Wall clock time and date at job start Mon Mar 30 2020 04:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48562 * 111.00440 * 2 1 4 4 C 1.54378 * 104.59645 * 200.95608 * 3 2 1 5 5 C 1.54266 * 105.05866 * 23.85333 * 4 3 2 6 6 H 1.08997 * 110.32000 * 240.99580 * 5 4 3 7 7 N 1.46500 * 110.32022 * 118.89457 * 5 4 3 8 8 C 1.38866 * 119.99564 * 154.99900 * 7 5 4 9 9 C 1.39565 * 119.83941 * 359.72565 * 8 7 5 10 10 C 1.36343 * 120.15629 * 179.72150 * 9 8 7 11 11 C 1.40891 * 119.83656 * 0.55015 * 10 9 8 12 12 C 1.41133 * 120.15624 * 179.70285 * 11 10 9 13 13 H 1.07997 * 120.00248 * 155.10803 * 12 11 10 14 14 C 1.39861 * 120.00067 * 335.10740 * 12 11 10 15 15 N 1.30905 * 120.00042 * 342.13153 * 14 12 11 16 16 Si 1.86801 * 120.00156 * 162.12818 * 14 12 11 17 17 H 1.48499 * 109.46813 * 94.65571 * 16 14 12 18 18 H 1.48506 * 109.47259 * 214.65394 * 16 14 12 19 19 H 1.48493 * 109.47064 * 334.65616 * 16 14 12 20 20 C 1.40885 * 119.68777 * 359.71990 * 11 10 9 21 21 C 1.36336 * 119.83934 * 0.02562 * 20 11 10 22 22 C 1.48561 * 111.00267 * 244.57543 * 2 1 3 23 23 H 1.09007 * 109.47004 * 59.87898 * 1 2 3 24 24 H 1.09004 * 109.47439 * 179.86979 * 1 2 3 25 25 H 1.09000 * 109.47148 * 299.87644 * 1 2 3 26 26 H 1.08998 * 110.40958 * 82.17397 * 3 2 1 27 27 H 1.09003 * 110.50620 * 319.78969 * 3 2 1 28 28 H 1.08993 * 110.32264 * 264.95619 * 4 3 2 29 29 H 1.09003 * 110.40863 * 142.78843 * 4 3 2 30 30 H 0.96994 * 120.00573 * 334.71934 * 7 5 4 31 31 H 1.07994 * 119.92289 * 359.97438 * 9 8 7 32 32 H 1.07999 * 120.08251 * 180.27306 * 10 9 8 33 33 H 0.97005 * 119.99884 * 179.97438 * 15 14 12 34 34 H 1.07995 * 120.08311 * 179.97438 * 20 11 10 35 35 H 1.08001 * 119.92226 * 179.97438 * 21 20 11 36 36 H 1.09007 * 110.40926 * 40.27076 * 22 2 1 37 37 H 1.08994 * 110.41533 * 277.82074 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5343 5 6 3.4433 -0.0541 -1.3584 6 1 4.1496 -0.7687 -0.9361 7 7 3.7799 0.2274 -2.7562 8 6 4.3394 -0.7659 -3.5491 9 6 4.5849 -2.0293 -3.0093 10 6 5.1288 -3.0110 -3.7835 11 6 5.4538 -2.7440 -5.1282 12 6 6.0229 -3.7534 -5.9339 13 1 5.9082 -3.7164 -7.0072 14 6 6.7354 -4.8016 -5.3426 15 7 7.1771 -4.6827 -4.1160 16 14 7.0565 -6.3713 -6.3029 17 1 8.3906 -6.2913 -6.9502 18 1 7.0240 -7.5329 -5.3781 19 1 6.0105 -6.5377 -7.3436 20 6 5.2084 -1.4646 -5.6646 21 6 4.6592 -0.4941 -4.8802 22 6 2.0014 -0.5954 -1.2526 23 1 -0.3633 0.5157 -0.8890 24 1 -0.3634 -1.0277 -0.0023 25 1 -0.3633 0.5119 0.8911 26 1 2.0078 1.7916 1.0120 27 1 1.4104 2.0229 -0.6591 28 1 4.1482 1.1747 0.2935 29 1 3.6955 2.0992 -1.1695 30 1 3.6082 1.1062 -3.1289 31 1 4.3397 -2.2311 -1.9771 32 1 5.3142 -3.9896 -3.3658 33 1 7.6710 -5.4098 -3.7058 34 1 5.4554 -1.2529 -6.6944 35 1 4.4709 0.4873 -5.2899 36 1 1.4099 -0.2713 -2.1089 37 1 2.0079 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061986483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:20 Heat of formation + Delta-G solvation = 31.100611 kcal Electronic energy + Delta-G solvation = -17361.514584 eV Core-core repulsion = 14717.183339 eV Total energy + Delta-G solvation = -2644.331245 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.18197 -37.55207 -34.76586 -33.02273 -31.00432 -29.49422 -28.78916 -27.66499 -25.44695 -24.01312 -21.59083 -21.13149 -20.56588 -19.48627 -17.20637 -16.60822 -15.82338 -15.36059 -14.89745 -14.39700 -14.24766 -13.74763 -13.53634 -12.90457 -12.68078 -12.40892 -12.17121 -12.01762 -11.73798 -11.51356 -11.42435 -11.32898 -11.01855 -10.93814 -10.75543 -10.60046 -10.42041 -9.69957 -9.27626 -9.19093 -8.61373 -8.48454 -7.48092 -6.63197 -6.38408 -4.02478 2.92226 3.11335 3.15987 3.20899 3.35726 3.92010 4.06667 4.47977 4.71583 4.73183 4.85556 5.08426 5.29447 5.36999 5.45766 5.60138 5.69203 5.75815 5.83327 5.87518 5.99330 6.18815 6.20895 6.29353 6.40262 6.71714 6.94855 6.96311 6.99947 7.21482 7.36734 7.57524 7.70356 7.85380 8.16591 8.30425 8.50523 8.70569 8.80913 9.07276 9.16349 10.38562 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039866 B = 0.004666 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.190061 B = 5998.962248 C = 6279.061284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.517 5.517 3 C 0.033 3.967 4 C -0.132 4.132 5 C 0.160 3.840 6 H 0.086 0.914 7 N -0.753 5.753 8 C 0.089 3.911 9 C -0.162 4.162 10 C -0.124 4.124 11 C 0.076 3.924 12 C -0.468 4.468 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.807 5.807 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.188 4.188 21 C -0.158 4.158 22 C 0.016 3.984 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.383 0.617 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.276 0.724 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 7.855 6.812 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.242 5.242 3 C -0.096 4.096 4 C -0.170 4.170 5 C 0.052 3.948 6 H 0.104 0.896 7 N -0.388 5.388 8 C -0.007 4.007 9 C -0.184 4.184 10 C -0.144 4.144 11 C 0.073 3.927 12 C -0.499 4.499 13 H 0.090 0.910 14 C -0.140 4.140 15 N -0.434 5.434 16 Si 0.726 3.274 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.208 4.208 21 C -0.180 4.180 22 C -0.114 4.114 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.216 0.784 31 H 0.108 0.892 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.967 7.298 7.604 13.212 hybrid contribution -0.184 0.038 -1.228 1.242 sum -8.151 7.336 6.376 12.685 Atomic orbital electron populations 1.22486 0.88357 1.02165 1.00400 1.65355 1.07936 1.15026 1.35835 1.23096 0.95337 0.90388 1.00731 1.22609 0.96366 0.98127 0.99937 1.21267 0.94445 0.95837 0.83223 0.89590 1.44015 1.72844 1.12909 1.09042 1.17359 1.03360 0.89418 0.90612 1.20130 1.06902 0.93102 0.98251 1.20939 1.00129 0.98395 0.94975 1.17497 0.91521 0.91237 0.92484 1.19365 1.29990 1.05941 0.94589 0.90977 1.25788 0.93794 0.99472 0.94929 1.69859 1.27600 1.32008 1.13979 0.86421 0.79268 0.81323 0.80348 1.19862 1.20265 1.18677 1.20535 1.08043 0.93614 0.98641 1.19800 1.07124 0.98208 0.92885 1.23792 0.96763 1.00694 0.90103 0.95543 0.91268 0.91585 0.90367 0.94092 0.90463 0.90889 0.78449 0.89213 0.86428 0.91324 0.89106 0.89699 0.93321 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.53 60.06 0.57 0.73 16 2 N -0.52 -6.64 5.66 -238.23 -1.35 -7.99 16 3 C 0.03 0.37 6.49 -2.18 -0.01 0.35 16 4 C -0.13 -1.59 6.76 -25.35 -0.17 -1.77 16 5 C 0.16 2.44 3.10 -66.55 -0.21 2.24 16 6 H 0.09 1.46 6.37 -51.93 -0.33 1.13 16 7 N -0.75 -12.99 5.21 -50.69 -0.26 -13.25 16 8 C 0.09 1.93 6.67 -83.68 -0.56 1.37 16 9 C -0.16 -3.80 9.14 -39.77 -0.36 -4.16 16 10 C -0.12 -3.28 8.63 -39.26 -0.34 -3.62 16 11 C 0.08 2.05 5.57 -106.79 -0.59 1.46 16 12 C -0.47 -12.80 9.03 -37.88 -0.34 -13.14 16 13 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 14 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 15 N -0.81 -21.57 10.98 55.54 0.61 -20.96 16 16 Si 0.90 19.31 29.60 -169.99 -5.03 14.28 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 20 C -0.19 -4.69 9.74 -39.27 -0.38 -5.07 16 21 C -0.16 -3.56 9.82 -39.77 -0.39 -3.95 16 22 C 0.02 0.24 6.21 -2.18 -0.01 0.22 16 23 H 0.03 0.28 7.98 -51.93 -0.41 -0.14 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.44 7.97 -51.93 -0.41 0.02 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.82 7.67 -51.93 -0.40 0.43 16 30 H 0.38 5.90 8.36 -40.82 -0.34 5.56 16 31 H 0.09 1.93 6.16 -52.49 -0.32 1.61 16 32 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 33 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 34 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.05 0.74 7.82 -51.93 -0.41 0.34 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 300.11 15.07 4.52 4.52 Total: -1.00 -28.09 300.11 -9.86 -37.95 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.46 Total: 8.90 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.89 Total: -23.46 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -1.00 Total: -42.20 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.09 -9.86 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061986483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.050 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds