Wall clock time and date at job start Mon Mar 30 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00460 * 2 1 4 4 H 1.48499 * 109.47453 * 239.99841 * 3 2 1 5 5 H 1.48508 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47559 * 119.99475 * 3 2 1 7 7 C 1.37880 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99629 * 185.11837 * 7 2 1 9 9 C 1.50691 * 120.00371 * 5.12499 * 7 2 1 10 10 H 1.09001 * 109.47219 * 24.89295 * 9 7 2 11 11 C 1.50699 * 109.47314 * 264.89608 * 9 7 2 12 12 C 1.38235 * 119.99843 * 286.27981 * 11 9 7 13 13 C 1.38236 * 120.00056 * 179.76371 * 12 11 9 14 14 C 1.38238 * 119.99684 * 0.50623 * 13 12 11 15 15 C 1.38230 * 119.99876 * 359.74569 * 14 13 12 16 16 C 1.38233 * 120.00660 * 0.02562 * 15 14 13 17 17 N 1.46897 * 109.47434 * 144.89390 * 9 7 2 18 18 C 1.46954 * 111.00048 * 299.99984 * 17 9 7 19 19 C 1.53052 * 109.36573 * 176.81012 * 18 17 9 20 20 N 1.46958 * 109.36323 * 58.40226 * 19 18 17 21 21 C 1.46954 * 110.87956 * 300.67964 * 20 19 18 22 22 C 1.46958 * 111.00038 * 176.20078 * 17 9 7 23 23 H 0.97002 * 119.99942 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00143 * 359.97438 * 12 11 9 25 25 H 1.08000 * 120.00156 * 180.23274 * 13 12 11 26 26 H 1.08005 * 119.99970 * 179.72656 * 14 13 12 27 27 H 1.08011 * 119.99880 * 179.97438 * 15 14 13 28 28 H 1.07996 * 120.00752 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.49167 * 56.84589 * 18 17 9 30 30 H 1.09001 * 109.51102 * 296.78638 * 18 17 9 31 31 H 1.09001 * 109.48885 * 298.43666 * 19 18 17 32 32 H 1.08998 * 109.48967 * 178.36785 * 19 18 17 33 33 H 1.00900 * 111.00282 * 64.54658 * 20 19 18 34 34 H 1.09001 * 109.48633 * 179.29156 * 21 20 19 35 35 H 1.09003 * 109.48871 * 299.35109 * 21 20 19 36 36 H 1.08998 * 109.48787 * 303.15516 * 22 17 9 37 37 H 1.09003 * 109.48768 * 63.20245 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0840 9 6 1.2554 -2.4966 -0.1155 10 1 0.3026 -2.3245 -0.6161 11 6 1.0055 -3.0567 1.2611 12 6 2.0453 -3.6189 1.9777 13 6 1.8171 -4.1283 3.2424 14 6 0.5469 -4.0849 3.7861 15 6 -0.4939 -3.5274 3.0674 16 6 -0.2648 -3.0137 1.8046 17 7 2.0529 -3.4523 -0.8956 18 6 2.3167 -2.9386 -2.2469 19 6 3.2143 -3.9245 -2.9984 20 7 2.5552 -5.2367 -3.0564 21 6 2.2913 -5.7504 -1.7051 22 6 1.3938 -4.7645 -0.9535 23 1 -0.4850 0.8401 -0.0004 24 1 3.0367 -3.6572 1.5510 25 1 2.6303 -4.5642 3.8038 26 1 0.3677 -4.4869 4.7725 27 1 -1.4864 -3.4938 3.4920 28 1 -1.0780 -2.5785 1.2429 29 1 2.8163 -1.9723 -2.1775 30 1 1.3747 -2.8232 -2.7829 31 1 4.1670 -4.0189 -2.4774 32 1 3.3876 -3.5596 -4.0108 33 1 1.7052 -5.1908 -3.5981 34 1 1.7918 -6.7168 -1.7745 35 1 3.2336 -5.8655 -1.1693 36 1 1.2205 -5.1294 0.0588 37 1 0.4408 -4.6701 -1.4743 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:34 Heat of formation + Delta-G solvation = 31.383868 kcal Electronic energy + Delta-G solvation = -18347.618063 eV Core-core repulsion = 15703.299101 eV Total energy + Delta-G solvation = -2644.318962 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.00231 -37.72841 -34.43323 -32.23076 -30.51947 -30.06334 -29.88964 -26.83708 -24.50097 -22.85232 -22.24944 -21.58097 -20.18609 -19.44695 -16.52756 -15.96949 -15.73768 -14.71842 -14.47314 -14.23986 -14.11523 -13.74132 -13.63119 -13.44064 -12.54900 -12.39214 -12.06970 -11.96267 -11.75515 -11.43956 -11.02140 -10.93215 -10.76101 -10.66117 -10.42856 -10.22556 -10.19347 -9.79478 -9.42625 -8.63250 -8.05820 -8.00279 -7.64824 -7.26571 -6.17158 -4.20694 2.31310 2.33861 3.24857 3.29448 3.32332 4.29501 4.58972 4.72036 4.95217 5.17836 5.60692 5.67251 5.68988 5.73617 5.78934 5.82679 5.84606 5.90061 6.07665 6.27835 6.31484 6.41189 6.45597 6.54556 6.64161 6.73777 6.89671 6.98312 7.24079 7.29322 7.34182 7.42958 7.65474 7.72226 7.74493 7.81326 8.04561 8.12059 8.45554 8.90865 9.43294 10.89327 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.011887 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.842091 B = 2354.911505 C = 3864.731996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.235 3.765 10 H 0.036 0.964 11 C -0.021 4.021 12 C -0.104 4.104 13 C -0.136 4.136 14 C -0.153 4.153 15 C -0.131 4.131 16 C -0.115 4.115 17 N -0.528 5.528 18 C 0.034 3.966 19 C 0.057 3.943 20 N -0.691 5.691 21 C 0.062 3.938 22 C 0.015 3.985 23 H 0.264 0.736 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.332 0.668 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -7.649 -0.630 7.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.536 4.536 8 H 0.083 0.917 9 C 0.129 3.871 10 H 0.054 0.946 11 C -0.023 4.023 12 C -0.122 4.122 13 C -0.154 4.154 14 C -0.171 4.171 15 C -0.149 4.149 16 C -0.133 4.133 17 N -0.253 5.253 18 C -0.096 4.096 19 C -0.072 4.072 20 N -0.318 5.318 21 C -0.068 4.068 22 C -0.116 4.116 23 H 0.074 0.926 24 H 0.136 0.864 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.109 0.891 30 H 0.036 0.964 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.443 -7.931 -0.483 8.313 hybrid contribution -1.281 1.822 0.150 2.233 sum 1.161 -6.109 -0.332 6.227 Atomic orbital electron populations 1.69920 1.06025 1.27165 1.49025 1.25009 0.94904 0.99450 0.94444 0.86572 0.79584 0.82565 0.78862 1.20036 1.21290 1.20043 1.20877 0.93585 0.88719 1.50415 0.91742 1.18471 0.93454 0.88881 0.86245 0.94640 1.20430 0.91653 0.91433 0.98743 1.20955 0.99419 0.98242 0.93613 1.21000 0.96322 1.01865 0.96222 1.20807 0.93658 1.03271 0.99385 1.20958 0.98141 1.00392 0.95442 1.21071 0.97487 0.99258 0.95510 1.62249 1.47879 1.02098 1.13100 1.22536 0.97988 0.99773 0.89265 1.22144 0.98222 0.87528 0.99344 1.60856 1.29707 1.26786 1.14499 1.22050 0.99751 0.96335 0.88691 1.22779 0.95164 0.92734 1.00888 0.92635 0.86361 0.87646 0.87814 0.87669 0.86610 0.89084 0.96416 0.90555 0.91303 0.85179 0.91469 0.90537 0.90727 0.96429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.37 12.84 55.43 0.71 -23.66 16 2 C 0.07 1.74 5.45 -17.82 -0.10 1.65 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.50 -12.96 6.95 -34.44 -0.24 -13.20 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.24 5.61 1.75 -70.02 -0.12 5.48 16 10 H 0.04 0.97 7.17 -51.93 -0.37 0.59 16 11 C -0.02 -0.48 3.51 -104.62 -0.37 -0.85 16 12 C -0.10 -2.16 8.46 -39.58 -0.34 -2.49 16 13 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 14 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 15 C -0.13 -2.50 10.05 -39.59 -0.40 -2.90 16 16 C -0.11 -2.51 9.67 -39.58 -0.38 -2.89 16 17 N -0.53 -10.82 4.09 -229.28 -0.94 -11.76 16 18 C 0.03 0.66 5.38 -3.77 -0.02 0.64 16 19 C 0.06 0.90 6.72 -3.77 -0.03 0.88 16 20 N -0.69 -10.31 6.91 -113.63 -0.79 -11.09 16 21 C 0.06 0.94 6.72 -3.77 -0.03 0.91 16 22 C 0.01 0.26 5.25 -3.77 -0.02 0.24 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.12 2.46 7.91 -52.48 -0.42 2.05 16 25 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 26 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 27 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 28 H 0.12 2.66 7.99 -52.49 -0.42 2.24 16 29 H 0.09 1.91 6.98 -51.93 -0.36 1.55 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.33 4.65 8.89 -39.29 -0.35 4.31 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.40 6.33 -51.93 -0.33 1.07 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -27.07 299.15 -9.95 -37.02 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.60 Total: 7.76 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.83 Total: -18.54 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -1.01 Total: -46.51 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.07 -9.95 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.403 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds