Wall clock time and date at job start Mon Mar 30 2020 03:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86806 * 119.99917 * 2 1 4 4 H 1.48497 * 109.46833 * 270.00288 * 3 2 1 5 5 H 1.48499 * 109.46935 * 30.00349 * 3 2 1 6 6 H 1.48496 * 109.46779 * 150.00607 * 3 2 1 7 7 C 1.39948 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99489 * 162.27900 * 7 2 1 9 9 C 1.41393 * 119.99941 * 342.27801 * 7 2 1 10 10 C 1.40734 * 120.24650 * 335.23875 * 9 7 2 11 11 C 1.37596 * 119.74889 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24361 * 359.97438 * 11 10 9 13 13 C 1.38613 * 120.50307 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.87412 * 180.02562 * 13 12 11 15 15 N 1.46907 * 109.47016 * 89.99685 * 14 13 12 16 16 C 1.46955 * 110.99677 * 46.20174 * 15 14 13 17 17 C 1.53054 * 109.36182 * 183.18643 * 16 15 14 18 18 N 1.46954 * 109.36519 * 301.59886 * 17 16 15 19 19 C 1.46957 * 110.88142 * 59.31691 * 18 17 16 20 20 C 1.46954 * 110.99824 * 169.99607 * 15 14 13 21 21 C 1.37638 * 120.25078 * 0.29235 * 13 12 11 22 22 H 0.96999 * 119.99937 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.12368 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.87614 * 179.97438 * 11 10 9 25 25 H 1.07997 * 119.74775 * 179.97438 * 12 11 10 26 26 H 1.08999 * 109.47471 * 209.99863 * 14 13 12 27 27 H 1.08995 * 109.47407 * 330.00023 * 14 13 12 28 28 H 1.08997 * 109.48829 * 303.15297 * 16 15 14 29 29 H 1.09000 * 109.49026 * 63.21939 * 16 15 14 30 30 H 1.09003 * 109.48898 * 181.63117 * 17 16 15 31 31 H 1.08993 * 109.50739 * 61.57661 * 17 16 15 32 32 H 1.00897 * 111.00236 * 183.18725 * 18 17 16 33 33 H 1.08997 * 109.48832 * 180.71287 * 19 18 17 34 34 H 1.09006 * 109.50395 * 60.66086 * 19 18 17 35 35 H 1.09000 * 109.49416 * 296.78118 * 20 15 14 36 36 H 1.09003 * 109.48660 * 56.84797 * 20 15 14 37 37 H 1.07998 * 120.12829 * 179.70484 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4401 0.6999 7 6 2.0080 -1.2120 -0.0005 8 1 3.0496 -1.2340 -0.2853 9 6 1.3513 -2.4076 0.3717 10 6 0.2229 -2.3647 1.2116 11 6 -0.4079 -3.5345 1.5678 12 6 0.0639 -4.7523 1.1020 13 6 1.1738 -4.8064 0.2733 14 6 1.6741 -6.1376 -0.2252 15 7 1.0138 -6.4641 -1.4963 16 6 1.0173 -5.3082 -2.4036 17 6 0.2527 -5.6635 -3.6810 18 7 0.8810 -6.8301 -4.3165 19 6 0.8776 -7.9860 -3.4090 20 6 1.6422 -7.6307 -2.1317 21 6 1.8238 -3.6493 -0.0914 22 1 -0.4850 0.8400 0.0004 23 1 -0.1459 -1.4173 1.5759 24 1 -1.2737 -3.5040 2.2126 25 1 -0.4372 -5.6655 1.3869 26 1 2.7521 -6.0864 -0.3785 27 1 1.4480 -6.9094 0.5104 28 1 0.5356 -4.4611 -1.9153 29 1 2.0450 -5.0468 -2.6558 30 1 0.2787 -4.8173 -4.3677 31 1 -0.7822 -5.8983 -3.4324 32 1 0.4275 -7.0544 -5.1894 33 1 1.3592 -8.8331 -3.8974 34 1 -0.1501 -8.2477 -3.1569 35 1 2.6770 -7.3958 -2.3808 36 1 1.6161 -8.4768 -1.4450 37 1 2.6912 -3.6941 -0.7333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:56 Heat of formation + Delta-G solvation = 4.956324 kcal Electronic energy + Delta-G solvation = -17779.085163 eV Core-core repulsion = 15133.620217 eV Total energy + Delta-G solvation = -2645.464946 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43332 -39.00438 -36.09488 -35.02394 -32.07812 -31.78463 -31.35187 -27.92081 -27.07537 -24.53893 -24.36799 -22.58703 -21.72162 -20.64279 -18.81196 -17.81006 -17.20882 -16.47447 -16.08091 -15.91749 -15.70416 -15.51932 -15.12972 -15.01053 -14.55910 -14.15981 -13.60091 -13.46539 -13.07980 -13.03801 -12.78060 -12.65381 -12.36733 -12.22020 -12.14526 -11.93386 -11.72076 -11.33092 -11.22080 -11.01431 -9.54925 -9.37093 -9.33496 -9.03331 -8.62957 -6.33835 0.99771 1.04296 1.37147 1.48312 1.54013 2.20632 2.69647 3.08513 3.28214 3.76045 3.98628 4.01068 4.18567 4.28099 4.36904 4.42365 4.48176 4.59913 4.63892 4.70801 4.79934 4.86766 4.95621 5.03336 5.07058 5.13086 5.13735 5.29826 5.51110 5.70324 5.89837 5.99520 6.06099 6.11731 6.19202 6.23579 6.40189 6.50745 6.70654 6.95136 7.04802 8.34343 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.005981 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.152909 B = 4680.739323 C = 5176.182406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.079 3.921 10 C -0.187 4.187 11 C -0.112 4.112 12 C -0.216 4.216 13 C -0.060 4.060 14 C 0.108 3.892 15 N -0.536 5.536 16 C 0.063 3.937 17 C 0.066 3.934 18 N -0.696 5.696 19 C 0.063 3.937 20 C 0.051 3.949 21 C -0.223 4.223 22 H 0.287 0.713 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.355 0.645 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.030 0.970 36 H 0.096 0.904 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -10.371 -4.974 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.077 3.923 10 C -0.207 4.207 11 C -0.130 4.130 12 C -0.236 4.236 13 C -0.060 4.060 14 C -0.019 4.019 15 N -0.261 5.261 16 C -0.066 4.066 17 C -0.064 4.064 18 N -0.329 5.329 19 C -0.066 4.066 20 C -0.077 4.077 21 C -0.243 4.243 22 H 0.098 0.902 23 H 0.117 0.883 24 H 0.127 0.873 25 H 0.131 0.869 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.174 0.826 33 H 0.121 0.879 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.114 0.886 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.590 -10.172 -4.728 11.232 hybrid contribution 0.130 1.094 -0.108 1.107 sum 0.719 -9.078 -4.836 10.311 Atomic orbital electron populations 1.69880 1.08946 1.30439 1.36020 1.26707 0.95450 1.04353 0.91221 0.85260 0.79136 0.76162 0.79488 1.18710 1.18939 1.18442 1.19757 0.98099 0.92636 1.42784 0.91144 1.17907 0.91999 0.92945 0.89450 1.21283 1.00239 0.97034 1.02107 1.20964 0.99050 0.93077 0.99918 1.20527 1.00297 0.96587 1.06146 1.19431 0.95818 0.93647 0.97153 1.20961 0.95089 0.94332 0.91505 1.62300 1.54346 1.05649 1.03836 1.22067 0.98270 0.93488 0.92742 1.21893 0.95554 0.94217 0.94704 1.60488 1.59418 1.05602 1.07427 1.22024 0.99257 0.93068 0.92285 1.22314 0.95934 0.93411 0.96059 1.20871 1.03781 0.92741 1.06909 0.90212 0.88305 0.87276 0.86861 0.95046 0.89018 0.92066 0.96237 0.90105 0.94721 0.82575 0.87866 0.94380 0.95148 0.88612 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.14 10.97 21.83 0.24 -43.90 16 2 C 0.04 1.92 5.14 85.26 0.44 2.36 16 3 Si 0.98 39.05 29.60 68.60 2.03 41.08 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.50 -27.89 9.05 23.46 0.21 -27.68 16 8 H 0.07 3.81 7.91 -2.91 -0.02 3.78 16 9 C 0.08 4.37 5.57 -21.29 -0.12 4.26 16 10 C -0.19 -10.09 8.70 22.73 0.20 -9.89 16 11 C -0.11 -5.30 10.02 22.22 0.22 -5.08 16 12 C -0.22 -9.50 9.70 22.46 0.22 -9.28 16 13 C -0.06 -2.64 4.13 -19.92 -0.08 -2.72 16 14 C 0.11 3.82 5.43 85.56 0.46 4.28 16 15 N -0.54 -17.85 4.85 -900.28 -4.37 -22.22 16 16 C 0.06 2.31 4.64 86.31 0.40 2.71 16 17 C 0.07 1.97 6.72 86.31 0.58 2.55 16 18 N -0.70 -16.94 6.90 -513.44 -3.54 -20.48 16 19 C 0.06 1.38 6.72 86.31 0.58 1.96 16 20 C 0.05 1.31 5.58 86.31 0.48 1.79 16 21 C -0.22 -11.12 7.59 22.73 0.17 -10.95 16 22 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 23 H 0.10 5.58 6.18 -2.91 -0.02 5.56 16 24 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 25 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 26 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 27 H 0.09 2.86 8.08 -2.39 -0.02 2.84 16 28 H 0.06 2.73 5.86 -2.39 -0.01 2.71 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.36 6.68 8.90 -89.70 -0.80 5.89 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -60.48 297.05 -1.62 -62.10 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.25 Total: 29.12 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 3.77 Total: -45.69 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -7.67 Total: -86.61 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -60.48 -1.62 -62.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.058 kcal (2) G-P(sol) polarization free energy of solvation -60.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds