Wall clock time and date at job start Mon Mar 30 2020 03:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47547 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46828 * 300.00012 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99987 * 3 2 1 7 7 C 1.39945 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 162.28211 * 7 2 1 9 9 C 1.41396 * 119.99955 * 342.55190 * 7 2 1 10 10 C 1.40718 * 120.24347 * 155.03187 * 9 7 2 11 11 C 1.37611 * 119.74343 * 179.74262 * 10 9 7 12 12 C 1.38636 * 120.25279 * 0.53117 * 11 10 9 13 13 C 1.50688 * 119.75457 * 179.73893 * 12 11 10 14 14 N 1.46900 * 109.47501 * 269.97816 * 13 12 11 15 15 C 1.46959 * 110.99697 * 46.20054 * 14 13 12 16 16 C 1.53050 * 109.36419 * 183.18982 * 15 14 13 17 17 N 1.46964 * 109.36452 * 301.59841 * 16 15 14 18 18 C 1.46953 * 110.87772 * 59.31907 * 17 16 15 19 19 C 1.46956 * 111.00195 * 169.99734 * 14 13 12 20 20 C 1.38637 * 120.49719 * 359.71753 * 12 11 10 21 21 C 1.37624 * 120.24713 * 0.02562 * 20 12 11 22 22 H 0.96997 * 120.00216 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.12485 * 359.96923 * 10 9 7 24 24 H 1.08003 * 119.87558 * 180.27307 * 11 10 9 25 25 H 1.09006 * 109.47315 * 29.98278 * 13 12 11 26 26 H 1.09002 * 109.47420 * 149.97397 * 13 12 11 27 27 H 1.09003 * 109.48735 * 303.15530 * 15 14 13 28 28 H 1.08997 * 109.49153 * 63.22254 * 15 14 13 29 29 H 1.08997 * 109.48812 * 181.63014 * 16 15 14 30 30 H 1.08998 * 109.50866 * 61.57271 * 16 15 14 31 31 H 1.00896 * 110.99984 * 183.19093 * 17 16 15 32 32 H 1.09003 * 109.48487 * 180.71374 * 18 17 16 33 33 H 1.09001 * 109.51129 * 60.66094 * 18 17 16 34 34 H 1.09004 * 109.48940 * 296.78343 * 19 14 13 35 35 H 1.08995 * 109.48900 * 56.82476 * 19 14 13 36 36 H 1.07997 * 119.87614 * 179.97438 * 20 12 11 37 37 H 1.08005 * 120.12321 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2852 9 6 1.3498 -2.4085 0.3661 10 6 1.8190 -3.6486 -0.1052 11 6 1.1738 -4.8071 0.2624 12 6 0.0589 -4.7549 1.0848 13 6 -0.6425 -6.0301 1.4755 14 7 -1.6872 -6.3364 0.4892 15 6 -1.1780 -6.1859 -0.8811 16 6 -2.3147 -6.4355 -1.8752 17 7 -2.8594 -7.7841 -1.6639 18 6 -3.3685 -7.9346 -0.2936 19 6 -2.2318 -7.6849 0.7004 20 6 -0.4153 -3.5384 1.5507 21 6 0.2173 -2.3675 1.2002 22 1 -0.4850 0.8400 0.0004 23 1 2.6845 -3.6912 -0.7499 24 1 1.5348 -5.7604 -0.0945 25 1 0.0787 -6.8468 1.5064 26 1 -1.0960 -5.9086 2.4592 27 1 -0.7918 -5.1756 -1.0166 28 1 -0.3792 -6.9071 -1.0536 29 1 -1.9327 -6.3528 -2.8926 30 1 -3.1017 -5.6973 -1.7211 31 1 -3.5768 -7.9945 -2.3414 32 1 -3.7547 -8.9448 -0.1582 33 1 -4.1675 -7.2136 -0.1209 34 1 -1.4448 -8.4232 0.5459 35 1 -2.6134 -7.7677 1.7180 36 1 -1.2849 -3.5093 2.1905 37 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:55 Heat of formation + Delta-G solvation = 4.637682 kcal Electronic energy + Delta-G solvation = -17652.846178 eV Core-core repulsion = 15007.367415 eV Total energy + Delta-G solvation = -2645.478764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38611 -39.00178 -36.14559 -34.92176 -32.13866 -31.71740 -31.04708 -28.86393 -26.51564 -24.40318 -24.06158 -22.86210 -21.57184 -20.59746 -19.21233 -17.81827 -17.19236 -16.37470 -15.93684 -15.80596 -15.63894 -15.50901 -15.12503 -14.93687 -14.50328 -14.19297 -13.79290 -13.50415 -13.06731 -13.04121 -12.73622 -12.66281 -12.34991 -12.19192 -12.17236 -11.76972 -11.71872 -11.34942 -11.21533 -10.99614 -9.52762 -9.36970 -9.30065 -9.04395 -8.63317 -6.33329 0.93500 1.14468 1.37895 1.48917 1.53284 2.20842 2.66896 3.15854 3.28980 3.77229 4.01231 4.08525 4.20640 4.30769 4.38275 4.46691 4.48025 4.59458 4.60987 4.67287 4.83524 4.87825 4.96376 5.05807 5.07489 5.14215 5.17451 5.38579 5.46097 5.70989 5.88571 5.96910 6.07618 6.11724 6.27977 6.30111 6.39066 6.50763 6.71149 6.94703 7.04068 8.33590 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.040608 B = 0.005051 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.348616 B = 5541.699868 C = 5692.299922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.502 4.502 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.241 4.241 11 C -0.080 4.080 12 C -0.200 4.200 13 C 0.124 3.876 14 N -0.546 5.546 15 C 0.064 3.936 16 C 0.063 3.937 17 N -0.694 5.694 18 C 0.062 3.938 19 C 0.052 3.948 20 C -0.085 4.085 21 C -0.190 4.190 22 H 0.287 0.713 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.085 0.915 30 H 0.028 0.972 31 H 0.354 0.646 32 H 0.102 0.898 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 -10.336 -0.346 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.079 3.921 10 C -0.261 4.261 11 C -0.098 4.098 12 C -0.202 4.202 13 C -0.002 4.002 14 N -0.271 5.271 15 C -0.064 4.064 16 C -0.066 4.066 17 N -0.326 5.326 18 C -0.068 4.068 19 C -0.076 4.076 20 C -0.104 4.104 21 C -0.210 4.210 22 H 0.098 0.902 23 H 0.113 0.887 24 H 0.124 0.876 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.173 0.827 32 H 0.120 0.880 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.438 -10.149 -0.148 11.515 hybrid contribution 0.251 0.998 -0.266 1.063 sum -5.187 -9.151 -0.414 10.527 Atomic orbital electron populations 1.69889 1.09033 1.30437 1.35840 1.26746 0.95452 1.04491 0.91196 0.85176 0.79417 0.76239 0.78967 1.18198 1.19010 1.18857 1.19867 0.98233 0.92590 1.42462 0.90811 1.17951 0.91932 0.93024 0.89223 1.21133 1.04440 0.93196 1.07328 1.20605 0.95443 0.96468 0.97310 1.19246 0.99757 0.94104 1.07067 1.20698 0.91257 0.93169 0.95108 1.62289 1.34656 1.27142 1.03055 1.22048 0.95797 1.00298 0.88298 1.21933 0.96375 0.89401 0.98936 1.60519 1.40083 1.26828 1.05207 1.22021 0.95142 1.01751 0.87842 1.22267 0.97090 0.88183 1.00033 1.20711 0.97991 0.92418 0.99283 1.21260 1.00284 0.96983 1.02473 0.90193 0.88720 0.87579 0.94782 0.90398 0.91995 0.95392 0.89647 0.95408 0.82705 0.87979 0.94902 0.94782 0.89203 0.88003 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.14 10.95 21.83 0.24 -43.90 16 2 C 0.04 1.84 5.15 85.26 0.44 2.28 16 3 Si 0.98 38.82 29.59 68.60 2.03 40.85 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.50 -27.71 9.05 23.46 0.21 -27.50 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.08 4.48 5.57 -21.29 -0.12 4.36 16 10 C -0.24 -12.08 9.80 22.73 0.22 -11.86 16 11 C -0.08 -3.51 7.80 22.22 0.17 -3.34 16 12 C -0.20 -8.54 4.16 -19.68 -0.08 -8.62 16 13 C 0.12 4.28 5.43 85.55 0.46 4.74 16 14 N -0.55 -17.82 4.85 -900.30 -4.37 -22.19 16 15 C 0.06 2.17 4.64 86.31 0.40 2.57 16 16 C 0.06 1.79 6.72 86.31 0.58 2.37 16 17 N -0.69 -16.10 6.90 -513.43 -3.54 -19.64 16 18 C 0.06 1.34 6.72 86.31 0.58 1.92 16 19 C 0.05 1.32 5.58 86.31 0.48 1.81 16 20 C -0.09 -4.03 9.67 22.22 0.21 -3.81 16 21 C -0.19 -10.26 8.70 22.73 0.20 -10.07 16 22 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 23 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 24 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 25 H 0.03 1.11 8.02 -2.38 -0.02 1.09 16 26 H 0.08 2.50 8.08 -2.39 -0.02 2.49 16 27 H 0.06 2.54 5.85 -2.39 -0.01 2.53 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.35 6.39 8.90 -89.70 -0.80 5.60 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 Total: -1.00 -59.93 296.98 -1.63 -61.56 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.25 Total: 28.47 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 3.77 Total: -45.15 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -7.68 Total: -85.73 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -59.93 -1.63 -61.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.197 kcal (2) G-P(sol) polarization free energy of solvation -59.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds