Wall clock time and date at job start Mon Mar 30 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46990 * 2 1 4 4 C 1.50693 * 109.47162 * 239.99941 * 2 1 3 5 5 H 1.07998 * 120.00185 * 245.45530 * 4 2 1 6 6 C 1.37881 * 120.00201 * 65.45891 * 4 2 1 7 7 N 1.31523 * 119.99848 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00327 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47144 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47318 * 120.00034 * 8 6 4 11 11 H 1.48497 * 109.47518 * 240.00122 * 8 6 4 12 12 N 1.46900 * 109.47057 * 119.99953 * 2 1 3 13 13 C 1.46426 * 110.99803 * 171.82714 * 12 2 1 14 14 C 1.53380 * 108.66694 * 72.18869 * 13 12 2 15 15 H 1.09002 * 109.77043 * 308.62676 * 14 13 12 16 16 N 1.46894 * 109.76988 * 187.83898 * 14 13 12 17 17 C 1.53043 * 107.93063 * 68.23227 * 14 13 12 18 18 C 1.50806 * 109.65583 * 312.69339 * 17 14 13 19 19 C 1.38620 * 118.12406 * 195.75468 * 18 17 14 20 20 C 1.38049 * 120.48347 * 180.70713 * 19 18 17 21 21 C 1.38316 * 119.88953 * 359.40009 * 20 19 18 22 22 C 1.37806 * 119.95333 * 0.15111 * 21 20 19 23 23 C 1.38366 * 122.01359 * 15.66083 * 18 17 14 24 24 H 1.08998 * 109.47186 * 68.12029 * 1 2 3 25 25 H 1.09006 * 109.47033 * 188.11897 * 1 2 3 26 26 H 1.09000 * 109.47276 * 308.11862 * 1 2 3 27 27 H 0.96996 * 120.00088 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.60784 * 191.94531 * 13 12 2 29 29 H 1.09000 * 109.60322 * 312.27053 * 13 12 2 30 30 H 1.00902 * 111.00091 * 179.97438 * 16 14 13 31 31 H 1.00903 * 111.00345 * 303.95317 * 16 14 13 32 32 H 1.08996 * 109.44139 * 72.74851 * 17 14 13 33 33 H 1.09003 * 109.43999 * 192.67574 * 17 14 13 34 34 H 1.08004 * 119.75946 * 0.42871 * 19 18 17 35 35 H 1.07999 * 120.05476 * 179.67451 * 20 19 18 36 36 H 1.07998 * 120.01864 * 180.16840 * 21 20 19 37 37 H 1.07996 * 119.78944 * 180.12339 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6370 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.1289 0.9508 -2.5973 8 14 2.4178 -1.0576 -4.0047 9 1 3.1310 -2.2970 -3.6042 10 1 1.2691 -1.4083 -4.8781 11 1 3.3484 -0.1676 -4.7444 12 7 2.0197 -0.6925 1.1994 13 6 3.4703 -0.8826 1.1401 14 6 4.1524 0.4746 1.3525 15 1 3.7278 1.2114 0.6705 16 7 5.5961 0.3481 1.1126 17 6 3.9039 0.9055 2.7998 18 6 2.4455 0.7265 3.1391 19 6 1.9552 1.3600 4.2704 20 6 0.6313 1.2175 4.6346 21 6 -0.2176 0.4476 3.8601 22 6 0.2605 -0.1778 2.7290 23 6 1.5997 -0.0415 2.3585 24 1 -0.3633 0.3830 -0.9536 25 1 -0.3633 -1.0174 0.1451 26 1 -0.3634 0.6344 0.8085 27 1 0.9619 1.3260 -3.4761 28 1 3.7809 -1.5745 1.9230 29 1 3.7468 -1.2851 0.1656 30 1 6.0638 1.2320 1.2471 31 1 5.9988 -0.3673 1.6993 32 1 4.5097 0.2948 3.4692 33 1 4.1773 1.9540 2.9182 34 1 2.6150 1.9659 4.8739 35 1 0.2579 1.7100 5.5203 36 1 -1.2543 0.3369 4.1416 37 1 -0.4051 -0.7767 2.1252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069731445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:07 Heat of formation + Delta-G solvation = 35.437429 kcal Electronic energy + Delta-G solvation = -18531.772534 eV Core-core repulsion = 15887.629348 eV Total energy + Delta-G solvation = -2644.143186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15685 -36.74590 -35.12028 -32.70866 -31.53052 -29.54499 -29.13104 -27.36087 -25.13212 -24.11614 -21.93548 -21.51905 -20.95114 -18.65751 -16.50067 -15.95640 -15.75892 -15.49731 -15.05869 -14.35477 -13.96506 -13.54235 -13.30879 -13.16021 -12.97565 -12.78091 -12.32252 -12.01426 -11.46816 -11.20353 -10.99309 -10.90332 -10.72000 -10.64612 -10.43143 -10.29367 -10.00508 -9.81009 -9.08379 -8.64684 -8.38056 -8.32962 -8.19675 -7.00171 -6.05725 -4.10227 1.83011 1.91878 3.30360 3.38212 3.42825 4.19531 4.40938 4.68302 4.97374 5.14367 5.26873 5.29167 5.38707 5.43975 5.50469 5.71857 5.82673 5.98993 6.03320 6.08536 6.30971 6.47660 6.61250 6.74409 6.77114 6.84707 6.93183 6.98228 7.03582 7.12479 7.32674 7.35333 7.53578 7.72502 7.74558 7.81210 8.06973 8.20689 8.58762 8.94817 9.54758 11.01990 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024710 B = 0.008557 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.867285 B = 3271.369193 C = 4070.861393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.221 3.779 3 H 0.013 0.987 4 C -0.507 4.507 5 H 0.067 0.933 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.497 5.497 13 C 0.071 3.929 14 C 0.059 3.941 15 H 0.093 0.907 16 N -0.833 5.833 17 C -0.106 4.106 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.154 4.154 21 C -0.116 4.116 22 C -0.122 4.122 23 C 0.138 3.862 24 H 0.079 0.921 25 H 0.036 0.964 26 H 0.021 0.979 27 H 0.261 0.739 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.335 0.665 31 H 0.333 0.667 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 0.400 11.159 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.119 3.881 3 H 0.030 0.970 4 C -0.545 4.545 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.212 5.212 13 C -0.057 4.057 14 C -0.054 4.054 15 H 0.111 0.889 16 N -0.360 5.360 17 C -0.146 4.146 18 C -0.136 4.136 19 C -0.127 4.127 20 C -0.173 4.173 21 C -0.134 4.134 22 C -0.142 4.142 23 C 0.040 3.960 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.330 -0.169 10.159 10.424 hybrid contribution 0.674 0.732 0.293 1.038 sum 3.004 0.564 10.453 10.890 Atomic orbital electron populations 1.22073 0.97741 0.98571 1.01170 1.19338 0.92405 0.92389 0.83988 0.96980 1.21128 1.35328 1.08378 0.89690 0.91536 1.24912 0.95085 0.94951 0.99036 1.69944 1.40290 1.18971 1.23708 0.86440 0.78488 0.79741 0.82771 1.19624 1.21111 1.21061 1.58922 1.11893 1.48311 1.02047 1.22131 0.85734 0.94166 1.03659 1.22152 0.88619 1.01105 0.93552 0.88858 1.58807 1.03171 1.11393 1.62667 1.21386 0.93224 1.01087 0.98859 1.19841 0.96190 0.99355 0.98254 1.20821 0.95587 0.99864 0.96461 1.20825 0.93949 1.01921 1.00602 1.20906 0.99156 0.98143 0.95232 1.21327 0.95080 1.01197 0.96558 1.18824 0.93247 0.91251 0.92683 0.90193 0.94516 0.96044 0.92935 0.92948 0.87302 0.85317 0.85492 0.91667 0.91613 0.87252 0.87037 0.86667 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 7.64 37.16 0.28 -3.01 16 2 C 0.22 5.49 1.63 -68.87 -0.11 5.38 16 3 H 0.01 0.35 6.82 -51.93 -0.35 -0.01 16 4 C -0.51 -13.52 7.56 -34.44 -0.26 -13.78 16 5 H 0.07 1.78 6.41 -52.49 -0.34 1.44 16 6 C 0.06 1.69 5.28 -17.81 -0.09 1.59 16 7 N -0.89 -25.11 11.73 55.43 0.65 -24.46 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.50 -10.78 4.44 -165.06 -0.73 -11.51 16 13 C 0.07 1.41 5.14 -3.89 -0.02 1.39 16 14 C 0.06 1.05 3.31 -67.50 -0.22 0.82 16 15 H 0.09 2.02 6.59 -51.93 -0.34 1.67 16 16 N -0.83 -12.46 9.27 -4.48 -0.04 -12.50 16 17 C -0.11 -1.67 5.40 -27.81 -0.15 -1.82 16 18 C -0.13 -2.36 5.74 -104.38 -0.60 -2.96 16 19 C -0.11 -1.70 9.63 -39.51 -0.38 -2.08 16 20 C -0.15 -2.30 10.05 -39.62 -0.40 -2.70 16 21 C -0.12 -1.83 10.04 -39.71 -0.40 -2.23 16 22 C -0.12 -2.26 7.37 -39.22 -0.29 -2.55 16 23 C 0.14 2.76 5.04 -83.85 -0.42 2.34 16 24 H 0.08 2.11 6.37 -51.93 -0.33 1.77 16 25 H 0.04 0.84 7.51 -51.93 -0.39 0.45 16 26 H 0.02 0.47 5.84 -51.93 -0.30 0.16 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 29 H 0.11 2.39 5.71 -51.93 -0.30 2.09 16 30 H 0.33 4.31 9.05 -39.29 -0.36 3.96 16 31 H 0.33 4.26 8.99 -39.29 -0.35 3.91 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.13 2.45 6.03 -52.49 -0.32 2.13 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -28.35 286.32 -8.94 -37.29 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.05 Total: 10.27 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -3.07 Total: -19.61 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.12 Total: -48.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.35 -8.94 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.730 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds