Wall clock time and date at job start Mon Mar 30 2020 04:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47241 * 2 1 4 4 C 1.50703 * 109.47284 * 120.00160 * 2 1 3 5 5 H 1.07998 * 120.00396 * 120.00175 * 4 2 1 6 6 C 1.37882 * 119.99851 * 299.99903 * 4 2 1 7 7 N 1.31519 * 119.99672 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00004 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47367 * 60.00140 * 8 6 4 10 10 H 1.48505 * 109.46967 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47152 * 299.99959 * 8 6 4 12 12 N 1.46901 * 109.47370 * 240.00244 * 2 1 3 13 13 C 1.46970 * 110.99846 * 55.66258 * 12 2 1 14 14 C 1.51621 * 111.01448 * 210.06799 * 13 12 2 15 15 N 1.45685 * 114.06292 * 292.68753 * 14 13 12 16 16 C 1.46986 * 112.36760 * 67.83686 * 15 14 13 17 17 C 1.51463 * 108.37440 * 275.96870 * 16 15 14 18 18 C 1.38103 * 119.88392 * 249.06442 * 17 16 15 19 19 C 1.38377 * 119.67695 * 180.53384 * 18 17 16 20 20 C 1.38304 * 120.18956 * 359.97438 * 19 18 17 21 21 C 1.38164 * 120.17675 * 359.89048 * 20 19 18 22 22 C 1.38000 * 119.78155 * 69.37575 * 17 16 15 23 23 H 1.09006 * 109.47531 * 291.96047 * 1 2 3 24 24 H 1.08997 * 109.47386 * 51.96071 * 1 2 3 25 25 H 1.09004 * 109.47332 * 171.96314 * 1 2 3 26 26 H 0.97005 * 119.99580 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.17418 * 330.45987 * 13 12 2 28 28 H 1.08995 * 109.16845 * 89.67466 * 13 12 2 29 29 H 1.09003 * 108.56412 * 53.87014 * 14 13 12 30 30 H 1.08997 * 108.56865 * 171.64812 * 14 13 12 31 31 H 1.00892 * 111.00297 * 192.80126 * 15 14 13 32 32 H 1.08994 * 109.67768 * 156.25686 * 16 15 14 33 33 H 1.08997 * 109.69119 * 35.69159 * 16 15 14 34 34 H 1.08003 * 120.16266 * 0.55150 * 18 17 16 35 35 H 1.08010 * 119.90526 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.91470 * 179.60939 * 20 19 18 37 37 H 1.08000 * 120.21145 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0078 10 1 1.8269 -0.4199 5.2205 11 1 1.8281 -2.5198 4.0082 12 7 2.0197 -0.6924 -1.1995 13 6 1.4655 -0.0885 -2.4194 14 6 1.3232 -1.1207 -3.5208 15 7 2.5915 -1.6276 -4.0275 16 6 3.3086 -2.4365 -3.0315 17 6 4.0911 -1.5026 -2.1318 18 6 5.4708 -1.4851 -2.1915 19 6 6.1819 -0.6381 -1.3597 20 6 5.5148 0.1875 -0.4730 21 6 4.1345 0.1727 -0.4145 22 6 3.4212 -0.6776 -1.2514 23 1 -0.3634 0.3843 0.9531 24 1 -0.3634 0.6332 -0.8093 25 1 -0.3634 -1.0176 -0.1437 26 1 0.7089 1.1614 3.4844 27 1 0.4860 0.3343 -2.1964 28 1 2.1291 0.7071 -2.7581 29 1 0.7425 -1.9597 -3.1372 30 1 0.7757 -0.6711 -4.3492 31 1 2.4585 -2.1435 -4.8842 32 1 3.9926 -3.1186 -3.5363 33 1 2.5939 -3.0056 -2.4371 34 1 5.9922 -2.1291 -2.8842 35 1 7.2609 -0.6212 -1.4037 36 1 6.0744 0.8421 0.1785 37 1 3.6130 0.8175 0.2774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062819004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:12 Heat of formation + Delta-G solvation = 48.446918 kcal Electronic energy + Delta-G solvation = -18631.910462 eV Core-core repulsion = 15988.331409 eV Total energy + Delta-G solvation = -2643.579052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.76555 -36.47231 -35.65162 -32.74327 -31.05403 -29.83739 -29.29701 -26.14147 -25.52878 -24.46799 -22.13606 -21.00812 -19.94907 -19.07887 -16.70766 -16.24824 -16.12187 -14.99138 -14.56911 -14.23393 -14.17673 -13.88700 -13.61853 -13.17787 -12.86713 -12.32982 -12.07206 -11.62826 -11.31620 -11.11648 -10.98263 -10.87611 -10.67828 -10.54539 -10.48523 -10.20960 -10.16349 -9.76297 -9.07092 -8.64051 -8.25098 -8.19660 -8.00514 -6.95226 -6.06673 -4.10329 2.11948 2.19550 3.31181 3.34689 3.39220 4.33024 4.38436 4.66512 4.93594 5.25509 5.30240 5.50206 5.55751 5.67834 5.78069 5.79318 5.86298 6.04644 6.10649 6.20352 6.38779 6.43087 6.54360 6.68248 6.78553 6.90931 6.94339 7.11535 7.16174 7.28141 7.32654 7.49768 7.56417 7.68821 7.75773 7.82640 8.22297 8.32581 8.47127 8.95694 9.53505 10.99124 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.009571 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.097196 B = 2924.859311 C = 3720.864510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.207 3.793 3 H 0.011 0.989 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.491 5.491 13 C 0.051 3.949 14 C 0.071 3.929 15 N -0.693 5.693 16 C 0.112 3.888 17 C -0.098 4.098 18 C -0.108 4.108 19 C -0.155 4.155 20 C -0.117 4.117 21 C -0.130 4.130 22 C 0.142 3.858 23 H 0.093 0.907 24 H 0.012 0.988 25 H 0.033 0.967 26 H 0.262 0.738 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.339 0.661 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -2.843 -9.989 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.102 3.898 3 H 0.028 0.972 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.208 5.208 13 C -0.075 4.075 14 C -0.059 4.059 15 N -0.325 5.325 16 C -0.016 4.016 17 C -0.101 4.101 18 C -0.128 4.128 19 C -0.174 4.174 20 C -0.136 4.136 21 C -0.151 4.151 22 C 0.044 3.956 23 H 0.111 0.889 24 H 0.030 0.970 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.680 -2.650 -9.657 10.669 hybrid contribution 0.050 -0.521 0.989 1.119 sum 3.730 -3.170 -8.668 9.955 Atomic orbital electron populations 1.21934 0.97446 0.98623 1.01593 1.19455 0.92380 0.92552 0.85395 0.97196 1.21026 1.30606 1.12410 0.89422 0.92114 1.24877 0.95171 0.95101 0.98920 1.69867 1.36760 1.22910 1.23686 0.86587 0.79313 0.79775 0.82001 1.20164 1.21330 1.20268 1.59825 1.03527 1.53739 1.03689 1.21990 1.00706 0.95287 0.89547 1.21391 0.89683 0.98029 0.96803 1.59366 1.23354 1.42949 1.06781 1.20853 0.96039 0.92581 0.92156 1.19360 0.93084 0.98908 0.98752 1.20669 0.92977 0.99646 0.99459 1.20866 0.98719 0.99165 0.98664 1.20975 0.94547 0.99459 0.98650 1.21862 0.93976 0.98832 1.00395 1.18656 0.89509 0.93258 0.94202 0.88871 0.96951 0.94749 0.92809 0.89568 0.94192 0.94973 0.91649 0.84349 0.91562 0.92882 0.87140 0.87431 0.87208 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.59 37.15 0.32 -2.93 16 2 C 0.21 5.09 1.55 -68.87 -0.11 4.98 16 3 H 0.01 0.28 6.62 -51.93 -0.34 -0.06 16 4 C -0.50 -13.34 6.51 -34.44 -0.22 -13.56 16 5 H 0.06 1.71 7.45 -52.49 -0.39 1.32 16 6 C 0.06 1.64 5.28 -17.82 -0.09 1.54 16 7 N -0.89 -24.70 11.29 55.43 0.63 -24.07 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.49 -10.69 4.11 -165.71 -0.68 -11.37 16 13 C 0.05 0.95 5.28 -4.48 -0.02 0.93 16 14 C 0.07 1.10 6.13 -5.18 -0.03 1.06 16 15 N -0.69 -10.22 6.55 -116.27 -0.76 -10.98 16 16 C 0.11 1.80 6.11 -4.55 -0.03 1.77 16 17 C -0.10 -1.85 5.41 -104.38 -0.57 -2.42 16 18 C -0.11 -1.84 9.69 -39.58 -0.38 -2.22 16 19 C -0.16 -2.64 10.04 -39.51 -0.40 -3.04 16 20 C -0.12 -2.22 10.04 -39.58 -0.40 -2.62 16 21 C -0.13 -2.85 8.07 -39.32 -0.32 -3.16 16 22 C 0.14 3.03 4.39 -83.80 -0.37 2.67 16 23 H 0.09 2.42 5.90 -51.93 -0.31 2.11 16 24 H 0.01 0.25 6.23 -51.93 -0.32 -0.08 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.09 1.57 5.29 -51.93 -0.27 1.29 16 28 H 0.04 0.77 7.77 -51.93 -0.40 0.37 16 29 H 0.03 0.52 7.91 -51.93 -0.41 0.11 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.34 3.93 8.89 -39.30 -0.35 3.58 16 32 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 33 H 0.05 0.94 7.74 -51.93 -0.40 0.53 16 34 H 0.11 1.56 7.98 -52.48 -0.42 1.14 16 35 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.14 3.46 5.29 -52.49 -0.28 3.18 16 LS Contribution 285.60 15.07 4.30 4.30 Total: -1.00 -28.37 285.60 -9.29 -37.66 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.14 Total: 5.12 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.62 Total: -17.00 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.82 Total: -46.42 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.37 -9.29 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062819004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.102 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds