Wall clock time and date at job start Mon Mar 30 2020 04:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47241 * 2 1 4 4 C 1.50703 * 109.47284 * 120.00160 * 2 1 3 5 5 H 1.07998 * 120.00396 * 120.00175 * 4 2 1 6 6 C 1.37882 * 119.99851 * 299.99903 * 4 2 1 7 7 N 1.31519 * 119.99672 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00004 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47367 * 60.00140 * 8 6 4 10 10 H 1.48505 * 109.46967 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47152 * 299.99959 * 8 6 4 12 12 N 1.46901 * 109.47370 * 240.00244 * 2 1 3 13 13 C 1.46970 * 110.99846 * 55.66258 * 12 2 1 14 14 C 1.51621 * 111.01448 * 210.06799 * 13 12 2 15 15 N 1.45685 * 114.06292 * 292.68753 * 14 13 12 16 16 C 1.46986 * 112.36760 * 67.83686 * 15 14 13 17 17 C 1.51463 * 108.37440 * 275.96870 * 16 15 14 18 18 C 1.38103 * 119.88392 * 249.06442 * 17 16 15 19 19 C 1.38377 * 119.67695 * 180.53384 * 18 17 16 20 20 C 1.38304 * 120.18956 * 359.97438 * 19 18 17 21 21 C 1.38164 * 120.17675 * 359.89048 * 20 19 18 22 22 C 1.38000 * 119.78155 * 69.37575 * 17 16 15 23 23 H 1.09006 * 109.47531 * 291.96047 * 1 2 3 24 24 H 1.08997 * 109.47386 * 51.96071 * 1 2 3 25 25 H 1.09004 * 109.47332 * 171.96314 * 1 2 3 26 26 H 0.97005 * 119.99580 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.17418 * 330.45987 * 13 12 2 28 28 H 1.08995 * 109.16845 * 89.67466 * 13 12 2 29 29 H 1.09003 * 108.56412 * 53.87014 * 14 13 12 30 30 H 1.08997 * 108.56865 * 171.64812 * 14 13 12 31 31 H 1.00892 * 111.00297 * 192.80126 * 15 14 13 32 32 H 1.08994 * 109.67768 * 156.25686 * 16 15 14 33 33 H 1.08997 * 109.69119 * 35.69159 * 16 15 14 34 34 H 1.08003 * 120.16266 * 0.55150 * 18 17 16 35 35 H 1.08010 * 119.90526 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.91470 * 179.60939 * 20 19 18 37 37 H 1.08000 * 120.21145 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0078 10 1 1.8269 -0.4199 5.2205 11 1 1.8281 -2.5198 4.0082 12 7 2.0197 -0.6924 -1.1995 13 6 1.4655 -0.0885 -2.4194 14 6 1.3232 -1.1207 -3.5208 15 7 2.5915 -1.6276 -4.0275 16 6 3.3086 -2.4365 -3.0315 17 6 4.0911 -1.5026 -2.1318 18 6 5.4708 -1.4851 -2.1915 19 6 6.1819 -0.6381 -1.3597 20 6 5.5148 0.1875 -0.4730 21 6 4.1345 0.1727 -0.4145 22 6 3.4212 -0.6776 -1.2514 23 1 -0.3634 0.3843 0.9531 24 1 -0.3634 0.6332 -0.8093 25 1 -0.3634 -1.0176 -0.1437 26 1 0.7089 1.1614 3.4844 27 1 0.4860 0.3343 -2.1964 28 1 2.1291 0.7071 -2.7581 29 1 0.7425 -1.9597 -3.1372 30 1 0.7757 -0.6711 -4.3492 31 1 2.4585 -2.1435 -4.8842 32 1 3.9926 -3.1186 -3.5363 33 1 2.5939 -3.0056 -2.4371 34 1 5.9922 -2.1291 -2.8842 35 1 7.2609 -0.6212 -1.4037 36 1 6.0744 0.8421 0.1785 37 1 3.6130 0.8175 0.2774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062819004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:12 Heat of formation + Delta-G solvation = 29.800048 kcal Electronic energy + Delta-G solvation = -18632.719051 eV Core-core repulsion = 15988.331409 eV Total energy + Delta-G solvation = -2644.387641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27831 -37.98497 -37.09097 -34.67873 -32.44539 -31.48965 -30.95702 -27.70347 -27.34678 -26.01078 -23.74372 -22.52454 -21.37191 -20.74067 -18.45105 -18.03444 -17.50857 -16.76804 -16.01090 -15.83857 -15.58588 -15.48211 -15.11220 -14.77168 -14.47288 -13.86848 -13.70044 -13.20582 -13.00578 -12.76105 -12.72069 -12.43463 -12.37940 -12.29683 -12.08743 -12.02645 -11.76755 -11.45249 -11.03904 -10.59800 -9.97961 -9.54745 -9.32035 -8.57485 -8.14391 -6.24057 0.65804 0.72216 1.37863 1.38513 1.46489 2.38287 2.94625 3.13377 3.22854 3.53291 4.03785 4.17454 4.25528 4.31070 4.40102 4.42628 4.53826 4.63934 4.76580 4.77034 4.83720 4.94442 4.96238 5.04459 5.06804 5.14793 5.33517 5.41992 5.59047 5.67168 5.76043 5.80778 5.89647 6.08385 6.15832 6.27640 6.52533 6.65884 6.74030 6.89657 7.42202 8.90138 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.009571 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.097196 B = 2924.859311 C = 3720.864510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.216 3.784 3 H -0.024 1.024 4 C -0.500 4.500 5 H 0.042 0.958 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.494 5.494 13 C 0.049 3.951 14 C 0.077 3.923 15 N -0.692 5.692 16 C 0.116 3.884 17 C -0.109 4.109 18 C -0.101 4.101 19 C -0.148 4.148 20 C -0.127 4.127 21 C -0.163 4.163 22 C 0.112 3.888 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.033 0.967 26 H 0.263 0.737 27 H 0.084 0.916 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.097 0.903 31 H 0.361 0.639 32 H 0.102 0.898 33 H 0.033 0.967 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -4.439 -11.837 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.109 3.891 3 H -0.006 1.006 4 C -0.539 4.539 5 H 0.060 0.940 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.776 3.224 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.200 1.200 12 N -0.212 5.212 13 C -0.077 4.077 14 C -0.053 4.053 15 N -0.326 5.326 16 C -0.013 4.013 17 C -0.112 4.112 18 C -0.120 4.120 19 C -0.166 4.166 20 C -0.145 4.145 21 C -0.184 4.184 22 C 0.015 3.985 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.182 0.818 32 H 0.120 0.880 33 H 0.051 0.949 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.142 -4.256 -11.536 13.328 hybrid contribution -0.314 0.010 1.494 1.526 sum 4.828 -4.246 -10.042 11.924 Atomic orbital electron populations 1.21755 0.96801 0.98834 1.01089 1.19177 0.92702 0.90742 0.86435 1.00644 1.21078 1.30275 1.11750 0.90776 0.94007 1.25533 0.95459 0.95790 1.01342 1.69974 1.37580 1.23869 1.24140 0.85722 0.78632 0.78832 0.79165 1.20177 1.20511 1.19954 1.59873 1.04420 1.53278 1.03583 1.22104 0.99899 0.96127 0.89525 1.21302 0.90375 0.97038 0.96563 1.59253 1.22795 1.43200 1.07333 1.20854 0.96138 0.92218 0.92060 1.19795 0.94397 0.98569 0.98445 1.21164 0.92255 0.99295 0.99301 1.21292 1.00637 0.97616 0.97087 1.21202 0.93446 1.00308 0.99591 1.21678 0.95503 0.99930 1.01249 1.18922 0.89292 0.94628 0.95644 0.91368 0.94646 0.94741 0.92796 0.89747 0.95578 0.95488 0.88509 0.81776 0.88007 0.94919 0.83074 0.83622 0.85925 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 8.59 71.98 0.62 -5.55 16 2 C 0.22 11.12 1.55 44.17 0.07 11.19 16 3 H -0.02 -1.37 6.62 -2.38 -0.02 -1.38 16 4 C -0.50 -28.07 6.51 25.60 0.17 -27.90 16 5 H 0.04 2.46 7.45 -2.91 -0.02 2.43 16 6 C 0.02 0.98 5.28 84.66 0.45 1.43 16 7 N -0.92 -52.50 11.29 21.45 0.24 -52.26 16 8 Si 0.95 44.78 29.54 68.60 2.03 46.80 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 12 N -0.49 -22.12 4.11 -678.20 -2.79 -24.91 16 13 C 0.05 1.85 5.28 85.84 0.45 2.30 16 14 C 0.08 2.23 6.13 86.08 0.53 2.76 16 15 N -0.69 -18.30 6.55 -521.75 -3.42 -21.72 16 16 C 0.12 3.39 6.11 85.78 0.52 3.92 16 17 C -0.11 -3.93 5.41 -19.71 -0.11 -4.04 16 18 C -0.10 -3.08 9.69 22.27 0.22 -2.86 16 19 C -0.15 -4.59 10.04 22.32 0.22 -4.37 16 20 C -0.13 -4.76 10.04 22.27 0.22 -4.54 16 21 C -0.16 -7.43 8.07 22.44 0.18 -7.25 16 22 C 0.11 4.90 4.39 37.92 0.17 5.06 16 23 H 0.07 3.67 5.90 -2.38 -0.01 3.65 16 24 H 0.03 1.50 6.23 -2.39 -0.01 1.49 16 25 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 27 H 0.08 3.10 5.29 -2.39 -0.01 3.09 16 28 H 0.03 1.02 7.77 -2.39 -0.02 1.01 16 29 H 0.03 0.82 7.91 -2.39 -0.02 0.80 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.36 6.90 8.89 -89.70 -0.80 6.10 16 32 H 0.10 2.24 7.93 -2.39 -0.02 2.22 16 33 H 0.03 1.10 7.74 -2.39 -0.02 1.08 16 34 H 0.15 3.37 7.98 -2.91 -0.02 3.35 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 37 H 0.10 5.43 5.29 -2.91 -0.02 5.42 16 Total: -1.00 -64.08 285.60 0.05 -64.03 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.27 Total: 17.88 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 3.71 Total: -29.84 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -5.96 Total: -98.88 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.08 0.05 -64.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062819004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.835 kcal (2) G-P(sol) polarization free energy of solvation -64.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds