Wall clock time and date at job start Mon Mar 30 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00390 * 2 1 4 4 H 1.48495 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47003 * 299.99941 * 3 2 1 6 6 H 1.48492 * 109.46898 * 59.99922 * 3 2 1 7 7 C 1.39875 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99354 * 197.96363 * 7 2 1 9 9 C 1.41134 * 119.99935 * 17.96015 * 7 2 1 10 10 C 1.40883 * 120.15381 * 204.60048 * 9 7 2 11 11 C 1.36342 * 119.83802 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.15851 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.83855 * 179.97438 * 12 11 10 14 14 C 1.46502 * 119.99657 * 180.27094 * 13 12 11 15 15 C 1.53115 * 109.52588 * 274.41244 * 14 13 12 16 16 C 1.53035 * 109.28026 * 182.44143 * 15 14 13 17 17 N 1.46846 * 109.52353 * 59.17800 * 16 15 14 18 18 C 1.46846 * 111.19923 * 298.25741 * 17 16 15 19 19 C 1.53043 * 109.51985 * 61.74451 * 18 17 16 20 20 C 1.39560 * 120.31441 * 0.25202 * 12 11 10 21 21 C 1.36345 * 120.16486 * 359.48082 * 20 12 11 22 22 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.08142 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.92056 * 179.97438 * 11 10 9 25 25 H 0.97001 * 120.00104 * 0.02562 * 13 12 11 26 26 H 1.09001 * 109.52353 * 34.60283 * 14 13 12 27 27 H 1.09002 * 109.50114 * 302.38174 * 15 14 13 28 28 H 1.08996 * 109.50492 * 62.50073 * 15 14 13 29 29 H 1.09003 * 109.45982 * 299.16813 * 16 15 14 30 30 H 1.08996 * 109.46730 * 179.19747 * 16 15 14 31 31 H 1.00896 * 111.00402 * 62.35845 * 17 16 15 32 32 H 1.08999 * 109.46680 * 301.72875 * 18 17 16 33 33 H 1.09002 * 109.45815 * 181.74878 * 18 17 16 34 34 H 1.09001 * 109.50168 * 180.88321 * 19 18 17 35 35 H 1.09000 * 109.50680 * 60.76042 * 19 18 17 36 36 H 1.08008 * 119.91957 * 179.72724 * 20 12 11 37 37 H 1.07998 * 120.08530 * 180.23441 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3462 -0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8844 2.3963 1.2124 7 6 2.0083 -1.2114 -0.0005 8 1 3.0488 -1.2342 0.2879 9 6 1.3541 -2.4037 -0.3780 10 6 1.8265 -3.6473 0.0857 11 6 1.1900 -4.7951 -0.2834 12 6 0.0733 -4.7401 -1.1188 13 7 -0.5696 -5.9133 -1.4910 14 6 -1.7385 -5.8600 -2.3725 15 6 -2.9994 -5.6232 -1.5368 16 6 -4.2232 -5.6293 -2.4557 17 7 -4.3095 -6.9206 -3.1495 18 6 -3.1311 -7.1488 -3.9954 19 6 -1.8747 -7.1881 -3.1224 20 6 -0.3967 -3.5121 -1.5865 21 6 0.2266 -2.3558 -1.2213 22 1 -0.4850 0.8401 0.0004 23 1 2.6908 -3.6914 0.7319 24 1 1.5512 -5.7493 0.0709 25 1 -0.2427 -6.7683 -1.1701 26 1 -1.6175 -5.0477 -3.0892 27 1 -3.0979 -6.4151 -0.7943 28 1 -2.9268 -4.6589 -1.0339 29 1 -4.1304 -4.8284 -3.1893 30 1 -5.1241 -5.4751 -1.8619 31 1 -4.4349 -7.6763 -2.4927 32 1 -3.0435 -6.3408 -4.7218 33 1 -3.2388 -8.0983 -4.5197 34 1 -0.9986 -7.3418 -3.7524 35 1 -1.9555 -8.0046 -2.4048 36 1 -1.2588 -3.4773 -2.2363 37 1 -0.1405 -1.4059 -1.5810 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038041192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:12 Heat of formation + Delta-G solvation = -3.806487 kcal Electronic energy + Delta-G solvation = -17496.222442 eV Core-core repulsion = 14850.377511 eV Total energy + Delta-G solvation = -2645.844930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44382 -39.13944 -36.38841 -34.73923 -31.89061 -31.74621 -31.30214 -29.61315 -26.30566 -24.23698 -23.83683 -22.96251 -21.92712 -21.06405 -19.17803 -17.93966 -17.22258 -16.82560 -16.23089 -15.70371 -15.56537 -15.18231 -14.86039 -14.65096 -14.39104 -13.93104 -13.77232 -13.54744 -13.21790 -13.08559 -12.82761 -12.75898 -12.52761 -12.31570 -12.18779 -11.77591 -11.56902 -11.46794 -11.18149 -11.04954 -10.29236 -9.43493 -9.37675 -8.56982 -8.18298 -6.02534 1.08209 1.16057 1.39227 1.53539 1.56713 2.26415 2.80287 2.83794 3.42647 3.77555 3.81005 3.96534 4.16514 4.20694 4.40684 4.41653 4.47370 4.50068 4.64875 4.83331 4.95050 5.00114 5.03962 5.04917 5.12725 5.19571 5.25448 5.31910 5.43832 5.67642 5.79097 5.94282 6.04741 6.17052 6.37072 6.50126 6.65614 6.85755 7.06741 7.13134 7.30152 8.46877 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038330 B = 0.004945 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.321764 B = 5661.264583 C = 6135.367679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.196 4.196 11 C -0.167 4.167 12 C 0.113 3.887 13 N -0.747 5.747 14 C 0.159 3.841 15 C -0.164 4.164 16 C 0.064 3.936 17 N -0.685 5.685 18 C 0.063 3.937 19 C -0.151 4.151 20 C -0.172 4.172 21 C -0.144 4.144 22 H 0.282 0.718 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.395 0.605 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.348 0.652 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -11.516 -5.642 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.217 4.217 11 C -0.189 4.189 12 C 0.014 3.986 13 N -0.380 5.380 14 C 0.053 3.947 15 C -0.205 4.205 16 C -0.066 4.066 17 N -0.314 5.314 18 C -0.067 4.067 19 C -0.191 4.191 20 C -0.194 4.194 21 C -0.164 4.164 22 H 0.092 0.908 23 H 0.115 0.885 24 H 0.135 0.865 25 H 0.229 0.771 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.152 -11.050 -6.269 14.579 hybrid contribution 1.284 0.649 1.155 1.845 sum -5.869 -10.400 -5.114 12.991 Atomic orbital electron populations 1.69926 1.08812 1.29753 1.38582 1.26618 0.95432 1.04125 0.91784 0.85250 0.79407 0.76814 0.78728 1.18393 1.19110 1.19285 1.19626 0.98023 0.92798 1.43316 0.91414 1.17822 0.93528 0.93078 0.92358 1.20759 1.03096 0.92880 1.04921 1.20111 0.97948 0.97634 1.03233 1.17450 0.94759 0.86735 0.99702 1.44027 1.32772 1.04772 1.56460 1.20763 0.84719 0.98210 0.90987 1.22707 0.96783 1.01586 0.99459 1.21943 0.96371 0.92462 0.95835 1.60674 1.39573 1.04468 1.26694 1.22033 0.86318 1.03178 0.95220 1.22469 1.00877 0.95924 0.99826 1.20227 1.02156 0.91903 1.05153 1.20863 0.98971 0.96667 0.99894 0.90754 0.88525 0.86501 0.77096 0.92925 0.91700 0.93908 0.91611 0.89793 0.83358 0.91378 0.88348 0.90812 0.90649 0.88070 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.63 10.97 21.82 0.24 -46.39 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 40.53 29.60 68.60 2.03 42.56 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.51 -28.89 9.03 23.38 0.21 -28.68 16 8 H 0.07 3.76 7.91 -2.91 -0.02 3.73 16 9 C 0.03 1.98 5.57 -21.27 -0.12 1.86 16 10 C -0.20 -9.99 9.74 22.48 0.22 -9.77 16 11 C -0.17 -7.41 9.82 22.15 0.22 -7.20 16 12 C 0.11 4.83 6.65 38.67 0.26 5.09 16 13 N -0.75 -24.35 5.22 -318.16 -1.66 -26.01 16 14 C 0.16 4.40 2.20 45.07 0.10 4.50 16 15 C -0.16 -4.37 5.61 30.64 0.17 -4.20 16 16 C 0.06 1.41 6.55 86.33 0.57 1.97 16 17 N -0.69 -12.61 6.87 -514.00 -3.53 -16.14 16 18 C 0.06 1.08 6.55 86.33 0.57 1.65 16 19 C -0.15 -2.98 5.55 30.65 0.17 -2.80 16 20 C -0.17 -8.22 8.82 22.15 0.20 -8.02 16 21 C -0.14 -7.91 8.64 22.48 0.19 -7.71 16 22 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 23 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 24 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 25 H 0.39 11.11 8.60 -92.71 -0.80 10.32 16 26 H 0.05 1.69 6.43 -2.39 -0.02 1.67 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.42 7.74 -2.39 -0.02 1.40 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.35 5.40 8.86 -89.70 -0.79 4.61 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 4.45 6.06 -2.91 -0.02 4.43 16 37 H 0.10 5.67 6.16 -2.91 -0.02 5.65 16 Total: -1.00 -62.30 297.02 -0.25 -62.55 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.52 Total: 34.58 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 3.19 Total: -51.15 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -4.95 Total: -88.54 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -62.30 -0.25 -62.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038041192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.744 kcal (2) G-P(sol) polarization free energy of solvation -62.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds