Wall clock time and date at job start Mon Mar 30 2020 03:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99648 * 2 1 4 4 H 1.48498 * 109.47129 * 269.99308 * 3 2 1 5 5 H 1.48498 * 109.47309 * 29.99631 * 3 2 1 6 6 H 1.48500 * 109.47097 * 149.99775 * 3 2 1 7 7 C 1.39944 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99398 * 163.55295 * 7 2 1 9 9 C 1.41387 * 120.00488 * 343.55117 * 7 2 1 10 10 C 1.40736 * 120.24596 * 334.15747 * 9 7 2 11 11 C 1.37593 * 119.74793 * 180.02562 * 10 9 7 12 12 C 1.38652 * 120.24904 * 359.97020 * 11 10 9 13 13 C 1.38610 * 120.50196 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.24902 * 0.02700 * 13 12 11 15 15 C 1.50701 * 120.13084 * 179.97438 * 14 13 12 16 16 N 1.46906 * 109.47232 * 260.00020 * 15 14 13 17 17 C 1.46957 * 110.99762 * 46.19414 * 16 15 14 18 18 C 1.53056 * 109.36021 * 183.18939 * 17 16 15 19 19 N 1.46958 * 109.36441 * 301.60253 * 18 17 16 20 20 C 1.46952 * 110.88047 * 59.32215 * 19 18 17 21 21 C 1.46950 * 111.00063 * 170.00095 * 16 15 14 22 22 H 0.96997 * 120.00444 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.12626 * 0.02562 * 10 9 7 24 24 H 1.08003 * 119.87432 * 180.25385 * 11 10 9 25 25 H 1.08003 * 119.75089 * 180.02562 * 12 11 10 26 26 H 1.08004 * 119.87804 * 179.97438 * 13 12 11 27 27 H 1.09001 * 109.46653 * 19.99647 * 15 14 13 28 28 H 1.08999 * 109.47262 * 139.99482 * 15 14 13 29 29 H 1.08997 * 109.49559 * 303.16077 * 17 16 15 30 30 H 1.09002 * 109.48645 * 63.23012 * 17 16 15 31 31 H 1.09000 * 109.48652 * 181.63469 * 18 17 16 32 32 H 1.08995 * 109.50288 * 61.58244 * 18 17 16 33 33 H 1.00897 * 110.99732 * 183.18877 * 19 18 17 34 34 H 1.09004 * 109.48867 * 180.71164 * 20 19 18 35 35 H 1.09000 * 109.50665 * 60.65371 * 20 19 18 36 36 H 1.09009 * 109.48672 * 296.77811 * 21 16 15 37 37 H 1.09000 * 109.48995 * 56.81937 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4403 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0548 -1.2312 -0.2643 9 6 1.3444 -2.4113 0.3478 10 6 0.2135 -2.3790 1.1848 11 6 -0.4240 -3.5523 1.5166 12 6 0.0435 -4.7632 1.0291 13 6 1.1563 -4.8070 0.2040 14 6 1.8104 -3.6459 -0.1402 15 6 3.0205 -3.6967 -1.0370 16 7 4.2388 -3.6033 -0.2215 17 6 4.1652 -4.5011 0.9397 18 6 5.4148 -4.3161 1.8040 19 7 6.6108 -4.5986 0.9982 20 6 6.6843 -3.7008 -0.1629 21 6 5.4348 -3.8858 -1.0272 22 1 -0.4851 0.8400 -0.0004 23 1 -0.1526 -1.4368 1.5652 24 1 -1.2945 -3.5295 2.1555 25 1 -0.4634 -5.6793 1.2944 26 1 1.5120 -5.7559 -0.1697 27 1 3.0241 -4.6364 -1.5893 28 1 2.9880 -2.8631 -1.7385 29 1 3.2783 -4.2640 1.5272 30 1 4.1096 -5.5344 0.5974 31 1 5.3762 -5.0017 2.6505 32 1 5.4562 -3.2898 2.1689 33 1 7.4476 -4.5345 1.5584 34 1 7.5712 -3.9380 -0.7504 35 1 6.7401 -2.6674 0.1791 36 1 5.3935 -4.9122 -1.3919 37 1 5.4731 -3.2004 -1.8739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:57 Heat of formation + Delta-G solvation = 25.295584 kcal Electronic energy + Delta-G solvation = -18201.103504 eV Core-core repulsion = 15556.520535 eV Total energy + Delta-G solvation = -2644.582970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.84149 -37.29192 -34.07138 -33.56920 -30.65931 -30.06587 -29.33550 -26.41980 -25.08020 -23.02231 -22.85326 -20.91879 -19.59336 -19.11095 -17.09130 -16.52156 -15.32778 -14.72024 -14.50994 -14.25918 -14.16791 -14.07338 -13.57752 -13.23424 -12.93136 -12.52802 -12.02184 -11.59493 -11.41874 -11.21476 -11.05370 -10.98047 -10.90786 -10.62422 -10.49297 -10.30447 -10.25481 -9.46984 -9.23749 -9.10184 -8.33099 -7.64531 -7.31567 -7.25662 -6.70082 -4.27506 2.80957 2.98252 3.10354 3.15797 3.28441 3.98492 4.42019 4.56775 4.73382 5.26173 5.44257 5.54654 5.67215 5.76601 5.79655 5.87861 6.02544 6.11485 6.19787 6.23673 6.28064 6.48237 6.50484 6.52810 6.66550 6.90459 7.13931 7.16939 7.30705 7.42020 7.46267 7.66590 7.71422 7.81492 7.98930 8.12247 8.18822 8.36293 8.72662 8.98439 9.05175 10.24431 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.009460 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.288320 B = 2959.070480 C = 4070.872557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.446 4.446 8 H 0.091 0.909 9 C 0.129 3.871 10 C -0.165 4.165 11 C -0.106 4.106 12 C -0.246 4.246 13 C -0.085 4.085 14 C -0.201 4.201 15 C 0.126 3.874 16 N -0.526 5.526 17 C 0.064 3.936 18 C 0.058 3.942 19 N -0.694 5.694 20 C 0.061 3.939 21 C 0.055 3.945 22 H 0.278 0.722 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.014 0.986 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.336 0.664 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.032 0.968 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.402 -3.586 0.673 9.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.109 0.891 9 C 0.126 3.874 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.266 4.266 13 C -0.104 4.104 14 C -0.203 4.203 15 C 0.000 4.000 16 N -0.251 5.251 17 C -0.065 4.065 18 C -0.071 4.071 19 N -0.325 5.325 20 C -0.069 4.069 21 C -0.074 4.074 22 H 0.089 0.911 23 H 0.134 0.866 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.032 0.968 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.939 -3.438 0.463 8.664 hybrid contribution 0.386 0.772 0.106 0.870 sum 8.325 -2.666 0.569 8.760 Atomic orbital electron populations 1.69839 1.07594 1.29013 1.35808 1.25971 0.94641 1.01337 0.92440 0.86377 0.80750 0.80859 0.79109 1.19656 1.20377 1.18451 1.19746 0.98205 0.90418 1.39132 0.89091 1.17374 0.90414 0.91505 0.88061 1.21352 0.99295 0.96600 1.01157 1.20674 0.98511 0.93467 0.99799 1.20287 1.01731 0.96126 1.08426 1.20380 0.96099 0.95661 0.98259 1.19447 1.00478 0.93713 1.06648 1.20640 0.86881 0.98454 0.94000 1.62236 1.01904 1.52293 1.08627 1.22092 0.97483 0.93945 0.92948 1.22051 0.90220 0.99500 0.95363 1.60560 1.05308 1.55477 1.11105 1.21963 0.97649 0.94740 0.92547 1.22113 0.90418 0.99100 0.95723 0.91089 0.86606 0.89725 0.89827 0.90004 0.96771 0.90533 0.89019 0.95386 0.91034 0.94268 0.84776 0.91110 0.94361 0.95025 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.56 10.97 55.55 0.61 -19.95 16 2 C 0.07 1.83 5.16 -17.34 -0.09 1.74 16 3 Si 0.90 18.87 29.59 -169.99 -5.03 13.84 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.45 -11.52 8.18 -37.75 -0.31 -11.83 16 8 H 0.09 2.33 6.85 -52.49 -0.36 1.97 16 9 C 0.13 3.35 5.56 -106.83 -0.59 2.76 16 10 C -0.16 -4.27 8.69 -38.87 -0.34 -4.61 16 11 C -0.11 -2.51 10.02 -39.66 -0.40 -2.91 16 12 C -0.25 -5.56 10.05 -39.29 -0.39 -5.96 16 13 C -0.09 -1.91 8.68 -39.66 -0.34 -2.25 16 14 C -0.20 -4.71 3.76 -103.91 -0.39 -5.10 16 15 C 0.13 2.63 4.61 -4.97 -0.02 2.60 16 16 N -0.53 -10.04 4.59 -235.90 -1.08 -11.12 16 17 C 0.06 1.17 4.89 -3.76 -0.02 1.15 16 18 C 0.06 0.90 6.72 -3.76 -0.03 0.87 16 19 N -0.69 -9.61 6.90 -113.64 -0.78 -10.40 16 20 C 0.06 0.84 6.72 -3.77 -0.03 0.82 16 21 C 0.06 0.88 5.58 -3.77 -0.02 0.86 16 22 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 23 H 0.12 3.12 6.21 -52.48 -0.33 2.79 16 24 H 0.08 1.81 8.06 -52.48 -0.42 1.39 16 25 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 26 H 0.08 1.67 8.03 -52.48 -0.42 1.25 16 27 H 0.01 0.28 7.94 -51.93 -0.41 -0.13 16 28 H 0.08 1.67 7.34 -51.93 -0.38 1.28 16 29 H 0.09 1.91 6.22 -51.93 -0.32 1.59 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.34 3.80 8.90 -39.29 -0.35 3.45 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 294.88 15.07 4.44 4.44 Total: -1.00 -26.98 294.88 -10.33 -37.30 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.51 Total: 7.74 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -2.97 Total: -21.86 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -1.26 Total: -41.47 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.98 -10.33 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.599 kcal (2) G-P(sol) polarization free energy of solvation -26.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds