Wall clock time and date at job start Mon Mar 30 2020 03:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47491 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47031 * 300.00226 * 3 2 1 6 6 H 1.48501 * 109.47207 * 59.99994 * 3 2 1 7 7 C 1.37884 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99364 * 170.42698 * 7 2 1 9 9 C 1.50692 * 120.00040 * 350.42728 * 7 2 1 10 10 H 1.09002 * 109.47313 * 174.54780 * 9 7 2 11 11 C 1.50704 * 109.47413 * 294.55035 * 9 7 2 12 12 C 1.38231 * 119.99773 * 87.23088 * 11 9 7 13 13 C 1.38240 * 119.99770 * 180.25754 * 12 11 9 14 14 C 1.38232 * 119.99762 * 359.53495 * 13 12 11 15 15 C 1.38231 * 120.00086 * 0.42180 * 14 13 12 16 16 C 1.38227 * 119.99924 * 267.21304 * 11 9 7 17 17 N 1.46900 * 109.47334 * 54.55020 * 9 7 2 18 18 C 1.46962 * 111.00261 * 51.99199 * 17 9 7 19 19 C 1.53044 * 109.36971 * 183.19137 * 18 17 9 20 20 N 1.46963 * 109.36408 * 301.59840 * 19 18 17 21 21 C 1.46964 * 110.87737 * 59.32016 * 20 19 18 22 22 C 1.46954 * 111.00212 * 175.79347 * 17 9 7 23 23 H 0.96996 * 119.99901 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.00504 * 359.97438 * 12 11 9 25 25 H 1.08003 * 119.99877 * 179.72259 * 13 12 11 26 26 H 1.07999 * 119.99997 * 180.21298 * 14 13 12 27 27 H 1.08000 * 120.00110 * 179.78859 * 15 14 13 28 28 H 1.07999 * 120.00257 * 359.97438 * 16 11 9 29 29 H 1.09002 * 109.48595 * 303.16253 * 18 17 9 30 30 H 1.09003 * 109.48326 * 63.21625 * 18 17 9 31 31 H 1.08999 * 109.49108 * 181.63539 * 19 18 17 32 32 H 1.08996 * 109.50786 * 61.57418 * 19 18 17 33 33 H 1.00898 * 111.00030 * 295.45457 * 20 19 18 34 34 H 1.09002 * 109.48449 * 180.71476 * 21 20 19 35 35 H 1.08998 * 109.48688 * 60.64627 * 21 20 19 36 36 H 1.08999 * 109.48868 * 296.77946 * 22 17 9 37 37 H 1.09000 * 109.49348 * 56.82267 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2006 -0.1550 9 6 1.2668 -2.4900 0.2181 10 1 1.9546 -3.3257 0.0895 11 6 0.6992 -2.5167 1.6140 12 6 -0.5456 -1.9704 1.8645 13 6 -1.0639 -1.9902 3.1459 14 6 -0.3414 -2.5648 4.1748 15 6 0.9030 -3.1119 3.9241 16 6 1.4234 -3.0878 2.6436 17 7 0.1737 -2.6009 -0.7570 18 6 0.6653 -2.3885 -2.1256 19 6 -0.5134 -2.4330 -3.1009 20 7 -1.1937 -3.7304 -2.9842 21 6 -1.6853 -3.9427 -1.6156 22 6 -0.5066 -3.8982 -0.6403 23 1 -0.4850 0.8400 0.0004 24 1 -1.1113 -1.5241 1.0601 25 1 -2.0346 -1.5594 3.3425 26 1 -0.7478 -2.5834 5.1753 27 1 1.4689 -3.5578 4.7286 28 1 2.3956 -3.5152 2.4478 29 1 1.1539 -1.4162 -2.1897 30 1 1.3788 -3.1719 -2.3813 31 1 -0.1475 -2.3046 -4.1196 32 1 -1.2136 -1.6325 -2.8623 33 1 -0.5873 -4.4839 -3.2715 34 1 -2.1739 -4.9150 -1.5515 35 1 -2.3987 -3.1593 -1.3598 36 1 0.1935 -4.6988 -0.8792 37 1 -0.8721 -4.0269 0.3785 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:36 Heat of formation + Delta-G solvation = 45.022871 kcal Electronic energy + Delta-G solvation = -18730.870358 eV Core-core repulsion = 16087.142828 eV Total energy + Delta-G solvation = -2643.727530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.83555 -37.53735 -34.39276 -31.87893 -30.28970 -30.05585 -29.52870 -26.84239 -24.31644 -22.63586 -22.05492 -21.37943 -20.02934 -19.40738 -16.48672 -15.83350 -15.35189 -14.73912 -14.27454 -14.07360 -13.91236 -13.55157 -13.41819 -13.25581 -12.45160 -12.16475 -12.06610 -11.77788 -11.57653 -11.27318 -10.98630 -10.77665 -10.62553 -10.42624 -10.27186 -10.18634 -10.01519 -9.66005 -9.20875 -8.50681 -7.88484 -7.79640 -7.45262 -6.85853 -5.96584 -4.14842 2.43331 2.54246 3.24977 3.34717 3.37744 4.36881 4.80766 4.91376 5.05845 5.31243 5.76902 5.80037 5.88029 5.91480 5.93767 6.00451 6.05245 6.12412 6.28164 6.35714 6.48657 6.57928 6.61386 6.70960 6.84124 6.97753 7.02575 7.13807 7.24104 7.44417 7.53757 7.64564 7.77599 7.86903 7.93585 8.06748 8.23950 8.41773 8.61556 8.95166 9.50732 10.96519 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.012742 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.675791 B = 2196.886733 C = 3430.491551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.088 3.912 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.247 3.753 10 H -0.006 1.006 11 C -0.029 4.029 12 C -0.068 4.068 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.142 4.142 16 C -0.137 4.137 17 N -0.482 5.482 18 C 0.047 3.953 19 C 0.060 3.940 20 N -0.691 5.691 21 C 0.064 3.936 22 C 0.012 3.988 23 H 0.256 0.744 24 H 0.161 0.839 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.095 0.905 30 H -0.001 1.001 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.327 0.673 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.006 0.994 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 -5.167 -0.111 5.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.120 4.120 3 Si 0.705 3.295 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.141 3.859 10 H 0.012 0.988 11 C -0.030 4.030 12 C -0.087 4.087 13 C -0.166 4.166 14 C -0.171 4.171 15 C -0.160 4.160 16 C -0.156 4.156 17 N -0.207 5.207 18 C -0.083 4.083 19 C -0.070 4.070 20 N -0.319 5.319 21 C -0.066 4.066 22 C -0.119 4.119 23 H 0.066 0.934 24 H 0.178 0.822 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.017 0.983 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.024 0.976 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.133 -4.424 -0.266 5.428 hybrid contribution 2.092 0.235 0.673 2.210 sum -1.041 -4.189 0.408 4.336 Atomic orbital electron populations 1.70070 1.05393 1.25396 1.44620 1.24879 0.94669 0.98363 0.94123 0.86780 0.80530 0.84509 0.77668 1.19923 1.20992 1.20925 1.20827 0.93604 0.90078 1.52474 0.92433 1.18236 0.86957 0.95131 0.85609 0.98787 1.20281 0.93060 0.93081 0.96546 1.21766 0.95875 0.94560 0.96473 1.21190 0.99575 1.01505 0.94314 1.20805 0.95942 1.02269 0.98043 1.20764 0.96353 1.02592 0.96292 1.20893 0.99459 1.02050 0.93177 1.62171 1.29837 1.25604 1.03075 1.22395 0.94869 1.01762 0.89273 1.22106 0.95780 0.91606 0.97496 1.60876 1.42375 1.04648 1.23993 1.22005 0.96848 1.00839 0.86869 1.22847 0.96626 0.92043 1.00353 0.93366 0.82165 0.87993 0.88240 0.88059 0.87939 0.88700 0.98263 0.92055 0.90135 0.85730 0.92024 0.90332 0.97619 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.82 9.22 55.43 0.51 -20.31 16 2 C 0.09 2.23 4.60 -17.82 -0.08 2.15 16 3 Si 0.88 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.53 -13.64 7.17 -34.44 -0.25 -13.89 16 8 H 0.06 1.51 7.83 -52.48 -0.41 1.10 16 9 C 0.25 5.86 1.95 -70.02 -0.14 5.72 16 10 H -0.01 -0.14 8.06 -51.93 -0.42 -0.55 16 11 C -0.03 -0.65 3.86 -104.63 -0.40 -1.06 16 12 C -0.07 -1.55 7.09 -39.58 -0.28 -1.83 16 13 C -0.15 -2.99 10.05 -39.58 -0.40 -3.39 16 14 C -0.15 -2.88 10.05 -39.59 -0.40 -3.28 16 15 C -0.14 -2.72 10.05 -39.58 -0.40 -3.11 16 16 C -0.14 -2.91 9.69 -39.59 -0.38 -3.29 16 17 N -0.48 -10.47 2.42 -229.27 -0.56 -11.03 16 18 C 0.05 0.96 5.24 -3.77 -0.02 0.94 16 19 C 0.06 1.07 6.72 -3.77 -0.03 1.04 16 20 N -0.69 -11.40 6.91 -113.63 -0.79 -12.19 16 21 C 0.06 1.09 6.72 -3.76 -0.03 1.06 16 22 C 0.01 0.22 5.27 -3.77 -0.02 0.20 16 23 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 24 H 0.16 3.91 5.67 -52.49 -0.30 3.62 16 25 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 26 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 29 H 0.09 2.20 6.33 -51.93 -0.33 1.87 16 30 H 0.00 -0.01 8.14 -51.93 -0.42 -0.44 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.33 4.96 8.89 -39.29 -0.35 4.61 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.07 1.38 6.46 -51.93 -0.34 1.05 16 LS Contribution 290.51 15.07 4.38 4.38 Total: -1.00 -25.61 290.51 -9.80 -35.40 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.50 Total: 7.27 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -2.82 Total: -18.73 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.83 Total: -43.52 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -25.61 -9.80 -35.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.426 kcal (2) G-P(sol) polarization free energy of solvation -25.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds