Wall clock time and date at job start Mon Mar 30 2020 03:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99648 * 2 1 4 4 H 1.48498 * 109.47129 * 269.99308 * 3 2 1 5 5 H 1.48498 * 109.47309 * 29.99631 * 3 2 1 6 6 H 1.48500 * 109.47097 * 149.99775 * 3 2 1 7 7 C 1.39944 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99398 * 163.55295 * 7 2 1 9 9 C 1.41387 * 120.00488 * 343.55117 * 7 2 1 10 10 C 1.40736 * 120.24596 * 334.15747 * 9 7 2 11 11 C 1.37593 * 119.74793 * 180.02562 * 10 9 7 12 12 C 1.38652 * 120.24904 * 359.97020 * 11 10 9 13 13 C 1.38610 * 120.50196 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.24902 * 0.02700 * 13 12 11 15 15 C 1.50701 * 120.13084 * 179.97438 * 14 13 12 16 16 N 1.46906 * 109.47232 * 260.00020 * 15 14 13 17 17 C 1.46957 * 110.99762 * 46.19414 * 16 15 14 18 18 C 1.53056 * 109.36021 * 183.18939 * 17 16 15 19 19 N 1.46958 * 109.36441 * 301.60253 * 18 17 16 20 20 C 1.46952 * 110.88047 * 59.32215 * 19 18 17 21 21 C 1.46950 * 111.00063 * 170.00095 * 16 15 14 22 22 H 0.96997 * 120.00444 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.12626 * 0.02562 * 10 9 7 24 24 H 1.08003 * 119.87432 * 180.25385 * 11 10 9 25 25 H 1.08003 * 119.75089 * 180.02562 * 12 11 10 26 26 H 1.08004 * 119.87804 * 179.97438 * 13 12 11 27 27 H 1.09001 * 109.46653 * 19.99647 * 15 14 13 28 28 H 1.08999 * 109.47262 * 139.99482 * 15 14 13 29 29 H 1.08997 * 109.49559 * 303.16077 * 17 16 15 30 30 H 1.09002 * 109.48645 * 63.23012 * 17 16 15 31 31 H 1.09000 * 109.48652 * 181.63469 * 18 17 16 32 32 H 1.08995 * 109.50288 * 61.58244 * 18 17 16 33 33 H 1.00897 * 110.99732 * 183.18877 * 19 18 17 34 34 H 1.09004 * 109.48867 * 180.71164 * 20 19 18 35 35 H 1.09000 * 109.50665 * 60.65371 * 20 19 18 36 36 H 1.09009 * 109.48672 * 296.77811 * 21 16 15 37 37 H 1.09000 * 109.48995 * 56.81937 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4403 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0548 -1.2312 -0.2643 9 6 1.3444 -2.4113 0.3478 10 6 0.2135 -2.3790 1.1848 11 6 -0.4240 -3.5523 1.5166 12 6 0.0435 -4.7632 1.0291 13 6 1.1563 -4.8070 0.2040 14 6 1.8104 -3.6459 -0.1402 15 6 3.0205 -3.6967 -1.0370 16 7 4.2388 -3.6033 -0.2215 17 6 4.1652 -4.5011 0.9397 18 6 5.4148 -4.3161 1.8040 19 7 6.6108 -4.5986 0.9982 20 6 6.6843 -3.7008 -0.1629 21 6 5.4348 -3.8858 -1.0272 22 1 -0.4851 0.8400 -0.0004 23 1 -0.1526 -1.4368 1.5652 24 1 -1.2945 -3.5295 2.1555 25 1 -0.4634 -5.6793 1.2944 26 1 1.5120 -5.7559 -0.1697 27 1 3.0241 -4.6364 -1.5893 28 1 2.9880 -2.8631 -1.7385 29 1 3.2783 -4.2640 1.5272 30 1 4.1096 -5.5344 0.5974 31 1 5.3762 -5.0017 2.6505 32 1 5.4562 -3.2898 2.1689 33 1 7.4476 -4.5345 1.5584 34 1 7.5712 -3.9380 -0.7504 35 1 6.7401 -2.6674 0.1791 36 1 5.3935 -4.9122 -1.3919 37 1 5.4731 -3.2004 -1.8739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:56 Heat of formation + Delta-G solvation = 8.029933 kcal Electronic energy + Delta-G solvation = -18201.852199 eV Core-core repulsion = 15556.520535 eV Total energy + Delta-G solvation = -2645.331664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36313 -38.92671 -35.55754 -35.37817 -32.11879 -31.65521 -31.14908 -28.01533 -26.89027 -24.42019 -24.27166 -22.79557 -21.25377 -20.55306 -18.98225 -17.78549 -17.14443 -16.39648 -15.95485 -15.81526 -15.62625 -15.46901 -15.00200 -14.89425 -14.47350 -14.27009 -13.50128 -13.37292 -12.99893 -12.87129 -12.73111 -12.70382 -12.37731 -12.16936 -12.11695 -11.80957 -11.64459 -11.31429 -11.04649 -10.96378 -9.48470 -9.25372 -9.20907 -8.97926 -8.56261 -6.22277 1.00669 1.12894 1.39070 1.49944 1.56608 2.23928 2.79893 3.16747 3.31730 3.86432 4.05006 4.16440 4.25308 4.35517 4.43040 4.48056 4.53877 4.60295 4.68455 4.73729 4.86369 4.89768 4.99159 5.09656 5.10898 5.18989 5.29857 5.40673 5.55964 5.79866 5.93324 6.04254 6.17859 6.23514 6.30397 6.39928 6.48014 6.54943 6.80452 7.06960 7.14472 8.40184 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.009460 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.288320 B = 2959.070480 C = 4070.872557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.033 3.967 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.470 4.470 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.194 4.194 11 C -0.113 4.113 12 C -0.244 4.244 13 C -0.089 4.089 14 C -0.201 4.201 15 C 0.134 3.866 16 N -0.540 5.540 17 C 0.069 3.931 18 C 0.065 3.935 19 N -0.691 5.691 20 C 0.064 3.936 21 C 0.053 3.947 22 H 0.284 0.716 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.025 0.975 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.027 0.973 31 H 0.090 0.910 32 H 0.026 0.974 33 H 0.354 0.646 34 H 0.102 0.898 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 -4.414 0.567 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.500 4.500 8 H 0.104 0.896 9 C 0.099 3.901 10 C -0.213 4.213 11 C -0.131 4.131 12 C -0.263 4.263 13 C -0.108 4.108 14 C -0.203 4.203 15 C 0.008 3.992 16 N -0.265 5.265 17 C -0.059 4.059 18 C -0.065 4.065 19 N -0.323 5.323 20 C -0.065 4.065 21 C -0.075 4.075 22 H 0.094 0.906 23 H 0.114 0.886 24 H 0.122 0.878 25 H 0.131 0.869 26 H 0.124 0.876 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.173 0.827 34 H 0.120 0.880 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.556 -4.282 0.361 10.478 hybrid contribution -0.129 0.890 0.136 0.909 sum 9.428 -3.392 0.497 10.032 Atomic orbital electron populations 1.69900 1.08908 1.30092 1.36771 1.26727 0.95334 1.04340 0.91702 0.85342 0.79160 0.76719 0.79319 1.18843 1.19576 1.18605 1.19847 0.98064 0.91411 1.40641 0.89648 1.17689 0.90977 0.92705 0.88716 1.21333 1.00585 0.96750 1.02681 1.20926 0.98967 0.93271 0.99942 1.20654 1.01503 0.96735 1.07399 1.20671 0.95882 0.96301 0.97958 1.19764 1.01081 0.93324 1.06098 1.20480 0.87024 0.98260 0.93480 1.62168 1.02172 1.53048 1.09121 1.21975 0.97809 0.93476 0.92666 1.21936 0.89799 0.99278 0.95467 1.60524 1.05482 1.55171 1.11157 1.21978 0.97621 0.94344 0.92574 1.22232 0.89907 0.99339 0.96067 0.90564 0.88551 0.87781 0.86932 0.87629 0.95644 0.92140 0.92093 0.95507 0.89126 0.95615 0.82705 0.88028 0.95236 0.94802 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.09 10.97 21.83 0.24 -43.85 16 2 C 0.03 1.67 5.16 85.26 0.44 2.11 16 3 Si 0.97 39.28 29.59 68.60 2.03 41.31 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.47 -25.05 8.18 23.46 0.19 -24.85 16 8 H 0.09 4.50 6.85 -2.91 -0.02 4.48 16 9 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 10 C -0.19 -10.37 8.69 22.73 0.20 -10.17 16 11 C -0.11 -5.34 10.02 22.22 0.22 -5.12 16 12 C -0.24 -10.68 10.05 22.46 0.23 -10.46 16 13 C -0.09 -3.92 8.68 22.22 0.19 -3.72 16 14 C -0.20 -9.49 3.76 -19.40 -0.07 -9.56 16 15 C 0.13 5.57 4.61 85.56 0.39 5.96 16 16 N -0.54 -20.32 4.59 -900.26 -4.13 -24.45 16 17 C 0.07 2.48 4.89 86.31 0.42 2.91 16 18 C 0.06 1.91 6.72 86.31 0.58 2.49 16 19 N -0.69 -17.23 6.90 -513.43 -3.54 -20.77 16 20 C 0.06 1.62 6.72 86.31 0.58 2.20 16 21 C 0.05 1.59 5.58 86.31 0.48 2.07 16 22 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 23 H 0.10 5.44 6.21 -2.91 -0.02 5.42 16 24 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 25 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 26 H 0.11 4.08 8.03 -2.91 -0.02 4.06 16 27 H 0.03 0.98 7.94 -2.39 -0.02 0.96 16 28 H 0.06 2.68 7.34 -2.39 -0.02 2.66 16 29 H 0.06 2.55 6.22 -2.39 -0.01 2.54 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.35 6.86 8.90 -89.70 -0.80 6.06 16 34 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -58.53 294.88 -1.41 -59.94 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.26 Total: 28.64 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 3.74 Total: -40.83 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -7.44 Total: -89.07 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -58.53 -1.41 -59.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.974 kcal (2) G-P(sol) polarization free energy of solvation -58.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds