Wall clock time and date at job start Mon Mar 30 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00460 * 2 1 4 4 H 1.48499 * 109.47453 * 239.99841 * 3 2 1 5 5 H 1.48508 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47559 * 119.99475 * 3 2 1 7 7 C 1.37880 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99629 * 185.11837 * 7 2 1 9 9 C 1.50691 * 120.00371 * 5.12499 * 7 2 1 10 10 H 1.09001 * 109.47219 * 24.89295 * 9 7 2 11 11 C 1.50699 * 109.47314 * 264.89608 * 9 7 2 12 12 C 1.38235 * 119.99843 * 286.27981 * 11 9 7 13 13 C 1.38236 * 120.00056 * 179.76371 * 12 11 9 14 14 C 1.38238 * 119.99684 * 0.50623 * 13 12 11 15 15 C 1.38230 * 119.99876 * 359.74569 * 14 13 12 16 16 C 1.38233 * 120.00660 * 0.02562 * 15 14 13 17 17 N 1.46897 * 109.47434 * 144.89390 * 9 7 2 18 18 C 1.46954 * 111.00048 * 299.99984 * 17 9 7 19 19 C 1.53052 * 109.36573 * 176.81012 * 18 17 9 20 20 N 1.46958 * 109.36323 * 58.40226 * 19 18 17 21 21 C 1.46954 * 110.87956 * 300.67964 * 20 19 18 22 22 C 1.46958 * 111.00038 * 176.20078 * 17 9 7 23 23 H 0.97002 * 119.99942 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00143 * 359.97438 * 12 11 9 25 25 H 1.08000 * 120.00156 * 180.23274 * 13 12 11 26 26 H 1.08005 * 119.99970 * 179.72656 * 14 13 12 27 27 H 1.08011 * 119.99880 * 179.97438 * 15 14 13 28 28 H 1.07996 * 120.00752 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.49167 * 56.84589 * 18 17 9 30 30 H 1.09001 * 109.51102 * 296.78638 * 18 17 9 31 31 H 1.09001 * 109.48885 * 298.43666 * 19 18 17 32 32 H 1.08998 * 109.48967 * 178.36785 * 19 18 17 33 33 H 1.00900 * 111.00282 * 64.54658 * 20 19 18 34 34 H 1.09001 * 109.48633 * 179.29156 * 21 20 19 35 35 H 1.09003 * 109.48871 * 299.35109 * 21 20 19 36 36 H 1.08998 * 109.48787 * 303.15516 * 22 17 9 37 37 H 1.09003 * 109.48768 * 63.20245 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0840 9 6 1.2554 -2.4966 -0.1155 10 1 0.3026 -2.3245 -0.6161 11 6 1.0055 -3.0567 1.2611 12 6 2.0453 -3.6189 1.9777 13 6 1.8171 -4.1283 3.2424 14 6 0.5469 -4.0849 3.7861 15 6 -0.4939 -3.5274 3.0674 16 6 -0.2648 -3.0137 1.8046 17 7 2.0529 -3.4523 -0.8956 18 6 2.3167 -2.9386 -2.2469 19 6 3.2143 -3.9245 -2.9984 20 7 2.5552 -5.2367 -3.0564 21 6 2.2913 -5.7504 -1.7051 22 6 1.3938 -4.7645 -0.9535 23 1 -0.4850 0.8401 -0.0004 24 1 3.0367 -3.6572 1.5510 25 1 2.6303 -4.5642 3.8038 26 1 0.3677 -4.4869 4.7725 27 1 -1.4864 -3.4938 3.4920 28 1 -1.0780 -2.5785 1.2429 29 1 2.8163 -1.9723 -2.1775 30 1 1.3747 -2.8232 -2.7829 31 1 4.1670 -4.0189 -2.4774 32 1 3.3876 -3.5596 -4.0108 33 1 1.7052 -5.1908 -3.5981 34 1 1.7918 -6.7168 -1.7745 35 1 3.2336 -5.8655 -1.1693 36 1 1.2205 -5.1294 0.0588 37 1 0.4408 -4.6701 -1.4743 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:34 Heat of formation + Delta-G solvation = 13.855593 kcal Electronic energy + Delta-G solvation = -18348.378146 eV Core-core repulsion = 15703.299101 eV Total energy + Delta-G solvation = -2645.079045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58221 -39.21204 -36.07733 -34.09753 -32.00521 -31.61564 -31.42670 -28.63591 -26.18440 -24.33414 -23.83096 -23.14697 -21.71039 -21.03743 -18.50189 -17.47848 -17.33597 -16.43103 -16.01829 -15.77372 -15.60843 -15.34393 -15.14562 -14.98352 -14.12911 -14.07862 -13.76496 -13.50172 -13.35833 -12.91083 -12.81154 -12.71472 -12.31437 -12.13781 -11.89870 -11.88306 -11.86396 -11.55125 -11.23266 -10.63055 -9.59031 -9.41772 -9.28585 -8.95683 -8.18619 -6.28855 0.73321 0.77951 1.37964 1.38854 1.46260 2.36037 2.97774 3.22610 3.31086 3.46123 4.18948 4.24817 4.25381 4.31272 4.32648 4.41758 4.43389 4.47760 4.64800 4.72971 4.86007 4.89511 4.96066 5.05266 5.12858 5.14633 5.30596 5.40428 5.44304 5.65198 5.79286 5.80827 5.99601 6.06714 6.07767 6.30594 6.42167 6.47012 6.69772 6.88428 7.38169 8.86380 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.011887 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.842091 B = 2354.911505 C = 3864.731996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.055 0.945 9 C 0.244 3.756 10 H -0.011 1.011 11 C -0.044 4.044 12 C -0.115 4.115 13 C -0.128 4.128 14 C -0.143 4.143 15 C -0.130 4.130 16 C -0.140 4.140 17 N -0.528 5.528 18 C 0.036 3.964 19 C 0.070 3.930 20 N -0.682 5.682 21 C 0.071 3.929 22 C 0.019 3.981 23 H 0.262 0.738 24 H 0.112 0.888 25 H 0.142 0.858 26 H 0.146 0.854 27 H 0.131 0.869 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.000 1.000 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.339 0.661 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -9.197 0.506 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.137 3.863 10 H 0.006 0.994 11 C -0.045 4.045 12 C -0.133 4.133 13 C -0.146 4.146 14 C -0.161 4.161 15 C -0.148 4.148 16 C -0.159 4.159 17 N -0.253 5.253 18 C -0.094 4.094 19 C -0.060 4.060 20 N -0.310 5.310 21 C -0.059 4.059 22 C -0.111 4.111 23 H 0.071 0.929 24 H 0.131 0.869 25 H 0.159 0.841 26 H 0.164 0.836 27 H 0.149 0.851 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 3.700 -9.499 0.639 10.215 hybrid contribution -1.702 2.215 -0.161 2.798 sum 1.999 -7.284 0.478 7.568 Atomic orbital electron populations 1.70060 1.07277 1.27497 1.50546 1.25718 0.95593 1.02443 0.94469 0.85670 0.78428 0.78950 0.79023 1.19147 1.21149 1.19831 1.21054 0.93162 0.90104 1.49898 0.92641 1.18187 0.91255 0.89372 0.87463 0.99359 1.20316 0.92732 0.93254 0.98177 1.20957 0.98480 0.99015 0.94891 1.21391 0.97823 1.00316 0.95080 1.21267 0.92664 1.01471 1.00650 1.21258 1.00103 0.99331 0.94134 1.21024 0.96718 1.01051 0.97137 1.62231 1.47145 1.02481 1.13438 1.22578 0.97708 1.00093 0.89061 1.22068 0.97106 0.86867 0.99933 1.60879 1.30069 1.25779 1.14259 1.22050 0.99229 0.96410 0.88210 1.22821 0.95205 0.92085 1.00948 0.92939 0.86944 0.84052 0.83615 0.85113 0.89350 0.91420 0.98185 0.90503 0.88980 0.84353 0.88721 0.90437 0.91366 0.97837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.92 12.84 21.45 0.28 -52.65 16 2 C 0.02 0.99 5.45 84.66 0.46 1.45 16 3 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.50 -27.33 6.95 25.60 0.18 -27.15 16 8 H 0.06 3.04 7.82 -2.91 -0.02 3.01 16 9 C 0.24 12.26 1.75 43.42 0.08 12.33 16 10 H -0.01 -0.67 7.17 -2.39 -0.02 -0.69 16 11 C -0.04 -2.03 3.51 -19.87 -0.07 -2.10 16 12 C -0.11 -4.71 8.46 22.27 0.19 -4.52 16 13 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 14 C -0.14 -4.56 10.05 22.27 0.22 -4.34 16 15 C -0.13 -4.77 10.05 22.27 0.22 -4.54 16 16 C -0.14 -6.34 9.67 22.27 0.22 -6.13 16 17 N -0.53 -22.35 4.09 -879.31 -3.60 -25.95 16 18 C 0.04 1.41 5.38 86.31 0.46 1.88 16 19 C 0.07 2.13 6.72 86.31 0.58 2.71 16 20 N -0.68 -19.06 6.91 -513.43 -3.55 -22.61 16 21 C 0.07 2.03 6.72 86.31 0.58 2.61 16 22 C 0.02 0.71 5.25 86.31 0.45 1.16 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.11 4.65 7.91 -2.91 -0.02 4.63 16 25 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 26 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 27 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 28 H 0.09 4.37 7.99 -2.91 -0.02 4.35 16 29 H 0.07 2.97 6.98 -2.39 -0.02 2.96 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.34 8.93 8.89 -89.69 -0.80 8.14 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.57 6.33 -2.39 -0.02 2.56 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -61.12 299.15 -0.80 -61.92 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.25 Total: 24.34 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 3.80 Total: -30.72 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -6.87 Total: -101.21 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -61.12 -0.80 -61.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.773 kcal (2) G-P(sol) polarization free energy of solvation -61.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds