Wall clock time and date at job start Mon Mar 30 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47912 * 110.99908 * 2 1 4 4 C 1.54600 * 102.62564 * 265.42523 * 3 2 1 5 5 C 1.51573 * 102.83093 * 334.44612 * 4 3 2 6 6 C 1.37915 * 131.56735 * 196.24723 * 5 4 3 7 7 C 1.38306 * 120.08458 * 179.60017 * 6 5 4 8 8 C 1.50693 * 120.06032 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47253 * 269.97965 * 8 7 6 10 10 C 1.46903 * 111.00492 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47491 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99763 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99989 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00097 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47185 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47122 * 119.99848 * 15 13 11 18 18 H 1.48500 * 109.47249 * 240.00386 * 15 13 11 19 19 C 1.38309 * 119.87981 * 359.93191 * 7 6 5 20 20 C 1.37910 * 120.26409 * 0.40461 * 19 7 6 21 21 C 1.38969 * 107.95062 * 16.02043 * 5 4 3 22 22 H 1.08996 * 109.46899 * 59.87812 * 1 2 3 23 23 H 1.08997 * 109.46918 * 179.87262 * 1 2 3 24 24 H 1.09000 * 109.47297 * 299.87907 * 1 2 3 25 25 H 1.09003 * 110.77456 * 147.14341 * 3 2 1 26 26 H 1.09002 * 110.77539 * 23.71189 * 3 2 1 27 27 H 1.08997 * 110.74264 * 216.10844 * 4 3 2 28 28 H 1.09007 * 110.89648 * 92.85046 * 4 3 2 29 29 H 1.07997 * 119.96040 * 359.58828 * 6 5 4 30 30 H 1.09002 * 109.47537 * 29.97728 * 8 7 6 31 31 H 1.09000 * 109.47438 * 149.98051 * 8 7 6 32 32 H 1.00901 * 111.00209 * 303.95651 * 9 8 7 33 33 H 1.09003 * 109.46547 * 300.00636 * 10 9 8 34 34 H 1.08995 * 109.46823 * 59.99703 * 10 9 8 35 35 H 0.97000 * 120.00126 * 180.02562 * 14 13 11 36 36 H 1.08002 * 119.86327 * 180.12042 * 19 7 6 37 37 H 1.07996 * 119.89803 * 179.76117 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 2.2325 1.6532 -1.5038 5 6 2.4320 0.2618 -2.0709 6 6 2.9601 -0.1709 -3.2692 7 6 3.0374 -1.5241 -3.5444 8 6 3.6139 -1.9962 -4.8542 9 7 2.5402 -2.1060 -5.8507 10 6 3.0664 -2.5643 -7.1434 11 6 1.9387 -2.6640 -8.1381 12 1 0.9318 -2.4117 -7.8398 13 6 2.1924 -3.0773 -9.4287 14 7 3.4184 -3.3850 -9.7917 15 14 0.7946 -3.2002 -10.6618 16 1 -0.4780 -2.8007 -10.0090 17 1 1.0662 -2.2977 -11.8095 18 1 0.6844 -4.5992 -11.1474 19 6 2.5853 -2.4432 -2.6150 20 6 2.0500 -2.0155 -1.4181 21 6 1.9709 -0.6534 -1.1323 22 1 -0.3633 0.5157 -0.8889 23 1 -0.3633 -1.0276 -0.0023 24 1 -0.3634 0.5119 0.8911 25 1 2.9369 1.4350 0.5529 26 1 1.2665 2.0762 0.4098 27 1 3.1244 2.2621 -1.6520 28 1 1.3615 2.1315 -1.9521 29 1 3.3136 0.5478 -3.9937 30 1 4.3602 -1.2816 -5.2015 31 1 4.0815 -2.9710 -4.7151 32 1 1.8041 -2.7136 -5.5237 33 1 3.8087 -1.8533 -7.5062 34 1 3.5305 -3.5429 -7.0204 35 1 3.5969 -3.6754 -10.6998 36 1 2.6476 -3.4999 -2.8294 37 1 1.6953 -2.7382 -0.6983 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050286303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:01 Heat of formation + Delta-G solvation = 35.850317 kcal Electronic energy + Delta-G solvation = -16990.849399 eV Core-core repulsion = 14346.724117 eV Total energy + Delta-G solvation = -2644.125282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72800 -37.39795 -34.85220 -32.48455 -32.35802 -30.19071 -28.96958 -27.03526 -25.83378 -24.04228 -22.65235 -21.43843 -20.96207 -20.13684 -16.66652 -16.45272 -16.15034 -15.43015 -15.13114 -14.54069 -14.12740 -13.88546 -13.73606 -13.36601 -13.21636 -12.93059 -12.73359 -12.34552 -12.12710 -11.95283 -11.51315 -11.37668 -11.30752 -11.02321 -10.77659 -10.65565 -10.56185 -9.94399 -9.35017 -9.17434 -8.64636 -8.49052 -7.82521 -7.28745 -6.03673 -4.05578 1.42019 1.55755 3.30943 3.38092 3.43515 3.56654 3.84765 4.43657 4.51966 4.69639 4.82923 5.02780 5.11257 5.21070 5.28865 5.32351 5.37676 5.44900 5.51871 5.61970 5.65375 5.66896 5.83017 5.87806 5.93178 6.21903 6.26054 6.43205 6.50321 6.76968 6.87936 6.90317 7.23218 7.31490 7.40857 7.78148 8.11550 8.38365 8.59711 9.03998 9.59426 11.07479 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038909 B = 0.003955 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.449123 B = 7077.389799 C = 7199.318395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.497 5.497 3 C 0.050 3.950 4 C -0.109 4.109 5 C -0.141 4.141 6 C -0.069 4.069 7 C -0.073 4.073 8 C 0.096 3.904 9 N -0.684 5.684 10 C 0.192 3.808 11 C -0.513 4.513 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.101 4.101 20 C -0.109 4.109 21 C 0.072 3.928 22 H 0.033 0.967 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.330 0.670 33 H 0.029 0.971 34 H -0.013 1.013 35 H 0.261 0.739 36 H 0.124 0.876 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 7.317 19.346 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.215 5.215 3 C -0.077 4.077 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.088 4.088 7 C -0.074 4.074 8 C -0.033 4.033 9 N -0.314 5.314 10 C 0.066 3.934 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.120 4.120 20 C -0.129 4.129 21 C -0.023 4.023 22 H 0.052 0.948 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.146 0.854 33 H 0.047 0.953 34 H 0.005 0.995 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.410 7.678 19.511 21.105 hybrid contribution -0.701 -0.656 -1.287 1.606 sum -3.111 7.023 18.223 19.776 Atomic orbital electron populations 1.22470 0.85818 1.02748 1.00910 1.60227 1.08341 1.14632 1.38288 1.23151 1.01087 0.87986 0.95509 1.21647 1.02790 0.94575 0.95722 1.20901 1.03365 0.95181 0.94920 1.20292 0.98287 0.95377 0.94807 1.19943 0.98773 0.92885 0.95825 1.20847 0.94674 0.99052 0.88748 1.60728 1.10460 1.56734 1.03518 1.19596 0.95903 0.93541 0.84372 1.21221 0.94692 1.44141 0.95126 0.91901 1.24991 0.95776 0.95416 0.98413 1.69972 1.19160 1.45897 1.18737 0.86426 0.82297 0.77541 0.81058 1.19653 1.20980 1.21068 1.20869 0.98480 0.99598 0.93091 1.20363 1.02208 0.92814 0.97531 1.19444 0.99756 0.93598 0.89506 0.94803 0.91023 0.91016 0.89427 0.89967 0.89734 0.90276 0.85997 0.90931 0.95296 0.85394 0.95333 0.99484 0.92954 0.85760 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.29 60.07 0.56 0.82 16 2 N -0.50 -5.78 5.33 -176.84 -0.94 -6.72 16 3 C 0.05 0.47 7.00 -2.43 -0.02 0.45 16 4 C -0.11 -1.15 6.97 -26.61 -0.19 -1.34 16 5 C -0.14 -1.95 6.23 -104.04 -0.65 -2.60 16 6 C -0.07 -1.05 9.69 -39.67 -0.38 -1.43 16 7 C -0.07 -1.17 5.40 -104.57 -0.56 -1.74 16 8 C 0.10 1.75 5.82 -4.98 -0.03 1.72 16 9 N -0.68 -14.98 6.48 -116.34 -0.75 -15.73 16 10 C 0.19 5.10 5.44 -4.98 -0.03 5.07 16 11 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 12 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 15 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C -0.10 -1.46 9.68 -39.68 -0.38 -1.85 16 20 C -0.11 -1.48 10.07 -39.27 -0.40 -1.88 16 21 C 0.07 0.99 5.59 -83.41 -0.47 0.52 16 22 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.60 7.76 -51.93 -0.40 0.19 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 31 H 0.03 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.33 6.98 8.72 -39.29 -0.34 6.64 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -31.07 309.95 -10.05 -41.13 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.78 Total: 1.89 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -2.96 Total: -15.78 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.96 Total: -48.71 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.07 -10.05 -41.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050286303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.975 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds