Wall clock time and date at job start Mon Mar 30 2020 03:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47547 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46828 * 300.00012 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99987 * 3 2 1 7 7 C 1.39945 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 162.28211 * 7 2 1 9 9 C 1.41396 * 119.99955 * 342.55190 * 7 2 1 10 10 C 1.40718 * 120.24347 * 155.03187 * 9 7 2 11 11 C 1.37611 * 119.74343 * 179.74262 * 10 9 7 12 12 C 1.38636 * 120.25279 * 0.53117 * 11 10 9 13 13 C 1.50688 * 119.75457 * 179.73893 * 12 11 10 14 14 N 1.46900 * 109.47501 * 269.97816 * 13 12 11 15 15 C 1.46959 * 110.99697 * 46.20054 * 14 13 12 16 16 C 1.53050 * 109.36419 * 183.18982 * 15 14 13 17 17 N 1.46964 * 109.36452 * 301.59841 * 16 15 14 18 18 C 1.46953 * 110.87772 * 59.31907 * 17 16 15 19 19 C 1.46956 * 111.00195 * 169.99734 * 14 13 12 20 20 C 1.38637 * 120.49719 * 359.71753 * 12 11 10 21 21 C 1.37624 * 120.24713 * 0.02562 * 20 12 11 22 22 H 0.96997 * 120.00216 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.12485 * 359.96923 * 10 9 7 24 24 H 1.08003 * 119.87558 * 180.27307 * 11 10 9 25 25 H 1.09006 * 109.47315 * 29.98278 * 13 12 11 26 26 H 1.09002 * 109.47420 * 149.97397 * 13 12 11 27 27 H 1.09003 * 109.48735 * 303.15530 * 15 14 13 28 28 H 1.08997 * 109.49153 * 63.22254 * 15 14 13 29 29 H 1.08997 * 109.48812 * 181.63014 * 16 15 14 30 30 H 1.08998 * 109.50866 * 61.57271 * 16 15 14 31 31 H 1.00896 * 110.99984 * 183.19093 * 17 16 15 32 32 H 1.09003 * 109.48487 * 180.71374 * 18 17 16 33 33 H 1.09001 * 109.51129 * 60.66094 * 18 17 16 34 34 H 1.09004 * 109.48940 * 296.78343 * 19 14 13 35 35 H 1.08995 * 109.48900 * 56.82476 * 19 14 13 36 36 H 1.07997 * 119.87614 * 179.97438 * 20 12 11 37 37 H 1.08005 * 120.12321 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2852 9 6 1.3498 -2.4085 0.3661 10 6 1.8190 -3.6486 -0.1052 11 6 1.1738 -4.8071 0.2624 12 6 0.0589 -4.7549 1.0848 13 6 -0.6425 -6.0301 1.4755 14 7 -1.6872 -6.3364 0.4892 15 6 -1.1780 -6.1859 -0.8811 16 6 -2.3147 -6.4355 -1.8752 17 7 -2.8594 -7.7841 -1.6639 18 6 -3.3685 -7.9346 -0.2936 19 6 -2.2318 -7.6849 0.7004 20 6 -0.4153 -3.5384 1.5507 21 6 0.2173 -2.3675 1.2002 22 1 -0.4850 0.8400 0.0004 23 1 2.6845 -3.6912 -0.7499 24 1 1.5348 -5.7604 -0.0945 25 1 0.0787 -6.8468 1.5064 26 1 -1.0960 -5.9086 2.4592 27 1 -0.7918 -5.1756 -1.0166 28 1 -0.3792 -6.9071 -1.0536 29 1 -1.9327 -6.3528 -2.8926 30 1 -3.1017 -5.6973 -1.7211 31 1 -3.5768 -7.9945 -2.3414 32 1 -3.7547 -8.9448 -0.1582 33 1 -4.1675 -7.2136 -0.1209 34 1 -1.4448 -8.4232 0.5459 35 1 -2.6134 -7.7677 1.7180 36 1 -1.2849 -3.5093 2.1905 37 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:55 Heat of formation + Delta-G solvation = 22.427149 kcal Electronic energy + Delta-G solvation = -17652.074769 eV Core-core repulsion = 15007.367415 eV Total energy + Delta-G solvation = -2644.707354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.96547 -37.34348 -34.59445 -33.28996 -30.74380 -30.12622 -29.20424 -27.25616 -24.91084 -23.18668 -22.54485 -20.98398 -19.87100 -19.29236 -17.28585 -16.66112 -15.34110 -14.86247 -14.62433 -14.37811 -14.29832 -13.96610 -13.73595 -13.30321 -13.04592 -12.49831 -12.04989 -11.92393 -11.53778 -11.46403 -11.10135 -11.06400 -11.02161 -10.67930 -10.53622 -10.43215 -10.23131 -9.55109 -9.36616 -9.12093 -8.44641 -7.88497 -7.44076 -7.25447 -6.75864 -4.35007 2.72988 3.06515 3.08055 3.12441 3.16568 3.93053 4.30717 4.34587 4.70765 5.11987 5.29850 5.39582 5.53759 5.65261 5.70335 5.74880 5.85765 5.95064 6.02605 6.07668 6.25701 6.31420 6.37973 6.46969 6.52969 6.96526 7.02937 7.07529 7.30125 7.31784 7.37160 7.52987 7.58245 7.62305 7.88814 8.06117 8.14941 8.30463 8.65162 8.89900 8.98040 10.18373 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.040608 B = 0.005051 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.348616 B = 5541.699868 C = 5692.299922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.227 4.227 11 C -0.084 4.084 12 C -0.215 4.215 13 C 0.120 3.880 14 N -0.535 5.535 15 C 0.059 3.941 16 C 0.058 3.942 17 N -0.694 5.694 18 C 0.061 3.939 19 C 0.054 3.946 20 C -0.080 4.080 21 C -0.168 4.168 22 H 0.280 0.720 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.337 0.663 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 -8.876 -0.422 10.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.246 4.246 11 C -0.102 4.102 12 C -0.217 4.217 13 C -0.006 4.006 14 N -0.260 5.260 15 C -0.069 4.069 16 C -0.072 4.072 17 N -0.325 5.325 18 C -0.069 4.069 19 C -0.074 4.074 20 C -0.099 4.099 21 C -0.187 4.187 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.154 0.846 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.725 -8.660 -0.217 9.867 hybrid contribution 0.106 0.723 -0.251 0.772 sum -4.619 -7.937 -0.468 9.195 Atomic orbital electron populations 1.69836 1.07577 1.29088 1.35211 1.25904 0.94697 1.01287 0.92260 0.86298 0.81032 0.81061 0.78552 1.18410 1.20009 1.19707 1.19632 0.98054 0.91271 1.40294 0.90475 1.17627 0.91108 0.91970 0.88325 1.20946 1.03867 0.92900 1.06904 1.20375 0.95713 0.96262 0.97900 1.18877 1.00521 0.93098 1.09157 1.20737 0.90724 0.94870 0.94269 1.62317 1.35360 1.24708 1.03635 1.22198 0.94817 1.02626 0.87217 1.22065 0.97474 0.88442 0.99202 1.60552 1.39150 1.28502 1.04286 1.21958 0.96080 1.00145 0.88724 1.22127 0.96684 0.90280 0.98355 1.20503 0.97752 0.92453 0.99151 1.21310 0.99404 0.96734 1.01271 0.90940 0.89132 0.89925 0.95935 0.91664 0.88386 0.95014 0.90684 0.94366 0.84582 0.90952 0.94494 0.94728 0.90938 0.89454 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 10.95 55.55 0.61 -19.90 16 2 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 3 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.11 2.98 5.57 -106.83 -0.60 2.39 16 10 C -0.23 -5.54 9.80 -38.87 -0.38 -5.92 16 11 C -0.08 -1.86 7.80 -39.66 -0.31 -2.17 16 12 C -0.21 -4.66 4.16 -104.33 -0.43 -5.09 16 13 C 0.12 2.20 5.43 -4.98 -0.03 2.17 16 14 N -0.54 -9.29 4.85 -235.91 -1.14 -10.43 16 15 C 0.06 1.04 4.64 -3.77 -0.02 1.03 16 16 C 0.06 0.86 6.72 -3.76 -0.03 0.83 16 17 N -0.69 -9.06 6.90 -113.63 -0.78 -9.85 16 18 C 0.06 0.76 6.72 -3.77 -0.03 0.74 16 19 C 0.05 0.78 5.58 -3.77 -0.02 0.75 16 20 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 21 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 22 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 23 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 24 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 25 H 0.02 0.40 8.02 -51.93 -0.42 -0.02 16 26 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.10 2.01 5.85 -51.93 -0.30 1.71 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.34 3.58 8.90 -39.29 -0.35 3.23 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.12 3.15 6.16 -52.48 -0.32 2.82 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -27.24 296.98 -10.45 -37.70 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.59 Total: 7.41 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -2.99 Total: -23.01 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -1.32 Total: -40.18 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.24 -10.45 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.125 kcal (2) G-P(sol) polarization free energy of solvation -27.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds