Wall clock time and date at job start Mon Mar 30 2020 03:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99919 * 2 1 4 4 H 1.48507 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47322 * 300.00001 * 3 2 1 6 6 H 1.48506 * 109.47303 * 60.00132 * 3 2 1 7 7 C 1.37878 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99706 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99787 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.47916 * 110.99544 * 309.90511 * 10 9 7 12 12 C 1.54604 * 102.62279 * 149.12318 * 11 10 9 13 13 H 1.08992 * 110.73925 * 216.13427 * 12 11 10 14 14 C 1.52996 * 110.73962 * 92.80217 * 12 11 10 15 15 C 1.52997 * 109.47037 * 180.12879 * 14 12 11 16 16 N 1.46908 * 109.47339 * 180.02562 * 15 14 12 17 17 C 1.51584 * 102.83518 * 334.47027 * 12 11 10 18 18 C 1.37922 * 131.56105 * 196.30489 * 17 12 11 19 19 C 1.38296 * 120.07757 * 179.60443 * 18 17 12 20 20 C 1.38307 * 119.88443 * 359.41556 * 19 18 17 21 21 C 1.37908 * 120.26500 * 0.73251 * 20 19 18 22 22 C 1.38962 * 107.95322 * 15.91620 * 17 12 11 23 23 H 0.97006 * 120.00118 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47390 * 59.99744 * 9 7 2 25 25 H 1.09000 * 109.47234 * 299.99540 * 9 7 2 26 26 H 1.09000 * 110.78017 * 267.40482 * 11 10 9 27 27 H 1.08996 * 110.77994 * 30.84345 * 11 10 9 28 28 H 1.08998 * 109.47554 * 300.13277 * 14 12 11 29 29 H 1.09003 * 109.46651 * 60.13539 * 14 12 11 30 30 H 1.09005 * 109.47598 * 300.00400 * 15 14 12 31 31 H 1.09001 * 109.47358 * 60.00643 * 15 14 12 32 32 H 1.00900 * 111.00118 * 180.02562 * 16 15 14 33 33 H 1.00898 * 110.99226 * 303.95559 * 16 15 14 34 34 H 1.08002 * 119.95855 * 359.32223 * 18 17 12 35 35 H 1.08000 * 120.06115 * 179.69659 * 19 18 17 36 36 H 1.08002 * 119.87087 * 180.42589 * 20 19 18 37 37 H 1.08000 * 119.90767 * 179.68589 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 3.2242 -3.4424 -1.0599 12 6 4.4669 -4.1296 -0.4487 13 1 5.3773 -3.5983 -0.7261 14 6 4.5412 -5.5961 -0.8781 15 6 5.7776 -6.2478 -0.2555 16 7 5.8494 -7.6558 -0.6683 17 6 4.2139 -4.0189 1.0418 18 6 5.0539 -4.1656 2.1259 19 6 4.5646 -4.0016 3.4090 20 6 3.2340 -3.6783 3.6030 21 6 2.3892 -3.5335 2.5226 22 6 2.8728 -3.7054 1.2265 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 2.9173 -3.9439 -1.9778 27 1 3.4171 -2.3851 -1.2416 28 1 3.6463 -6.1192 -0.5413 29 1 4.6085 -5.6536 -1.9645 30 1 6.6727 -5.7247 -0.5923 31 1 5.7104 -6.1904 0.8309 32 1 6.6579 -8.1088 -0.2694 33 1 5.0027 -8.1476 -0.4246 34 1 6.0939 -4.4133 1.9727 35 1 5.2215 -4.1214 4.2578 36 1 2.8537 -3.5435 4.6049 37 1 1.3499 -3.2859 2.6811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063129004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:25 Heat of formation + Delta-G solvation = 28.889971 kcal Electronic energy + Delta-G solvation = -18054.485101 eV Core-core repulsion = 15410.057996 eV Total energy + Delta-G solvation = -2644.427105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24210 -36.26256 -35.57916 -33.12274 -31.94690 -29.40472 -28.96215 -27.31025 -25.79371 -22.75117 -22.36567 -21.74155 -20.07306 -19.74080 -16.74086 -16.10770 -15.73115 -15.36717 -15.00029 -14.79699 -14.33757 -13.91232 -13.65540 -13.24415 -12.75551 -12.34627 -12.23858 -11.97141 -11.73151 -11.66747 -11.23170 -11.09943 -10.77956 -10.74097 -10.59823 -10.23277 -10.08526 -9.98047 -9.88568 -8.82111 -8.71118 -8.52748 -8.19819 -6.87990 -6.12286 -4.21811 1.97880 2.08426 3.22506 3.30886 3.35039 4.29149 4.35370 4.54217 4.81233 5.04340 5.14479 5.19610 5.30582 5.50098 5.56858 5.59905 5.70732 5.80403 5.90658 6.00194 6.15434 6.22519 6.31973 6.41856 6.55274 6.56865 6.70088 6.86170 7.03966 7.08259 7.11839 7.18296 7.36847 7.38066 7.49825 7.78506 7.82946 8.12155 8.18971 8.85199 9.44798 10.92848 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024233 B = 0.007225 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.148122 B = 3874.598786 C = 4321.252773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.181 3.819 10 N -0.484 5.484 11 C 0.049 3.951 12 C -0.050 4.050 13 H 0.076 0.924 14 C -0.098 4.098 15 C 0.058 3.942 16 N -0.854 5.854 17 C -0.153 4.153 18 C -0.084 4.084 19 C -0.172 4.172 20 C -0.096 4.096 21 C -0.136 4.136 22 C 0.151 3.849 23 H 0.263 0.737 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.336 0.664 33 H 0.339 0.661 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.317 -9.797 2.492 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.587 4.587 8 H 0.081 0.919 9 C 0.057 3.943 10 N -0.196 5.196 11 C -0.077 4.077 12 C -0.069 4.069 13 H 0.094 0.906 14 C -0.136 4.136 15 C -0.073 4.073 16 N -0.382 5.382 17 C -0.156 4.156 18 C -0.103 4.103 19 C -0.191 4.191 20 C -0.115 4.115 21 C -0.157 4.157 22 C 0.050 3.950 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.840 -9.814 1.538 13.298 hybrid contribution 0.592 1.501 1.249 2.040 sum 9.432 -8.313 2.787 12.878 Atomic orbital electron populations 1.69949 1.06038 1.26979 1.49701 1.24927 0.94778 0.99223 0.94600 0.86542 0.80202 0.83630 0.77752 1.19699 1.20812 1.20820 1.21679 0.93357 0.91420 1.52232 0.91949 1.19980 0.90752 0.84821 0.98727 1.60822 1.15619 1.42472 1.00725 1.23310 0.88352 1.01713 0.94353 1.20848 0.99114 0.95745 0.91226 0.90578 1.21459 0.97418 0.94188 1.00523 1.21900 0.98950 0.88656 0.97759 1.58771 1.07939 1.03716 1.67801 1.20428 0.93936 1.06499 0.94698 1.20194 0.98150 1.00274 0.91633 1.20718 0.95766 1.06521 0.96099 1.20744 0.93636 0.99245 0.97852 1.20471 1.00460 1.04325 0.90439 1.19671 0.91478 0.92598 0.91275 0.92693 0.94390 0.94500 0.90377 0.89496 0.91665 0.91192 0.91514 0.94812 0.85206 0.84881 0.87440 0.87067 0.86748 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.55 -14.78 7.52 -34.44 -0.26 -15.03 16 8 H 0.06 1.70 6.27 -52.48 -0.33 1.37 16 9 C 0.18 4.58 5.12 -4.98 -0.03 4.56 16 10 N -0.48 -10.55 5.29 -170.37 -0.90 -11.45 16 11 C 0.05 0.94 6.10 -2.42 -0.01 0.93 16 12 C -0.05 -0.83 3.12 -90.50 -0.28 -1.11 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.10 -1.39 4.92 -26.73 -0.13 -1.53 16 15 C 0.06 0.71 6.59 -3.82 -0.03 0.69 16 16 N -0.85 -9.27 9.63 -10.36 -0.10 -9.37 16 17 C -0.15 -2.78 5.18 -104.03 -0.54 -3.32 16 18 C -0.08 -1.36 8.75 -39.68 -0.35 -1.71 16 19 C -0.17 -2.71 10.06 -39.53 -0.40 -3.11 16 20 C -0.10 -1.64 10.02 -39.68 -0.40 -2.04 16 21 C -0.14 -2.73 9.48 -39.27 -0.37 -3.10 16 22 C 0.15 3.14 5.35 -83.41 -0.45 2.69 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.04 1.00 6.86 -51.93 -0.36 0.64 16 26 H 0.08 1.38 7.91 -51.93 -0.41 0.97 16 27 H 0.09 1.86 5.52 -51.93 -0.29 1.57 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.43 6.03 -51.93 -0.31 0.12 16 32 H 0.34 2.98 9.08 -39.29 -0.36 2.62 16 33 H 0.34 3.47 8.99 -39.29 -0.35 3.12 16 34 H 0.11 1.47 7.61 -52.49 -0.40 1.08 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.12 2.42 7.17 -52.49 -0.38 2.04 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -29.00 297.28 -9.42 -38.42 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.28 Total: 6.86 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -3.33 Total: -20.30 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.27 Total: -45.69 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.00 -9.42 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063129004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.307 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds