Wall clock time and date at job start Mon Mar 30 2020 04:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48531 * 110.99747 * 2 1 4 4 C 1.55105 * 103.28507 * 200.33604 * 3 2 1 5 5 C 1.54592 * 102.84485 * 37.30599 * 4 3 2 6 6 H 1.08990 * 110.31075 * 97.12012 * 5 4 3 7 7 N 1.46503 * 110.30728 * 219.18734 * 5 4 3 8 8 C 1.38858 * 120.00118 * 203.33658 * 7 5 4 9 9 C 1.39570 * 119.83698 * 0.02562 * 8 7 5 10 10 C 1.36341 * 120.15562 * 179.72158 * 9 8 7 11 11 C 1.40884 * 119.83519 * 0.54915 * 10 9 8 12 12 C 1.41138 * 120.15598 * 179.70099 * 11 10 9 13 13 H 1.08000 * 120.00379 * 204.62621 * 12 11 10 14 14 C 1.39871 * 119.99861 * 24.62725 * 12 11 10 15 15 N 1.30899 * 119.99721 * 17.96591 * 14 12 11 16 16 Si 1.86798 * 119.99792 * 197.96615 * 14 12 11 17 17 H 1.48499 * 109.47333 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47297 * 120.00351 * 16 14 12 19 19 H 1.48503 * 109.46919 * 239.99704 * 16 14 12 20 20 C 1.40883 * 119.69248 * 359.72522 * 11 10 9 21 21 C 1.36339 * 119.83698 * 0.02562 * 20 11 10 22 22 C 1.47900 * 110.99934 * 242.60828 * 2 1 3 23 23 H 1.09005 * 109.46539 * 177.39805 * 1 2 3 24 24 H 1.08997 * 109.46921 * 297.39361 * 1 2 3 25 25 H 1.08997 * 109.47222 * 57.39489 * 1 2 3 26 26 H 1.09003 * 110.66791 * 318.71615 * 3 2 1 27 27 H 1.09005 * 110.66897 * 81.67553 * 3 2 1 28 28 H 1.08998 * 110.70741 * 278.99602 * 4 3 2 29 29 H 1.09001 * 110.81464 * 155.66576 * 4 3 2 30 30 H 0.97002 * 120.00062 * 23.61085 * 7 5 4 31 31 H 1.07999 * 119.92343 * 359.97438 * 9 8 7 32 32 H 1.07999 * 120.08392 * 180.27646 * 10 9 8 33 33 H 0.97003 * 120.00038 * 180.02562 * 15 14 12 34 34 H 1.08004 * 120.08450 * 180.02562 * 20 11 10 35 35 H 1.08000 * 119.92361 * 179.97438 * 21 20 11 36 36 H 1.08998 * 109.91800 * 26.48401 * 22 2 1 37 37 H 1.09003 * 110.07763 * 265.28449 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4504 1.2122 -0.5246 5 6 3.2982 0.1055 -1.5931 6 1 3.2142 0.5472 -2.5860 7 7 4.4390 -0.8122 -1.5407 8 6 4.7785 -1.5625 -2.6587 9 6 4.0309 -1.4393 -3.8309 10 6 4.3620 -2.1686 -4.9342 11 6 5.4546 -3.0567 -4.8854 12 6 5.7994 -3.8197 -6.0217 13 1 6.3360 -4.7497 -5.9052 14 6 5.4461 -3.3714 -7.2986 15 7 5.1228 -2.1167 -7.4855 16 14 5.4356 -4.5630 -8.7371 17 1 5.8372 -5.9124 -8.2650 18 1 4.0700 -4.6270 -9.3170 19 1 6.3919 -4.0966 -9.7731 20 6 6.2011 -3.1802 -3.6970 21 6 5.8617 -2.4408 -2.6029 22 6 1.9990 -0.6353 -1.2260 23 1 -0.3632 -1.0267 -0.0467 24 1 -0.3633 0.4728 0.9124 25 1 -0.3633 0.5537 -0.8657 26 1 1.4236 2.0205 -0.6729 27 1 2.0013 1.7988 1.0091 28 1 4.1137 0.8863 0.2766 29 1 3.8131 2.1362 -0.9751 30 1 4.9548 -0.8987 -0.7237 31 1 3.1907 -0.7616 -3.8653 32 1 3.7855 -2.0690 -5.8420 33 1 4.8774 -1.8058 -8.3710 34 1 7.0401 -3.8588 -3.6527 35 1 6.4328 -2.5346 -1.6911 36 1 1.2758 -0.5402 -2.0359 37 1 2.2117 -1.6880 -1.0399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061986491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:22 Heat of formation + Delta-G solvation = 31.014645 kcal Electronic energy + Delta-G solvation = -17368.788667 eV Core-core repulsion = 14724.453694 eV Total energy + Delta-G solvation = -2644.334973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.17830 -37.54952 -34.75791 -33.01482 -31.00502 -29.48722 -28.80508 -27.61250 -25.43424 -24.03197 -21.70808 -21.02331 -20.55069 -19.48528 -17.20450 -16.45342 -15.96528 -15.47479 -14.93291 -14.55256 -14.07817 -13.79140 -13.21781 -12.86920 -12.69563 -12.51107 -12.08891 -11.93044 -11.78401 -11.62326 -11.43409 -11.30298 -11.05519 -10.99851 -10.72457 -10.63506 -10.43771 -9.68283 -9.27841 -9.20103 -8.54785 -8.43845 -7.47990 -6.63411 -6.37414 -4.02113 2.91072 3.11403 3.16102 3.21628 3.35638 4.02684 4.06500 4.30172 4.71968 4.74326 4.86559 5.15719 5.30374 5.34590 5.44957 5.56769 5.66999 5.76609 5.83520 5.90274 5.93505 6.11582 6.27252 6.33518 6.34636 6.86002 6.94589 6.97325 7.00199 7.21652 7.37076 7.58102 7.70700 7.85890 8.16722 8.31217 8.51512 8.72578 8.82266 9.07431 9.16732 10.38299 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038515 B = 0.004716 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.810739 B = 5935.483498 C = 6253.703254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.523 5.523 3 C 0.034 3.966 4 C -0.129 4.129 5 C 0.156 3.844 6 H 0.079 0.921 7 N -0.749 5.749 8 C 0.091 3.909 9 C -0.164 4.164 10 C -0.124 4.124 11 C 0.074 3.926 12 C -0.467 4.467 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.808 5.808 16 Si 0.901 3.099 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.277 1.277 20 C -0.186 4.186 21 C -0.158 4.158 22 C 0.018 3.982 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.026 0.974 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.385 0.615 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.275 0.725 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 5.900 9.725 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.247 5.247 3 C -0.094 4.094 4 C -0.168 4.168 5 C 0.048 3.952 6 H 0.097 0.903 7 N -0.384 5.384 8 C -0.005 4.005 9 C -0.186 4.186 10 C -0.144 4.144 11 C 0.071 3.929 12 C -0.498 4.498 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.436 5.436 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.207 4.207 21 C -0.180 4.180 22 C -0.112 4.112 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.219 0.781 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.432 5.844 9.891 13.167 hybrid contribution -0.208 -0.044 -1.209 1.227 sum -6.640 5.800 8.683 12.374 Atomic orbital electron populations 1.22507 0.88309 1.01988 1.00481 1.64742 1.07748 1.14520 1.37670 1.23241 0.95082 0.90267 1.00800 1.22789 0.96435 0.98832 0.98716 1.21390 0.86195 0.89209 0.98439 0.90308 1.43949 1.33818 1.47580 1.13028 1.17365 0.98230 0.97387 0.87557 1.20092 1.01185 1.03878 0.93443 1.20929 0.97785 0.98953 0.96776 1.17497 0.90695 0.92631 0.92061 1.19406 1.33290 1.06781 0.90323 0.90911 1.25790 0.93092 0.94902 1.00233 1.69866 1.35378 1.14421 1.23919 0.86378 0.78456 0.81717 0.80784 1.18613 1.19983 1.20284 1.20548 1.01256 1.04090 0.94768 1.19809 0.98896 1.01109 0.98185 1.23616 0.96697 1.00811 0.90078 0.91390 0.91598 0.95514 0.93805 0.90198 0.90405 0.90687 0.78133 0.89559 0.86455 0.91418 0.89064 0.89562 0.93884 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.07 0.56 0.74 16 2 N -0.52 -6.73 5.55 -238.60 -1.33 -8.05 16 3 C 0.03 0.38 6.56 -1.81 -0.01 0.37 16 4 C -0.13 -1.55 6.78 -24.78 -0.17 -1.72 16 5 C 0.16 2.36 2.96 -66.57 -0.20 2.17 16 6 H 0.08 1.30 6.47 -51.93 -0.34 0.96 16 7 N -0.75 -13.10 5.16 -50.73 -0.26 -13.36 16 8 C 0.09 1.99 6.67 -83.69 -0.56 1.43 16 9 C -0.16 -3.84 9.14 -39.77 -0.36 -4.20 16 10 C -0.12 -3.28 8.64 -39.26 -0.34 -3.62 16 11 C 0.07 2.02 5.57 -106.79 -0.60 1.42 16 12 C -0.47 -12.78 9.03 -37.87 -0.34 -13.13 16 13 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 14 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 15 N -0.81 -21.59 10.96 55.54 0.61 -20.98 16 16 Si 0.90 19.33 29.60 -169.99 -5.03 14.30 16 17 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 C -0.19 -4.66 9.74 -39.27 -0.38 -5.04 16 21 C -0.16 -3.57 9.82 -39.77 -0.39 -3.96 16 22 C 0.02 0.26 6.50 -2.76 -0.02 0.24 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.03 0.27 8.00 -51.93 -0.42 -0.14 16 26 H 0.04 0.46 7.96 -51.93 -0.41 0.04 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.92 7.75 -51.93 -0.40 0.51 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.39 6.13 8.36 -40.82 -0.34 5.79 16 31 H 0.09 1.85 6.21 -52.49 -0.33 1.52 16 32 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 33 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 34 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 35 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.04 0.63 7.73 -51.93 -0.40 0.23 16 37 H 0.09 1.47 7.92 -51.93 -0.41 1.06 16 LS Contribution 300.00 15.07 4.52 4.52 Total: -1.00 -28.17 300.00 -9.84 -38.01 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.46 Total: 9.01 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.89 Total: -23.45 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.98 Total: -42.39 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.17 -9.84 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061986491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.024 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds