Wall clock time and date at job start Mon Mar 30 2020 04:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48531 * 110.99747 * 2 1 4 4 C 1.55105 * 103.28507 * 200.33604 * 3 2 1 5 5 C 1.54592 * 102.84485 * 37.30599 * 4 3 2 6 6 H 1.08990 * 110.31075 * 97.12012 * 5 4 3 7 7 N 1.46503 * 110.30728 * 219.18734 * 5 4 3 8 8 C 1.38858 * 120.00118 * 203.33658 * 7 5 4 9 9 C 1.39570 * 119.83698 * 0.02562 * 8 7 5 10 10 C 1.36341 * 120.15562 * 179.72158 * 9 8 7 11 11 C 1.40884 * 119.83519 * 0.54915 * 10 9 8 12 12 C 1.41138 * 120.15598 * 179.70099 * 11 10 9 13 13 H 1.08000 * 120.00379 * 204.62621 * 12 11 10 14 14 C 1.39871 * 119.99861 * 24.62725 * 12 11 10 15 15 N 1.30899 * 119.99721 * 17.96591 * 14 12 11 16 16 Si 1.86798 * 119.99792 * 197.96615 * 14 12 11 17 17 H 1.48499 * 109.47333 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47297 * 120.00351 * 16 14 12 19 19 H 1.48503 * 109.46919 * 239.99704 * 16 14 12 20 20 C 1.40883 * 119.69248 * 359.72522 * 11 10 9 21 21 C 1.36339 * 119.83698 * 0.02562 * 20 11 10 22 22 C 1.47900 * 110.99934 * 242.60828 * 2 1 3 23 23 H 1.09005 * 109.46539 * 177.39805 * 1 2 3 24 24 H 1.08997 * 109.46921 * 297.39361 * 1 2 3 25 25 H 1.08997 * 109.47222 * 57.39489 * 1 2 3 26 26 H 1.09003 * 110.66791 * 318.71615 * 3 2 1 27 27 H 1.09005 * 110.66897 * 81.67553 * 3 2 1 28 28 H 1.08998 * 110.70741 * 278.99602 * 4 3 2 29 29 H 1.09001 * 110.81464 * 155.66576 * 4 3 2 30 30 H 0.97002 * 120.00062 * 23.61085 * 7 5 4 31 31 H 1.07999 * 119.92343 * 359.97438 * 9 8 7 32 32 H 1.07999 * 120.08392 * 180.27646 * 10 9 8 33 33 H 0.97003 * 120.00038 * 180.02562 * 15 14 12 34 34 H 1.08004 * 120.08450 * 180.02562 * 20 11 10 35 35 H 1.08000 * 119.92361 * 179.97438 * 21 20 11 36 36 H 1.08998 * 109.91800 * 26.48401 * 22 2 1 37 37 H 1.09003 * 110.07763 * 265.28449 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4504 1.2122 -0.5246 5 6 3.2982 0.1055 -1.5931 6 1 3.2142 0.5472 -2.5860 7 7 4.4390 -0.8122 -1.5407 8 6 4.7785 -1.5625 -2.6587 9 6 4.0309 -1.4393 -3.8309 10 6 4.3620 -2.1686 -4.9342 11 6 5.4546 -3.0567 -4.8854 12 6 5.7994 -3.8197 -6.0217 13 1 6.3360 -4.7497 -5.9052 14 6 5.4461 -3.3714 -7.2986 15 7 5.1228 -2.1167 -7.4855 16 14 5.4356 -4.5630 -8.7371 17 1 5.8372 -5.9124 -8.2650 18 1 4.0700 -4.6270 -9.3170 19 1 6.3919 -4.0966 -9.7731 20 6 6.2011 -3.1802 -3.6970 21 6 5.8617 -2.4408 -2.6029 22 6 1.9990 -0.6353 -1.2260 23 1 -0.3632 -1.0267 -0.0467 24 1 -0.3633 0.4728 0.9124 25 1 -0.3633 0.5537 -0.8657 26 1 1.4236 2.0205 -0.6729 27 1 2.0013 1.7988 1.0091 28 1 4.1137 0.8863 0.2766 29 1 3.8131 2.1362 -0.9751 30 1 4.9548 -0.8987 -0.7237 31 1 3.1907 -0.7616 -3.8653 32 1 3.7855 -2.0690 -5.8420 33 1 4.8774 -1.8058 -8.3710 34 1 7.0401 -3.8588 -3.6527 35 1 6.4328 -2.5346 -1.6911 36 1 1.2758 -0.5402 -2.0359 37 1 2.2117 -1.6880 -1.0399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061986491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:22 Heat of formation + Delta-G solvation = 13.464471 kcal Electronic energy + Delta-G solvation = -17369.549699 eV Core-core repulsion = 14724.453694 eV Total energy + Delta-G solvation = -2645.096005 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44230 -39.19931 -36.37468 -34.72705 -32.27864 -31.37099 -30.33083 -28.99908 -26.69142 -25.64001 -23.30281 -22.40522 -21.96682 -20.98421 -19.15774 -17.97455 -17.22504 -16.78930 -16.63261 -15.89600 -15.46690 -15.11413 -14.63527 -14.42991 -14.25672 -13.86373 -13.78412 -13.54318 -13.18913 -12.96948 -12.75082 -12.52751 -12.51593 -12.41529 -12.21179 -12.15086 -11.74004 -11.56535 -11.15270 -11.04459 -10.31868 -9.43277 -9.39801 -8.55288 -8.16316 -6.00696 1.10093 1.18745 1.40109 1.54373 1.57940 2.27547 2.83780 2.84898 3.10272 3.70952 3.74530 3.89265 4.13642 4.30901 4.36183 4.45547 4.51308 4.54012 4.61030 4.71321 4.86377 4.91525 4.97761 5.04822 5.08171 5.13965 5.21469 5.29791 5.45678 5.70248 5.79218 5.87596 5.97114 6.05631 6.19239 6.39910 6.67963 6.88058 7.08748 7.15340 7.32570 8.48361 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038515 B = 0.004716 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.810739 B = 5935.483498 C = 6253.703254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.533 5.533 3 C 0.037 3.963 4 C -0.121 4.121 5 C 0.148 3.852 6 H 0.066 0.934 7 N -0.739 5.739 8 C 0.113 3.887 9 C -0.173 4.173 10 C -0.144 4.144 11 C 0.035 3.965 12 C -0.506 4.506 13 H 0.067 0.933 14 C 0.032 3.968 15 N -0.842 5.842 16 Si 0.976 3.024 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.268 1.268 20 C -0.195 4.195 21 C -0.165 4.165 22 C 0.025 3.975 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.397 0.603 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.282 0.718 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.039 0.961 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 6.864 11.214 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.257 5.257 3 C -0.090 4.090 4 C -0.159 4.159 5 C 0.041 3.959 6 H 0.084 0.916 7 N -0.373 5.373 8 C 0.014 3.986 9 C -0.195 4.195 10 C -0.164 4.164 11 C 0.032 3.968 12 C -0.538 4.538 13 H 0.085 0.915 14 C -0.179 4.179 15 N -0.471 5.471 16 Si 0.797 3.203 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.193 1.193 20 C -0.215 4.215 21 C -0.187 4.187 22 C -0.105 4.105 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.232 0.768 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.057 0.943 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.928 6.837 11.432 15.015 hybrid contribution -0.101 -0.238 -1.467 1.489 sum -7.028 6.599 9.966 13.866 Atomic orbital electron populations 1.22567 0.86990 1.02185 1.01648 1.64737 1.09105 1.15708 1.36168 1.23319 0.94160 0.89359 1.02205 1.22770 0.97493 0.97934 0.97707 1.21565 0.85476 0.89744 0.99129 0.91645 1.43987 1.34371 1.46844 1.12067 1.17455 0.96778 0.96270 0.88115 1.20221 1.02010 1.03885 0.93367 1.20854 0.98104 1.00280 0.97149 1.17818 0.91851 0.93938 0.93191 1.19626 1.35267 1.07199 0.91659 0.91455 1.26600 0.92262 0.96477 1.02582 1.69925 1.36213 1.15987 1.24954 0.85262 0.78800 0.79110 0.77096 1.18434 1.19152 1.19311 1.20759 1.01278 1.04539 0.94974 1.20107 0.99358 1.00565 0.98680 1.23394 0.96508 0.99629 0.91012 0.91727 0.89627 0.95149 0.92953 0.88115 0.89734 0.89325 0.76764 0.88017 0.88423 0.90788 0.88527 0.86419 0.94308 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.40 127.69 1.20 1.48 16 2 N -0.53 -12.37 5.55 -908.79 -5.05 -17.42 16 3 C 0.04 0.69 6.56 86.71 0.57 1.26 16 4 C -0.12 -2.51 6.78 31.86 0.22 -2.29 16 5 C 0.15 4.21 2.96 45.87 0.14 4.35 16 6 H 0.07 2.06 6.47 -2.39 -0.02 2.05 16 7 N -0.74 -24.34 5.16 -314.40 -1.62 -25.96 16 8 C 0.11 4.82 6.67 38.67 0.26 5.07 16 9 C -0.17 -8.16 9.14 22.15 0.20 -7.96 16 10 C -0.14 -7.85 8.64 22.48 0.19 -7.66 16 11 C 0.03 1.96 5.57 -21.27 -0.12 1.85 16 12 C -0.51 -28.82 9.03 23.38 0.21 -28.61 16 13 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 14 C 0.03 1.73 5.13 85.23 0.44 2.17 16 15 N -0.84 -46.44 10.96 21.82 0.24 -46.20 16 16 Si 0.98 40.49 29.60 68.60 2.03 42.52 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 C -0.20 -9.89 9.74 22.47 0.22 -9.68 16 21 C -0.16 -7.29 9.82 22.15 0.22 -7.07 16 22 C 0.02 0.69 6.50 86.45 0.56 1.25 16 23 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.03 0.56 8.00 -2.39 -0.02 0.54 16 26 H 0.05 0.91 7.96 -2.39 -0.02 0.89 16 27 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.08 1.68 7.75 -2.39 -0.02 1.66 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.40 11.49 8.36 -92.71 -0.78 10.72 16 31 H 0.10 4.38 6.21 -2.91 -0.02 4.36 16 32 H 0.10 5.62 6.16 -2.91 -0.02 5.61 16 33 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 34 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.04 1.11 7.73 -2.39 -0.02 1.09 16 37 H 0.06 2.11 7.92 -2.39 -0.02 2.09 16 Total: -1.00 -62.18 300.00 0.19 -61.99 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.28 Total: 30.91 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 4.30 Total: -45.83 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -6.43 Total: -89.59 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -62.18 0.19 -61.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061986491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.455 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds