Wall clock time and date at job start Mon Mar 30 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47491 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47031 * 300.00226 * 3 2 1 6 6 H 1.48501 * 109.47207 * 59.99994 * 3 2 1 7 7 C 1.37884 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99364 * 170.42698 * 7 2 1 9 9 C 1.50692 * 120.00040 * 350.42728 * 7 2 1 10 10 H 1.09002 * 109.47313 * 174.54780 * 9 7 2 11 11 C 1.50704 * 109.47413 * 294.55035 * 9 7 2 12 12 C 1.38231 * 119.99773 * 87.23088 * 11 9 7 13 13 C 1.38240 * 119.99770 * 180.25754 * 12 11 9 14 14 C 1.38232 * 119.99762 * 359.53495 * 13 12 11 15 15 C 1.38231 * 120.00086 * 0.42180 * 14 13 12 16 16 C 1.38227 * 119.99924 * 267.21304 * 11 9 7 17 17 N 1.46900 * 109.47334 * 54.55020 * 9 7 2 18 18 C 1.46962 * 111.00261 * 51.99199 * 17 9 7 19 19 C 1.53044 * 109.36971 * 183.19137 * 18 17 9 20 20 N 1.46963 * 109.36408 * 301.59840 * 19 18 17 21 21 C 1.46964 * 110.87737 * 59.32016 * 20 19 18 22 22 C 1.46954 * 111.00212 * 175.79347 * 17 9 7 23 23 H 0.96996 * 119.99901 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.00504 * 359.97438 * 12 11 9 25 25 H 1.08003 * 119.99877 * 179.72259 * 13 12 11 26 26 H 1.07999 * 119.99997 * 180.21298 * 14 13 12 27 27 H 1.08000 * 120.00110 * 179.78859 * 15 14 13 28 28 H 1.07999 * 120.00257 * 359.97438 * 16 11 9 29 29 H 1.09002 * 109.48595 * 303.16253 * 18 17 9 30 30 H 1.09003 * 109.48326 * 63.21625 * 18 17 9 31 31 H 1.08999 * 109.49108 * 181.63539 * 19 18 17 32 32 H 1.08996 * 109.50786 * 61.57418 * 19 18 17 33 33 H 1.00898 * 111.00030 * 295.45457 * 20 19 18 34 34 H 1.09002 * 109.48449 * 180.71476 * 21 20 19 35 35 H 1.08998 * 109.48688 * 60.64627 * 21 20 19 36 36 H 1.08999 * 109.48868 * 296.77946 * 22 17 9 37 37 H 1.09000 * 109.49348 * 56.82267 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2006 -0.1550 9 6 1.2668 -2.4900 0.2181 10 1 1.9546 -3.3257 0.0895 11 6 0.6992 -2.5167 1.6140 12 6 -0.5456 -1.9704 1.8645 13 6 -1.0639 -1.9902 3.1459 14 6 -0.3414 -2.5648 4.1748 15 6 0.9030 -3.1119 3.9241 16 6 1.4234 -3.0878 2.6436 17 7 0.1737 -2.6009 -0.7570 18 6 0.6653 -2.3885 -2.1256 19 6 -0.5134 -2.4330 -3.1009 20 7 -1.1937 -3.7304 -2.9842 21 6 -1.6853 -3.9427 -1.6156 22 6 -0.5066 -3.8982 -0.6403 23 1 -0.4850 0.8400 0.0004 24 1 -1.1113 -1.5241 1.0601 25 1 -2.0346 -1.5594 3.3425 26 1 -0.7478 -2.5834 5.1753 27 1 1.4689 -3.5578 4.7286 28 1 2.3956 -3.5152 2.4478 29 1 1.1539 -1.4162 -2.1897 30 1 1.3788 -3.1719 -2.3813 31 1 -0.1475 -2.3046 -4.1196 32 1 -1.2136 -1.6325 -2.8623 33 1 -0.5873 -4.4839 -3.2715 34 1 -2.1739 -4.9150 -1.5515 35 1 -2.3987 -3.1593 -1.3598 36 1 0.1935 -4.6988 -0.8792 37 1 -0.8721 -4.0269 0.3785 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:35 Heat of formation + Delta-G solvation = 30.505725 kcal Electronic energy + Delta-G solvation = -18731.499869 eV Core-core repulsion = 16087.142828 eV Total energy + Delta-G solvation = -2644.357041 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46910 -39.08983 -36.06235 -33.70880 -31.87160 -31.64526 -31.12280 -28.62358 -26.01435 -24.21460 -23.69315 -22.97460 -21.64962 -21.03642 -18.34535 -17.38685 -17.01890 -16.53747 -15.83594 -15.67810 -15.48090 -15.22724 -15.00321 -14.84759 -14.12075 -13.84358 -13.74026 -13.37458 -13.22528 -12.86086 -12.76846 -12.56874 -12.29981 -12.03876 -11.88183 -11.81142 -11.70561 -11.39035 -10.96798 -10.44987 -9.47627 -9.28480 -9.11892 -8.56392 -7.89019 -6.13232 0.81178 0.94791 1.38473 1.44441 1.50631 2.45219 3.13590 3.33829 3.43868 3.57708 4.28104 4.32292 4.35298 4.38039 4.42018 4.50137 4.53569 4.58026 4.70416 4.81066 4.93430 4.94988 5.03587 5.15529 5.21046 5.30413 5.41641 5.48624 5.62603 5.72979 5.85876 5.97775 6.10227 6.17626 6.32303 6.53187 6.55307 6.60124 6.89161 7.09519 7.53217 9.00650 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.012742 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.675791 B = 2196.886733 C = 3430.491551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.062 3.938 3 Si 0.925 3.075 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.286 1.286 7 C -0.551 4.551 8 H 0.039 0.961 9 C 0.248 3.752 10 H -0.026 1.026 11 C -0.050 4.050 12 C -0.084 4.084 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.137 4.137 16 C -0.154 4.154 17 N -0.490 5.490 18 C 0.050 3.950 19 C 0.072 3.928 20 N -0.682 5.682 21 C 0.073 3.927 22 C 0.017 3.983 23 H 0.254 0.746 24 H 0.138 0.862 25 H 0.122 0.878 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.105 0.895 29 H 0.065 0.935 30 H -0.003 1.003 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.339 0.661 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.005 0.995 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -5.796 0.779 6.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.146 4.146 3 Si 0.752 3.248 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.213 1.213 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.141 3.859 10 H -0.009 1.009 11 C -0.051 4.051 12 C -0.102 4.102 13 C -0.171 4.171 14 C -0.164 4.164 15 C -0.155 4.155 16 C -0.173 4.173 17 N -0.214 5.214 18 C -0.079 4.079 19 C -0.058 4.058 20 N -0.310 5.310 21 C -0.057 4.057 22 C -0.114 4.114 23 H 0.064 0.936 24 H 0.156 0.844 25 H 0.140 0.860 26 H 0.155 0.845 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.015 0.985 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.024 0.976 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.968 -5.066 0.612 6.464 hybrid contribution 2.358 0.371 0.448 2.429 sum -1.610 -4.695 1.060 5.075 Atomic orbital electron populations 1.70177 1.05763 1.25503 1.44623 1.25250 0.95297 0.99999 0.94036 0.86055 0.79283 0.82014 0.77459 1.20474 1.20444 1.21258 1.20878 0.92911 0.91584 1.53519 0.94307 1.18141 0.87226 0.93407 0.87102 1.00877 1.20260 0.93825 0.94658 0.96335 1.21562 0.95850 0.95644 0.97151 1.21451 1.00592 1.01383 0.93706 1.21215 0.95420 1.00452 0.99295 1.21148 0.96651 1.01584 0.96111 1.21097 0.99731 1.02461 0.94021 1.62083 1.29069 1.27231 1.03051 1.22352 0.95917 0.99961 0.89717 1.21957 0.94118 0.91889 0.97814 1.60858 1.42201 1.04367 1.23547 1.21968 0.95525 1.01996 0.86233 1.22850 0.97137 0.90687 1.00679 0.93578 0.84434 0.86007 0.84505 0.84673 0.87670 0.91696 0.98475 0.89697 0.92036 0.84351 0.88978 0.91706 0.97647 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.73 9.22 21.45 0.20 -42.53 16 2 C 0.06 3.19 4.60 84.66 0.39 3.58 16 3 Si 0.92 42.17 29.55 68.60 2.03 44.20 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.55 -29.28 7.17 25.60 0.18 -29.09 16 8 H 0.04 2.13 7.83 -2.91 -0.02 2.11 16 9 C 0.25 12.17 1.95 43.42 0.08 12.26 16 10 H -0.03 -1.35 8.06 -2.39 -0.02 -1.37 16 11 C -0.05 -2.31 3.86 -19.87 -0.08 -2.39 16 12 C -0.08 -3.78 7.09 22.27 0.16 -3.62 16 13 C -0.15 -5.94 10.05 22.27 0.22 -5.72 16 14 C -0.15 -5.03 10.05 22.27 0.22 -4.81 16 15 C -0.14 -4.88 10.05 22.27 0.22 -4.66 16 16 C -0.15 -6.48 9.69 22.27 0.22 -6.26 16 17 N -0.49 -21.77 2.42 -879.29 -2.13 -23.90 16 18 C 0.05 2.13 5.24 86.31 0.45 2.58 16 19 C 0.07 2.54 6.72 86.31 0.58 3.12 16 20 N -0.68 -21.31 6.91 -513.41 -3.55 -24.86 16 21 C 0.07 2.36 6.72 86.31 0.58 2.94 16 22 C 0.02 0.64 5.27 86.31 0.45 1.09 16 23 H 0.25 12.79 8.31 -92.71 -0.77 12.02 16 24 H 0.14 6.85 5.67 -2.91 -0.02 6.83 16 25 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 26 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 27 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 28 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 29 H 0.06 3.12 6.33 -2.39 -0.02 3.10 16 30 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.34 9.52 8.89 -89.70 -0.80 8.72 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.06 2.42 6.46 -2.39 -0.02 2.40 16 Total: -1.00 -55.45 290.51 0.49 -54.96 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.25 Total: 23.12 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.69 Total: -30.97 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -5.48 Total: -91.30 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -55.45 0.49 -54.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.462 kcal (2) G-P(sol) polarization free energy of solvation -55.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds