Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86794 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47282 * 299.99941 * 3 2 1 6 6 H 1.48498 * 109.47252 * 60.00117 * 3 2 1 7 7 C 1.37881 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99581 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47013 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47257 * 174.17750 * 10 9 7 12 12 C 1.46961 * 110.99810 * 54.64637 * 11 10 9 13 13 C 1.51617 * 111.00894 * 210.07120 * 12 11 10 14 14 N 1.45688 * 114.06143 * 292.68859 * 13 12 11 15 15 C 1.47005 * 112.37589 * 67.83414 * 14 13 12 16 16 C 1.51459 * 108.37086 * 275.97599 * 15 14 13 17 17 C 1.38111 * 119.88913 * 249.11724 * 16 15 14 18 18 C 1.38381 * 119.67711 * 180.42684 * 17 16 15 19 19 C 1.38305 * 120.18966 * 359.97438 * 18 17 16 20 20 C 1.38165 * 120.17663 * 359.92544 * 19 18 17 21 21 C 1.37987 * 119.78126 * 69.36128 * 16 15 14 22 22 H 0.96998 * 119.99914 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47207 * 60.00187 * 9 7 2 24 24 H 1.08998 * 109.46903 * 299.99964 * 9 7 2 25 25 H 1.09001 * 109.47432 * 54.17301 * 10 9 7 26 26 H 1.09005 * 109.46804 * 294.17816 * 10 9 7 27 27 H 1.08999 * 109.17348 * 89.67735 * 12 11 10 28 28 H 1.09007 * 109.13448 * 330.43460 * 12 11 10 29 29 H 1.09004 * 108.57093 * 171.50032 * 13 12 11 30 30 H 1.09006 * 108.45129 * 53.78291 * 13 12 11 31 31 H 1.00906 * 110.99905 * 302.86740 * 14 13 12 32 32 H 1.09000 * 109.68282 * 156.25637 * 15 14 13 33 33 H 1.08992 * 109.71348 * 35.70886 * 15 14 13 34 34 H 1.08004 * 120.16259 * 0.39621 * 17 16 15 35 35 H 1.07995 * 119.90403 * 179.97438 * 18 17 16 36 36 H 1.07993 * 119.91501 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.21578 * 180.28282 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5163 -4.9297 0.1400 12 6 0.4822 -5.0600 -0.8961 13 6 -0.6891 -5.8818 -0.3945 14 7 -0.3726 -7.2838 -0.1567 15 6 0.5496 -7.4653 0.9737 16 6 1.9654 -7.2762 0.4699 17 6 2.8231 -8.3567 0.4055 18 6 4.1184 -8.1773 -0.0472 19 6 4.5524 -6.9223 -0.4339 20 6 3.6944 -5.8411 -0.3718 21 6 2.3931 -6.0229 0.0820 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.9387 -3.5474 0.8327 26 1 2.8014 -3.6647 -0.9381 27 1 0.9120 -5.5466 -1.7716 28 1 0.1293 -4.0673 -1.1756 29 1 -1.4917 -5.8271 -1.1301 30 1 -1.0441 -5.4431 0.5381 31 1 -0.0110 -7.7196 -0.9919 32 1 0.4364 -8.4695 1.3823 33 1 0.3334 -6.7279 1.7466 34 1 2.4847 -9.3369 0.7074 35 1 4.7923 -9.0196 -0.0987 36 1 5.5643 -6.7872 -0.7861 37 1 4.0313 -4.8617 -0.6779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062818840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = 16.362969 kcal Electronic energy + Delta-G solvation = -17922.499185 eV Core-core repulsion = 15277.528868 eV Total energy + Delta-G solvation = -2644.970317 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.56943 -38.16261 -37.04883 -35.12065 -32.58433 -32.00861 -31.00134 -28.35855 -26.39291 -26.18403 -23.68102 -23.02895 -21.67272 -21.06132 -18.95195 -18.06843 -17.28096 -16.55031 -16.34040 -16.27978 -15.68466 -15.49027 -15.28000 -14.89388 -14.40529 -14.24207 -14.16438 -13.44050 -13.26172 -13.01613 -12.93645 -12.65873 -12.49679 -12.28255 -12.11897 -11.90128 -11.82121 -11.47783 -11.29267 -10.60097 -10.35783 -9.92618 -9.33563 -8.89652 -8.25191 -6.36547 0.41662 0.43584 1.37808 1.38357 1.51360 2.36158 2.69150 2.93793 3.08503 3.44056 3.87390 3.92656 4.01026 4.12478 4.16770 4.20562 4.36851 4.45312 4.55612 4.59090 4.67871 4.75002 4.82069 4.90867 4.98122 5.08542 5.14598 5.33910 5.39274 5.51501 5.59799 5.62524 5.72764 5.90003 6.01319 6.02412 6.21466 6.41056 6.46313 6.78403 7.32729 8.87029 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029489 B = 0.005898 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.288444 B = 4746.166440 C = 5524.779659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.035 3.965 10 C 0.079 3.921 11 N -0.498 5.498 12 C 0.019 3.981 13 C 0.069 3.931 14 N -0.671 5.671 15 C 0.110 3.890 16 C -0.146 4.146 17 C -0.088 4.088 18 C -0.142 4.142 19 C -0.103 4.103 20 C -0.190 4.190 21 C 0.090 3.910 22 H 0.265 0.735 23 H 0.005 0.995 24 H -0.006 1.006 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.345 0.655 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -17.383 -1.444 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.048 4.048 11 N -0.215 5.215 12 C -0.108 4.108 13 C -0.062 4.062 14 N -0.298 5.298 15 C -0.019 4.019 16 C -0.150 4.150 17 C -0.107 4.107 18 C -0.160 4.160 19 C -0.122 4.122 20 C -0.210 4.210 21 C -0.007 4.007 22 H 0.074 0.926 23 H 0.023 0.977 24 H 0.013 0.987 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.157 0.843 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.989 -17.319 -0.594 17.783 hybrid contribution 1.492 1.894 -1.037 2.624 sum 5.481 -15.425 -1.631 16.451 Atomic orbital electron populations 1.70098 1.07713 1.27862 1.51120 1.25921 0.95758 1.03209 0.94429 0.85384 0.78975 0.78691 0.77911 1.18756 1.20138 1.20299 1.21567 0.93438 0.92107 1.51326 0.92365 1.19014 0.94038 0.91738 0.95377 1.22107 0.96197 0.87620 0.98849 1.59763 1.13538 1.01439 1.46757 1.22736 0.93972 1.02405 0.91727 1.21506 0.95413 0.87337 1.01924 1.60405 1.46699 1.13234 1.09483 1.21169 0.84636 1.02748 0.93346 1.20543 0.99351 0.92038 1.03074 1.21330 0.93112 0.98463 0.97816 1.21466 0.96601 0.97431 1.00503 1.21309 0.99725 0.92531 0.98626 1.21696 0.95386 1.00486 1.03449 1.19166 0.92465 0.91338 0.97767 0.92611 0.97729 0.98725 0.92277 0.95024 0.94250 0.90492 0.88894 0.92034 0.83635 0.87669 0.91863 0.82730 0.83071 0.84323 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.04 1.90 4.54 29.85 0.14 2.04 16 10 C 0.08 3.49 3.86 86.30 0.33 3.82 16 11 N -0.50 -19.16 4.33 -697.93 -3.02 -22.18 16 12 C 0.02 0.67 5.27 85.84 0.45 1.12 16 13 C 0.07 2.06 6.13 86.08 0.53 2.59 16 14 N -0.67 -17.04 6.75 -521.70 -3.52 -20.56 16 15 C 0.11 2.79 6.19 85.78 0.53 3.32 16 16 C -0.15 -3.98 5.15 -19.71 -0.10 -4.08 16 17 C -0.09 -1.86 9.69 22.27 0.22 -1.64 16 18 C -0.14 -2.87 10.04 22.32 0.22 -2.64 16 19 C -0.10 -2.52 10.04 22.27 0.22 -2.29 16 20 C -0.19 -5.98 8.97 22.44 0.20 -5.78 16 21 C 0.09 2.99 5.04 37.92 0.19 3.18 16 22 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 23 H 0.00 0.26 6.10 -2.39 -0.01 0.24 16 24 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 25 H 0.06 2.67 8.09 -2.39 -0.02 2.66 16 26 H 0.03 1.37 6.54 -2.38 -0.02 1.35 16 27 H 0.04 1.32 7.77 -2.39 -0.02 1.30 16 28 H 0.08 3.14 5.19 -2.38 -0.01 3.13 16 29 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.06 2.07 7.91 -2.38 -0.02 2.06 16 31 H 0.35 7.93 8.53 -89.69 -0.77 7.17 16 32 H 0.11 2.07 7.93 -2.39 -0.02 2.05 16 33 H 0.06 1.92 7.74 -2.39 -0.02 1.90 16 34 H 0.16 2.23 7.98 -2.91 -0.02 2.20 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.11 3.86 5.81 -2.91 -0.02 3.84 16 Total: -1.00 -64.78 292.73 -0.30 -65.08 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.30 Total: 17.98 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 3.63 Total: -30.69 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -6.26 Total: -98.70 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.78 -0.30 -65.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062818840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.444 kcal (2) G-P(sol) polarization free energy of solvation -64.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds