Wall clock time and date at job start Mon Mar 30 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47912 * 110.99908 * 2 1 4 4 C 1.54600 * 102.62564 * 265.42523 * 3 2 1 5 5 C 1.51573 * 102.83093 * 334.44612 * 4 3 2 6 6 C 1.37915 * 131.56735 * 196.24723 * 5 4 3 7 7 C 1.38306 * 120.08458 * 179.60017 * 6 5 4 8 8 C 1.50693 * 120.06032 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47253 * 269.97965 * 8 7 6 10 10 C 1.46903 * 111.00492 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47491 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99763 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99989 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00097 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47185 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47122 * 119.99848 * 15 13 11 18 18 H 1.48500 * 109.47249 * 240.00386 * 15 13 11 19 19 C 1.38309 * 119.87981 * 359.93191 * 7 6 5 20 20 C 1.37910 * 120.26409 * 0.40461 * 19 7 6 21 21 C 1.38969 * 107.95062 * 16.02043 * 5 4 3 22 22 H 1.08996 * 109.46899 * 59.87812 * 1 2 3 23 23 H 1.08997 * 109.46918 * 179.87262 * 1 2 3 24 24 H 1.09000 * 109.47297 * 299.87907 * 1 2 3 25 25 H 1.09003 * 110.77456 * 147.14341 * 3 2 1 26 26 H 1.09002 * 110.77539 * 23.71189 * 3 2 1 27 27 H 1.08997 * 110.74264 * 216.10844 * 4 3 2 28 28 H 1.09007 * 110.89648 * 92.85046 * 4 3 2 29 29 H 1.07997 * 119.96040 * 359.58828 * 6 5 4 30 30 H 1.09002 * 109.47537 * 29.97728 * 8 7 6 31 31 H 1.09000 * 109.47438 * 149.98051 * 8 7 6 32 32 H 1.00901 * 111.00209 * 303.95651 * 9 8 7 33 33 H 1.09003 * 109.46547 * 300.00636 * 10 9 8 34 34 H 1.08995 * 109.46823 * 59.99703 * 10 9 8 35 35 H 0.97000 * 120.00126 * 180.02562 * 14 13 11 36 36 H 1.08002 * 119.86327 * 180.12042 * 19 7 6 37 37 H 1.07996 * 119.89803 * 179.76117 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 2.2325 1.6532 -1.5038 5 6 2.4320 0.2618 -2.0709 6 6 2.9601 -0.1709 -3.2692 7 6 3.0374 -1.5241 -3.5444 8 6 3.6139 -1.9962 -4.8542 9 7 2.5402 -2.1060 -5.8507 10 6 3.0664 -2.5643 -7.1434 11 6 1.9387 -2.6640 -8.1381 12 1 0.9318 -2.4117 -7.8398 13 6 2.1924 -3.0773 -9.4287 14 7 3.4184 -3.3850 -9.7917 15 14 0.7946 -3.2002 -10.6618 16 1 -0.4780 -2.8007 -10.0090 17 1 1.0662 -2.2977 -11.8095 18 1 0.6844 -4.5992 -11.1474 19 6 2.5853 -2.4432 -2.6150 20 6 2.0500 -2.0155 -1.4181 21 6 1.9709 -0.6534 -1.1323 22 1 -0.3633 0.5157 -0.8889 23 1 -0.3633 -1.0276 -0.0023 24 1 -0.3634 0.5119 0.8911 25 1 2.9369 1.4350 0.5529 26 1 1.2665 2.0762 0.4098 27 1 3.1244 2.2621 -1.6520 28 1 1.3615 2.1315 -1.9521 29 1 3.3136 0.5478 -3.9937 30 1 4.3602 -1.2816 -5.2015 31 1 4.0815 -2.9710 -4.7151 32 1 1.8041 -2.7136 -5.5237 33 1 3.8087 -1.8533 -7.5062 34 1 3.5305 -3.5429 -7.0204 35 1 3.5969 -3.6754 -10.6998 36 1 2.6476 -3.4999 -2.8294 37 1 1.6953 -2.7382 -0.6983 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050286303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:01 Heat of formation + Delta-G solvation = 15.571003 kcal Electronic energy + Delta-G solvation = -16991.728776 eV Core-core repulsion = 14346.724117 eV Total energy + Delta-G solvation = -2645.004659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.70185 -38.59215 -36.54811 -34.51585 -33.29855 -31.58081 -29.94683 -28.72922 -26.93360 -25.48841 -23.76410 -23.40034 -21.89809 -21.32045 -18.63131 -17.53252 -17.20737 -16.86677 -16.35465 -16.27442 -15.51103 -15.12471 -14.94571 -14.85763 -14.33121 -14.11668 -13.89895 -13.55745 -13.42507 -13.21213 -12.91326 -12.78928 -12.69626 -12.63968 -12.29328 -12.05394 -11.95310 -11.71452 -11.30044 -10.68456 -10.33526 -9.73860 -9.17923 -8.80697 -8.23733 -6.35312 0.30081 0.44945 1.40734 1.41473 1.55562 2.39163 2.62684 2.79433 3.09411 3.58593 3.70102 3.84384 4.01598 4.12529 4.13822 4.22963 4.38815 4.47393 4.53511 4.59687 4.69510 4.72893 4.78208 4.90245 4.96019 5.03317 5.05959 5.20499 5.22936 5.36123 5.45650 5.59283 5.70804 5.74871 5.96826 5.99652 6.29155 6.41339 6.67550 6.86046 7.35699 8.87938 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038909 B = 0.003955 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.449123 B = 7077.389799 C = 7199.318395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.506 5.506 3 C 0.051 3.949 4 C -0.108 4.108 5 C -0.152 4.152 6 C -0.082 4.082 7 C -0.092 4.092 8 C 0.102 3.898 9 N -0.683 5.683 10 C 0.207 3.793 11 C -0.536 4.536 12 H 0.063 0.937 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.974 3.026 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.276 1.276 19 C -0.103 4.103 20 C -0.114 4.114 21 C 0.072 3.928 22 H 0.028 0.972 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.334 0.666 33 H 0.002 0.998 34 H -0.036 1.036 35 H 0.266 0.734 36 H 0.134 0.866 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 8.063 20.698 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.224 5.224 3 C -0.075 4.075 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.101 4.101 7 C -0.093 4.093 8 C -0.027 4.027 9 N -0.313 5.313 10 C 0.079 3.921 11 C -0.574 4.574 12 H 0.081 0.919 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.799 3.201 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.201 1.201 19 C -0.123 4.123 20 C -0.133 4.133 21 C -0.024 4.024 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.151 0.849 33 H 0.020 0.980 34 H -0.018 1.018 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.029 8.436 20.895 22.891 hybrid contribution -0.172 -0.851 -1.588 1.809 sum -4.201 7.585 19.308 21.165 Atomic orbital electron populations 1.22544 0.84521 1.03031 1.01869 1.60272 1.09434 1.15754 1.36915 1.23297 1.02205 0.87310 0.94731 1.21735 1.03608 0.92861 0.96353 1.21258 1.02626 0.97287 0.94296 1.20348 0.98983 0.95042 0.95704 1.19721 1.00791 0.93710 0.95109 1.20789 0.93679 0.99094 0.89159 1.60597 1.11589 1.56221 1.02898 1.19252 0.94831 0.91552 0.86470 1.21552 0.95091 1.44636 0.96141 0.91885 1.25956 0.98577 0.94630 1.00491 1.70093 1.21399 1.46371 1.19524 0.85261 0.78872 0.77886 0.78124 1.18766 1.20299 1.20131 1.20980 0.98227 0.99839 0.93208 1.20574 1.01799 0.93517 0.97432 1.19745 0.98878 0.93739 0.90041 0.95367 0.91205 0.88488 0.88832 0.87268 0.88536 0.89692 0.86424 0.91577 0.95079 0.84853 0.98021 1.01800 0.92539 0.84853 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.29 127.69 1.19 1.62 16 2 N -0.51 -10.43 5.33 -713.40 -3.80 -14.23 16 3 C 0.05 0.80 7.00 86.65 0.61 1.41 16 4 C -0.11 -2.04 6.97 30.67 0.21 -1.82 16 5 C -0.15 -4.03 6.23 -19.49 -0.12 -4.15 16 6 C -0.08 -2.50 9.69 22.21 0.22 -2.28 16 7 C -0.09 -2.99 5.40 -19.83 -0.11 -3.09 16 8 C 0.10 3.83 5.82 85.55 0.50 4.32 16 9 N -0.68 -30.73 6.48 -521.99 -3.38 -34.11 16 10 C 0.21 11.36 5.44 85.56 0.47 11.82 16 11 C -0.54 -31.21 9.32 25.60 0.24 -30.98 16 12 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 13 C 0.00 0.10 5.46 84.65 0.46 0.56 16 14 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 15 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.10 -2.94 9.68 22.21 0.21 -2.73 16 20 C -0.11 -2.92 10.07 22.47 0.23 -2.69 16 21 C 0.07 1.84 5.59 38.29 0.21 2.05 16 22 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.10 1.12 8.11 -2.39 -0.02 1.10 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.11 1.14 7.76 -2.39 -0.02 1.13 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 30 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 31 H 0.03 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.33 14.43 8.72 -89.69 -0.78 13.65 16 33 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 34 H -0.04 -2.08 8.14 -2.39 -0.02 -2.10 16 35 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -66.67 309.95 -0.30 -66.97 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.26 Total: 17.23 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.31 Total: -25.95 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -6.90 Total: -104.99 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.67 -0.30 -66.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050286303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.540 kcal (2) G-P(sol) polarization free energy of solvation -66.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds