Wall clock time and date at job start Mon Mar 30 2020 03:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86806 * 119.99917 * 2 1 4 4 H 1.48497 * 109.46833 * 270.00288 * 3 2 1 5 5 H 1.48499 * 109.46935 * 30.00349 * 3 2 1 6 6 H 1.48496 * 109.46779 * 150.00607 * 3 2 1 7 7 C 1.39948 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99489 * 162.27900 * 7 2 1 9 9 C 1.41393 * 119.99941 * 342.27801 * 7 2 1 10 10 C 1.40734 * 120.24650 * 335.23875 * 9 7 2 11 11 C 1.37596 * 119.74889 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24361 * 359.97438 * 11 10 9 13 13 C 1.38613 * 120.50307 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.87412 * 180.02562 * 13 12 11 15 15 N 1.46907 * 109.47016 * 89.99685 * 14 13 12 16 16 C 1.46955 * 110.99677 * 46.20174 * 15 14 13 17 17 C 1.53054 * 109.36182 * 183.18643 * 16 15 14 18 18 N 1.46954 * 109.36519 * 301.59886 * 17 16 15 19 19 C 1.46957 * 110.88142 * 59.31691 * 18 17 16 20 20 C 1.46954 * 110.99824 * 169.99607 * 15 14 13 21 21 C 1.37638 * 120.25078 * 0.29235 * 13 12 11 22 22 H 0.96999 * 119.99937 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.12368 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.87614 * 179.97438 * 11 10 9 25 25 H 1.07997 * 119.74775 * 179.97438 * 12 11 10 26 26 H 1.08999 * 109.47471 * 209.99863 * 14 13 12 27 27 H 1.08995 * 109.47407 * 330.00023 * 14 13 12 28 28 H 1.08997 * 109.48829 * 303.15297 * 16 15 14 29 29 H 1.09000 * 109.49026 * 63.21939 * 16 15 14 30 30 H 1.09003 * 109.48898 * 181.63117 * 17 16 15 31 31 H 1.08993 * 109.50739 * 61.57661 * 17 16 15 32 32 H 1.00897 * 111.00236 * 183.18725 * 18 17 16 33 33 H 1.08997 * 109.48832 * 180.71287 * 19 18 17 34 34 H 1.09006 * 109.50395 * 60.66086 * 19 18 17 35 35 H 1.09000 * 109.49416 * 296.78118 * 20 15 14 36 36 H 1.09003 * 109.48660 * 56.84797 * 20 15 14 37 37 H 1.07998 * 120.12829 * 179.70484 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4401 0.6999 7 6 2.0080 -1.2120 -0.0005 8 1 3.0496 -1.2340 -0.2853 9 6 1.3513 -2.4076 0.3717 10 6 0.2229 -2.3647 1.2116 11 6 -0.4079 -3.5345 1.5678 12 6 0.0639 -4.7523 1.1020 13 6 1.1738 -4.8064 0.2733 14 6 1.6741 -6.1376 -0.2252 15 7 1.0138 -6.4641 -1.4963 16 6 1.0173 -5.3082 -2.4036 17 6 0.2527 -5.6635 -3.6810 18 7 0.8810 -6.8301 -4.3165 19 6 0.8776 -7.9860 -3.4090 20 6 1.6422 -7.6307 -2.1317 21 6 1.8238 -3.6493 -0.0914 22 1 -0.4850 0.8400 0.0004 23 1 -0.1459 -1.4173 1.5759 24 1 -1.2737 -3.5040 2.2126 25 1 -0.4372 -5.6655 1.3869 26 1 2.7521 -6.0864 -0.3785 27 1 1.4480 -6.9094 0.5104 28 1 0.5356 -4.4611 -1.9153 29 1 2.0450 -5.0468 -2.6558 30 1 0.2787 -4.8173 -4.3677 31 1 -0.7822 -5.8983 -3.4324 32 1 0.4275 -7.0544 -5.1894 33 1 1.3592 -8.8331 -3.8974 34 1 -0.1501 -8.2477 -3.1569 35 1 2.6770 -7.3958 -2.3808 36 1 1.6161 -8.4768 -1.4450 37 1 2.6912 -3.6941 -0.7333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:56 Heat of formation + Delta-G solvation = 22.861620 kcal Electronic energy + Delta-G solvation = -17778.308731 eV Core-core repulsion = 15133.620217 eV Total energy + Delta-G solvation = -2644.688514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.98642 -37.34222 -34.54411 -33.34263 -30.75029 -29.94360 -29.69493 -26.40469 -25.18054 -23.17497 -23.04940 -20.72291 -19.95774 -19.33275 -16.96623 -16.57049 -15.33325 -14.78525 -14.65612 -14.38078 -14.33239 -14.27777 -13.72412 -13.35397 -13.04138 -12.43559 -12.14548 -11.72046 -11.48837 -11.44756 -11.05595 -11.02367 -10.98153 -10.66647 -10.52517 -10.49488 -10.30921 -9.52219 -9.37420 -9.12174 -8.42471 -7.92557 -7.42271 -7.23225 -6.73741 -4.33554 2.80486 2.92296 3.07952 3.12081 3.23973 3.94776 4.32750 4.36725 4.69996 5.12006 5.29708 5.39679 5.54480 5.67324 5.68631 5.77116 5.83731 5.91577 6.00520 6.09024 6.22161 6.34305 6.44692 6.55966 6.58773 6.94224 7.04001 7.08216 7.22958 7.33444 7.39851 7.52522 7.53173 7.63478 7.93793 8.06112 8.13643 8.30052 8.65434 8.91496 8.99341 10.21247 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.005981 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.152909 B = 4680.739323 C = 5176.182406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.108 3.892 10 C -0.159 4.159 11 C -0.110 4.110 12 C -0.216 4.216 13 C -0.067 4.067 14 C 0.104 3.896 15 N -0.533 5.533 16 C 0.056 3.944 17 C 0.059 3.941 18 N -0.693 5.693 19 C 0.061 3.939 20 C 0.054 3.946 21 C -0.215 4.215 22 H 0.279 0.721 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.337 0.663 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -8.790 -4.402 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.106 3.894 10 C -0.179 4.179 11 C -0.128 4.128 12 C -0.236 4.236 13 C -0.068 4.068 14 C -0.023 4.023 15 N -0.258 5.258 16 C -0.072 4.072 17 C -0.071 4.071 18 N -0.325 5.325 19 C -0.068 4.068 20 C -0.074 4.074 21 C -0.235 4.235 22 H 0.090 0.910 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.154 0.846 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.541 -8.560 -4.143 9.525 hybrid contribution 0.173 0.743 -0.272 0.810 sum 0.714 -7.817 -4.415 9.005 Atomic orbital electron populations 1.69827 1.07540 1.29093 1.35680 1.25875 0.94676 1.01182 0.92267 0.86372 0.80691 0.80833 0.79182 1.19549 1.20137 1.18526 1.19523 0.97985 0.91251 1.40749 0.90651 1.17557 0.91237 0.91867 0.88731 1.21339 0.99195 0.96748 1.00611 1.20683 0.98716 0.93352 1.00054 1.20189 1.00436 0.96082 1.06888 1.19089 0.96682 0.92543 0.98441 1.20978 0.95061 0.95908 0.90315 1.62267 1.53999 1.05248 1.04242 1.22274 0.99382 0.94058 0.91454 1.22059 0.96204 0.92901 0.95897 1.60540 1.59453 1.05874 1.06597 1.21950 0.99108 0.92715 0.93071 1.22139 0.96265 0.94294 0.94752 1.20821 1.03546 0.92404 1.06724 0.90970 0.86590 0.89505 0.89523 0.95170 0.91236 0.88112 0.94535 0.90511 0.94497 0.84555 0.90896 0.94545 0.94516 0.90894 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.97 55.55 0.61 -20.00 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.90 18.73 29.60 -169.99 -5.03 13.70 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 7 C -0.47 -12.35 9.05 -37.74 -0.34 -12.69 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.11 2.87 5.57 -106.82 -0.60 2.28 16 10 C -0.16 -4.15 8.70 -38.87 -0.34 -4.49 16 11 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 12 C -0.22 -4.86 9.70 -39.29 -0.38 -5.24 16 13 C -0.07 -1.48 4.13 -104.70 -0.43 -1.91 16 14 C 0.10 1.92 5.43 -4.97 -0.03 1.90 16 15 N -0.53 -9.31 4.85 -235.91 -1.14 -10.45 16 16 C 0.06 1.03 4.64 -3.77 -0.02 1.01 16 17 C 0.06 0.90 6.72 -3.77 -0.03 0.88 16 18 N -0.69 -9.28 6.90 -113.64 -0.78 -10.07 16 19 C 0.06 0.77 6.72 -3.77 -0.03 0.75 16 20 C 0.05 0.78 5.58 -3.77 -0.02 0.76 16 21 C -0.21 -5.18 7.59 -38.87 -0.30 -5.48 16 22 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 23 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 24 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 27 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 28 H 0.10 2.18 5.86 -51.93 -0.30 1.87 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.34 3.67 8.90 -39.29 -0.35 3.32 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -27.31 297.05 -10.45 -37.76 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.59 Total: 7.96 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.99 Total: -23.38 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -1.32 Total: -40.52 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.31 -10.45 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.619 kcal (2) G-P(sol) polarization free energy of solvation -27.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds