Wall clock time and date at job start Mon Mar 30 2020 03:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00390 * 2 1 4 4 H 1.48495 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47003 * 299.99941 * 3 2 1 6 6 H 1.48492 * 109.46898 * 59.99922 * 3 2 1 7 7 C 1.39875 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99354 * 197.96363 * 7 2 1 9 9 C 1.41134 * 119.99935 * 17.96015 * 7 2 1 10 10 C 1.40883 * 120.15381 * 204.60048 * 9 7 2 11 11 C 1.36342 * 119.83802 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.15851 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.83855 * 179.97438 * 12 11 10 14 14 C 1.46502 * 119.99657 * 180.27094 * 13 12 11 15 15 C 1.53115 * 109.52588 * 274.41244 * 14 13 12 16 16 C 1.53035 * 109.28026 * 182.44143 * 15 14 13 17 17 N 1.46846 * 109.52353 * 59.17800 * 16 15 14 18 18 C 1.46846 * 111.19923 * 298.25741 * 17 16 15 19 19 C 1.53043 * 109.51985 * 61.74451 * 18 17 16 20 20 C 1.39560 * 120.31441 * 0.25202 * 12 11 10 21 21 C 1.36345 * 120.16486 * 359.48082 * 20 12 11 22 22 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.08142 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.92056 * 179.97438 * 11 10 9 25 25 H 0.97001 * 120.00104 * 0.02562 * 13 12 11 26 26 H 1.09001 * 109.52353 * 34.60283 * 14 13 12 27 27 H 1.09002 * 109.50114 * 302.38174 * 15 14 13 28 28 H 1.08996 * 109.50492 * 62.50073 * 15 14 13 29 29 H 1.09003 * 109.45982 * 299.16813 * 16 15 14 30 30 H 1.08996 * 109.46730 * 179.19747 * 16 15 14 31 31 H 1.00896 * 111.00402 * 62.35845 * 17 16 15 32 32 H 1.08999 * 109.46680 * 301.72875 * 18 17 16 33 33 H 1.09002 * 109.45815 * 181.74878 * 18 17 16 34 34 H 1.09001 * 109.50168 * 180.88321 * 19 18 17 35 35 H 1.09000 * 109.50680 * 60.76042 * 19 18 17 36 36 H 1.08008 * 119.91957 * 179.72724 * 20 12 11 37 37 H 1.07998 * 120.08530 * 180.23441 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3462 -0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8844 2.3963 1.2124 7 6 2.0083 -1.2114 -0.0005 8 1 3.0488 -1.2342 0.2879 9 6 1.3541 -2.4037 -0.3780 10 6 1.8265 -3.6473 0.0857 11 6 1.1900 -4.7951 -0.2834 12 6 0.0733 -4.7401 -1.1188 13 7 -0.5696 -5.9133 -1.4910 14 6 -1.7385 -5.8600 -2.3725 15 6 -2.9994 -5.6232 -1.5368 16 6 -4.2232 -5.6293 -2.4557 17 7 -4.3095 -6.9206 -3.1495 18 6 -3.1311 -7.1488 -3.9954 19 6 -1.8747 -7.1881 -3.1224 20 6 -0.3967 -3.5121 -1.5865 21 6 0.2266 -2.3558 -1.2213 22 1 -0.4850 0.8401 0.0004 23 1 2.6908 -3.6914 0.7319 24 1 1.5512 -5.7493 0.0709 25 1 -0.2427 -6.7683 -1.1701 26 1 -1.6175 -5.0477 -3.0892 27 1 -3.0979 -6.4151 -0.7943 28 1 -2.9268 -4.6589 -1.0339 29 1 -4.1304 -4.8284 -3.1893 30 1 -5.1241 -5.4751 -1.8619 31 1 -4.4349 -7.6763 -2.4927 32 1 -3.0435 -6.3408 -4.7218 33 1 -3.2388 -8.0983 -4.5197 34 1 -0.9986 -7.3418 -3.7524 35 1 -1.9555 -8.0046 -2.4048 36 1 -1.2588 -3.4773 -2.2363 37 1 -0.1405 -1.4059 -1.5810 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038041192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:13 Heat of formation + Delta-G solvation = 13.987999 kcal Electronic energy + Delta-G solvation = -17495.450815 eV Core-core repulsion = 14850.377511 eV Total energy + Delta-G solvation = -2645.073303 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.16342 -37.52673 -34.79105 -33.00272 -30.86423 -30.27110 -29.43695 -27.94222 -24.53645 -22.99914 -22.75220 -21.29019 -20.35543 -19.65255 -17.21623 -16.45344 -15.90642 -15.08356 -14.80996 -14.68607 -14.24559 -13.79743 -13.40687 -13.20330 -12.70851 -12.33706 -12.26921 -12.12263 -11.75296 -11.61176 -11.42433 -11.22229 -11.04207 -10.84814 -10.62926 -10.39854 -10.37767 -9.68898 -9.30320 -9.23294 -8.55192 -8.44565 -7.49707 -6.64772 -6.39100 -4.03399 2.90201 3.09453 3.15377 3.20820 3.34578 4.05455 4.12785 4.37219 4.74985 4.80819 4.99129 5.12103 5.32386 5.39585 5.44278 5.66662 5.81491 5.82079 5.85062 5.99691 6.06210 6.24219 6.25896 6.32658 6.45708 6.92230 6.94475 6.96328 7.20054 7.28523 7.35552 7.56033 7.68799 7.83942 8.15203 8.29258 8.49624 8.70196 8.80173 9.06041 9.15112 10.37215 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038330 B = 0.004945 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.321764 B = 5661.264583 C = 6135.367679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.187 4.187 11 C -0.160 4.160 12 C 0.092 3.908 13 N -0.757 5.757 14 C 0.166 3.834 15 C -0.172 4.172 16 C 0.057 3.943 17 N -0.688 5.688 18 C 0.060 3.940 19 C -0.163 4.163 20 C -0.164 4.164 21 C -0.124 4.124 22 H 0.275 0.725 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.382 0.618 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.338 0.662 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -9.750 -5.061 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.182 4.182 12 C -0.004 4.004 13 N -0.391 5.391 14 C 0.058 3.942 15 C -0.213 4.213 16 C -0.073 4.073 17 N -0.316 5.316 18 C -0.070 4.070 19 C -0.203 4.203 20 C -0.186 4.186 21 C -0.144 4.144 22 H 0.086 0.914 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.214 0.786 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.566 -9.225 -5.678 12.667 hybrid contribution 1.192 0.301 1.007 1.589 sum -5.374 -8.923 -4.671 11.416 Atomic orbital electron populations 1.69863 1.07380 1.28510 1.37771 1.25793 0.94641 1.00886 0.92702 0.86373 0.81008 0.81602 0.78332 1.18625 1.19950 1.20264 1.19403 0.97941 0.91382 1.41104 0.90917 1.17499 0.92400 0.91988 0.90991 1.20543 1.02705 0.92628 1.04864 1.19809 0.97989 0.97018 1.03389 1.17352 0.95607 0.85745 1.01745 1.43957 1.32584 1.05733 1.56803 1.20564 0.85585 0.96550 0.91454 1.22804 0.96040 1.03265 0.99222 1.22031 0.97129 0.91811 0.96334 1.60686 1.39465 1.04779 1.26649 1.21986 0.87299 1.02101 0.95619 1.22552 1.00001 0.97974 0.99798 1.20109 1.01796 0.91909 1.04748 1.20940 0.98197 0.96430 0.98856 0.91383 0.89093 0.89711 0.78611 0.90996 0.92388 0.90619 0.90845 0.90837 0.84513 0.90756 0.90770 0.91131 0.92066 0.89389 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.58 10.97 55.54 0.61 -20.97 16 2 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.33 29.60 -169.99 -5.03 14.30 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.47 -12.81 9.03 -37.87 -0.34 -13.15 16 8 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.07 2.02 5.57 -106.80 -0.60 1.43 16 10 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 11 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 12 C 0.09 2.02 6.65 -83.69 -0.56 1.46 16 13 N -0.76 -13.14 5.22 -51.91 -0.27 -13.41 16 14 C 0.17 2.44 2.20 -67.81 -0.15 2.29 16 15 C -0.17 -2.41 5.61 -26.65 -0.15 -2.56 16 16 C 0.06 0.68 6.55 -3.84 -0.03 0.65 16 17 N -0.69 -7.37 6.87 -113.82 -0.78 -8.16 16 18 C 0.06 0.62 6.55 -3.83 -0.03 0.59 16 19 C -0.16 -1.87 5.55 -26.65 -0.15 -2.02 16 20 C -0.16 -3.84 8.82 -39.77 -0.35 -4.19 16 21 C -0.12 -3.28 8.64 -39.26 -0.34 -3.62 16 22 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 23 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 24 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.38 5.99 8.60 -40.82 -0.35 5.64 16 26 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.27 7.74 -51.93 -0.40 0.86 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.34 3.24 8.86 -39.29 -0.35 2.89 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.90 6.06 -52.48 -0.32 1.58 16 37 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -28.04 297.02 -9.97 -38.01 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.43 Total: 12.12 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -3.54 Total: -26.37 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.44 Total: -42.54 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.04 -9.97 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038041192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.000 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds