Wall clock time and date at job start Mon Mar 30 2020 04:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48562 * 111.00440 * 2 1 4 4 C 1.54378 * 104.59645 * 200.95608 * 3 2 1 5 5 C 1.54266 * 105.05866 * 23.85333 * 4 3 2 6 6 H 1.08997 * 110.32000 * 240.99580 * 5 4 3 7 7 N 1.46500 * 110.32022 * 118.89457 * 5 4 3 8 8 C 1.38866 * 119.99564 * 154.99900 * 7 5 4 9 9 C 1.39565 * 119.83941 * 359.72565 * 8 7 5 10 10 C 1.36343 * 120.15629 * 179.72150 * 9 8 7 11 11 C 1.40891 * 119.83656 * 0.55015 * 10 9 8 12 12 C 1.41133 * 120.15624 * 179.70285 * 11 10 9 13 13 H 1.07997 * 120.00248 * 155.10803 * 12 11 10 14 14 C 1.39861 * 120.00067 * 335.10740 * 12 11 10 15 15 N 1.30905 * 120.00042 * 342.13153 * 14 12 11 16 16 Si 1.86801 * 120.00156 * 162.12818 * 14 12 11 17 17 H 1.48499 * 109.46813 * 94.65571 * 16 14 12 18 18 H 1.48506 * 109.47259 * 214.65394 * 16 14 12 19 19 H 1.48493 * 109.47064 * 334.65616 * 16 14 12 20 20 C 1.40885 * 119.68777 * 359.71990 * 11 10 9 21 21 C 1.36336 * 119.83934 * 0.02562 * 20 11 10 22 22 C 1.48561 * 111.00267 * 244.57543 * 2 1 3 23 23 H 1.09007 * 109.47004 * 59.87898 * 1 2 3 24 24 H 1.09004 * 109.47439 * 179.86979 * 1 2 3 25 25 H 1.09000 * 109.47148 * 299.87644 * 1 2 3 26 26 H 1.08998 * 110.40958 * 82.17397 * 3 2 1 27 27 H 1.09003 * 110.50620 * 319.78969 * 3 2 1 28 28 H 1.08993 * 110.32264 * 264.95619 * 4 3 2 29 29 H 1.09003 * 110.40863 * 142.78843 * 4 3 2 30 30 H 0.96994 * 120.00573 * 334.71934 * 7 5 4 31 31 H 1.07994 * 119.92289 * 359.97438 * 9 8 7 32 32 H 1.07999 * 120.08251 * 180.27306 * 10 9 8 33 33 H 0.97005 * 119.99884 * 179.97438 * 15 14 12 34 34 H 1.07995 * 120.08311 * 179.97438 * 20 11 10 35 35 H 1.08001 * 119.92226 * 179.97438 * 21 20 11 36 36 H 1.09007 * 110.40926 * 40.27076 * 22 2 1 37 37 H 1.08994 * 110.41533 * 277.82074 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5343 5 6 3.4433 -0.0541 -1.3584 6 1 4.1496 -0.7687 -0.9361 7 7 3.7799 0.2274 -2.7562 8 6 4.3394 -0.7659 -3.5491 9 6 4.5849 -2.0293 -3.0093 10 6 5.1288 -3.0110 -3.7835 11 6 5.4538 -2.7440 -5.1282 12 6 6.0229 -3.7534 -5.9339 13 1 5.9082 -3.7164 -7.0072 14 6 6.7354 -4.8016 -5.3426 15 7 7.1771 -4.6827 -4.1160 16 14 7.0565 -6.3713 -6.3029 17 1 8.3906 -6.2913 -6.9502 18 1 7.0240 -7.5329 -5.3781 19 1 6.0105 -6.5377 -7.3436 20 6 5.2084 -1.4646 -5.6646 21 6 4.6592 -0.4941 -4.8802 22 6 2.0014 -0.5954 -1.2526 23 1 -0.3633 0.5157 -0.8890 24 1 -0.3634 -1.0277 -0.0023 25 1 -0.3633 0.5119 0.8911 26 1 2.0078 1.7916 1.0120 27 1 1.4104 2.0229 -0.6591 28 1 4.1482 1.1747 0.2935 29 1 3.6955 2.0992 -1.1695 30 1 3.6082 1.1062 -3.1289 31 1 4.3397 -2.2311 -1.9771 32 1 5.3142 -3.9896 -3.3658 33 1 7.6710 -5.4098 -3.7058 34 1 5.4554 -1.2529 -6.6944 35 1 4.4709 0.4873 -5.2899 36 1 1.4099 -0.2713 -2.1089 37 1 2.0079 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061986483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:20 Heat of formation + Delta-G solvation = 13.536696 kcal Electronic energy + Delta-G solvation = -17362.276212 eV Core-core repulsion = 14717.183339 eV Total energy + Delta-G solvation = -2645.092873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44576 -39.20086 -36.37604 -34.73275 -32.28643 -31.37338 -30.31027 -29.03973 -26.71384 -25.61557 -23.26886 -22.38281 -22.03673 -20.97044 -19.15451 -18.13247 -17.08048 -16.78796 -16.50437 -15.79876 -15.38052 -15.30342 -14.77180 -14.46195 -14.24755 -13.87457 -13.80353 -13.48436 -13.44860 -12.85072 -12.73125 -12.59423 -12.43244 -12.30549 -12.22501 -12.06621 -11.77816 -11.58012 -11.14892 -11.01895 -10.32655 -9.51592 -9.40042 -8.54862 -8.16833 -6.00918 1.10902 1.18917 1.40358 1.52899 1.59315 2.27745 2.72284 2.84518 3.29617 3.68655 3.72921 3.89160 4.09637 4.32092 4.39646 4.46513 4.51013 4.55601 4.58817 4.73476 4.83904 4.96496 5.00180 5.01761 5.08627 5.14063 5.20690 5.28759 5.45751 5.65171 5.78460 5.84880 5.96822 6.03094 6.19451 6.39703 6.67351 6.87460 7.08793 7.14927 7.31698 8.48636 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039866 B = 0.004666 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.190061 B = 5998.962248 C = 6279.061284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.529 5.529 3 C 0.036 3.964 4 C -0.124 4.124 5 C 0.153 3.847 6 H 0.066 0.934 7 N -0.741 5.741 8 C 0.111 3.889 9 C -0.172 4.172 10 C -0.144 4.144 11 C 0.036 3.964 12 C -0.507 4.507 13 H 0.068 0.932 14 C 0.033 3.967 15 N -0.842 5.842 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.268 1.268 19 H -0.261 1.261 20 C -0.197 4.197 21 C -0.164 4.164 22 C 0.023 3.977 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.397 0.603 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.282 0.718 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.043 0.957 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 9.428 7.503 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.253 5.253 3 C -0.092 4.092 4 C -0.163 4.163 5 C 0.046 3.954 6 H 0.084 0.916 7 N -0.376 5.376 8 C 0.012 3.988 9 C -0.194 4.194 10 C -0.164 4.164 11 C 0.033 3.967 12 C -0.539 4.539 13 H 0.086 0.914 14 C -0.179 4.179 15 N -0.470 5.470 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.217 4.217 21 C -0.186 4.186 22 C -0.107 4.107 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.232 0.768 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.061 0.939 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.927 8.920 8.321 15.116 hybrid contribution 0.007 -0.271 -1.330 1.357 sum -8.920 8.649 6.991 14.257 Atomic orbital electron populations 1.22546 0.86969 1.02479 1.01478 1.65351 1.09360 1.16227 1.34353 1.23161 0.94431 0.89529 1.02079 1.22576 0.97485 0.96454 0.99739 1.21390 0.94261 0.97531 0.82205 0.91608 1.44022 1.71554 1.12453 1.09538 1.17443 1.01006 0.89528 0.90795 1.20253 1.06909 0.93495 0.98718 1.20858 1.01764 0.98419 0.95377 1.17817 0.93144 0.92505 0.93200 1.19601 1.31845 1.07823 0.94587 0.91406 1.26604 0.93044 1.02326 0.95939 1.69924 1.28387 1.33179 1.15523 0.85305 0.79227 0.76951 0.78840 1.18973 1.19306 1.18509 1.20754 1.08066 0.93509 0.99344 1.20103 1.06420 0.99127 0.92964 1.23581 0.96317 0.99782 0.91034 0.95241 0.91477 0.89634 0.88468 0.93092 0.89724 0.89530 0.76806 0.87928 0.88491 0.90764 0.88509 0.86360 0.93904 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.53 127.69 1.22 1.48 16 2 N -0.53 -12.31 5.66 -907.62 -5.14 -17.44 16 3 C 0.04 0.67 6.49 86.45 0.56 1.23 16 4 C -0.12 -2.61 6.76 31.49 0.21 -2.40 16 5 C 0.15 4.40 3.10 45.89 0.14 4.54 16 6 H 0.07 2.18 6.37 -2.39 -0.02 2.17 16 7 N -0.74 -23.89 5.21 -314.30 -1.64 -25.52 16 8 C 0.11 4.71 6.67 38.67 0.26 4.97 16 9 C -0.17 -8.15 9.14 22.15 0.20 -7.94 16 10 C -0.14 -7.89 8.63 22.48 0.19 -7.69 16 11 C 0.04 2.04 5.57 -21.27 -0.12 1.92 16 12 C -0.51 -28.85 9.03 23.37 0.21 -28.64 16 13 H 0.07 3.74 7.91 -2.91 -0.02 3.71 16 14 C 0.03 1.75 5.13 85.22 0.44 2.18 16 15 N -0.84 -46.57 10.98 21.81 0.24 -46.33 16 16 Si 0.98 40.49 29.60 68.60 2.03 42.52 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 18 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 C -0.20 -9.90 9.74 22.47 0.22 -9.68 16 21 C -0.16 -7.17 9.82 22.15 0.22 -6.95 16 22 C 0.02 0.64 6.21 86.45 0.54 1.17 16 23 H 0.03 0.54 7.98 -2.38 -0.02 0.52 16 24 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 0.88 7.97 -2.39 -0.02 0.86 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 1.61 7.67 -2.39 -0.02 1.60 16 30 H 0.40 10.88 8.36 -92.71 -0.78 10.11 16 31 H 0.10 4.50 6.16 -2.91 -0.02 4.48 16 32 H 0.10 5.61 6.18 -2.91 -0.02 5.59 16 33 H 0.28 14.19 8.30 -92.70 -0.77 13.42 16 34 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.04 1.24 7.82 -2.38 -0.02 1.22 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -62.11 300.11 0.07 -62.04 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.28 Total: 30.55 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 4.29 Total: -45.81 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -6.53 Total: -89.30 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -62.11 0.07 -62.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061986483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.574 kcal (2) G-P(sol) polarization free energy of solvation -62.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds