.46 -65.09 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.17 Total: 30.03 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 3.06 Total: -40.94 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -4.48 Total: -106.62 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -65.55 0.46 -65.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038032929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.450 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds