Wall clock time and date at job start Mon Mar 30 2020 04:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46990 * 2 1 4 4 C 1.50693 * 109.47162 * 239.99941 * 2 1 3 5 5 H 1.07998 * 120.00185 * 245.45530 * 4 2 1 6 6 C 1.37881 * 120.00201 * 65.45891 * 4 2 1 7 7 N 1.31523 * 119.99848 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00327 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47144 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47318 * 120.00034 * 8 6 4 11 11 H 1.48497 * 109.47518 * 240.00122 * 8 6 4 12 12 N 1.46900 * 109.47057 * 119.99953 * 2 1 3 13 13 C 1.46426 * 110.99803 * 171.82714 * 12 2 1 14 14 C 1.53380 * 108.66694 * 72.18869 * 13 12 2 15 15 H 1.09002 * 109.77043 * 308.62676 * 14 13 12 16 16 N 1.46894 * 109.76988 * 187.83898 * 14 13 12 17 17 C 1.53043 * 107.93063 * 68.23227 * 14 13 12 18 18 C 1.50806 * 109.65583 * 312.69339 * 17 14 13 19 19 C 1.38620 * 118.12406 * 195.75468 * 18 17 14 20 20 C 1.38049 * 120.48347 * 180.70713 * 19 18 17 21 21 C 1.38316 * 119.88953 * 359.40009 * 20 19 18 22 22 C 1.37806 * 119.95333 * 0.15111 * 21 20 19 23 23 C 1.38366 * 122.01359 * 15.66083 * 18 17 14 24 24 H 1.08998 * 109.47186 * 68.12029 * 1 2 3 25 25 H 1.09006 * 109.47033 * 188.11897 * 1 2 3 26 26 H 1.09000 * 109.47276 * 308.11862 * 1 2 3 27 27 H 0.96996 * 120.00088 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.60784 * 191.94531 * 13 12 2 29 29 H 1.09000 * 109.60322 * 312.27053 * 13 12 2 30 30 H 1.00902 * 111.00091 * 179.97438 * 16 14 13 31 31 H 1.00903 * 111.00345 * 303.95317 * 16 14 13 32 32 H 1.08996 * 109.44139 * 72.74851 * 17 14 13 33 33 H 1.09003 * 109.43999 * 192.67574 * 17 14 13 34 34 H 1.08004 * 119.75946 * 0.42871 * 19 18 17 35 35 H 1.07999 * 120.05476 * 179.67451 * 20 19 18 36 36 H 1.07998 * 120.01864 * 180.16840 * 21 20 19 37 37 H 1.07996 * 119.78944 * 180.12339 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6370 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.1289 0.9508 -2.5973 8 14 2.4178 -1.0576 -4.0047 9 1 3.1310 -2.2970 -3.6042 10 1 1.2691 -1.4083 -4.8781 11 1 3.3484 -0.1676 -4.7444 12 7 2.0197 -0.6925 1.1994 13 6 3.4703 -0.8826 1.1401 14 6 4.1524 0.4746 1.3525 15 1 3.7278 1.2114 0.6705 16 7 5.5961 0.3481 1.1126 17 6 3.9039 0.9055 2.7998 18 6 2.4455 0.7265 3.1391 19 6 1.9552 1.3600 4.2704 20 6 0.6313 1.2175 4.6346 21 6 -0.2176 0.4476 3.8601 22 6 0.2605 -0.1778 2.7290 23 6 1.5997 -0.0415 2.3585 24 1 -0.3633 0.3830 -0.9536 25 1 -0.3633 -1.0174 0.1451 26 1 -0.3634 0.6344 0.8085 27 1 0.9619 1.3260 -3.4761 28 1 3.7809 -1.5745 1.9230 29 1 3.7468 -1.2851 0.1656 30 1 6.0638 1.2320 1.2471 31 1 5.9988 -0.3673 1.6993 32 1 4.5097 0.2948 3.4692 33 1 4.1773 1.9540 2.9182 34 1 2.6150 1.9659 4.8739 35 1 0.2579 1.7100 5.5203 36 1 -1.2543 0.3369 4.1416 37 1 -0.4051 -0.7767 2.1252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069731445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:06 Heat of formation + Delta-G solvation = 16.521843 kcal Electronic energy + Delta-G solvation = -18532.592776 eV Core-core repulsion = 15887.629348 eV Total energy + Delta-G solvation = -2644.963428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.60130 -38.14263 -36.69159 -34.59955 -32.86342 -31.16409 -30.75512 -28.69529 -27.13371 -25.63574 -23.38449 -22.92220 -22.61879 -20.16506 -18.33075 -17.51445 -17.28070 -16.97653 -16.51688 -16.07416 -15.43410 -14.96174 -14.89697 -14.69714 -14.30798 -14.20515 -13.87286 -13.58669 -13.10169 -12.94533 -12.72635 -12.57648 -12.35621 -12.19269 -12.08044 -12.02565 -11.84371 -11.47667 -11.00453 -10.53171 -10.02203 -9.63172 -9.49245 -8.56080 -8.14504 -6.25060 0.53636 0.59371 1.40779 1.42573 1.54394 2.41508 2.88831 3.15964 3.23630 3.64488 3.83391 3.91606 4.09157 4.18947 4.32605 4.41966 4.49538 4.63926 4.67537 4.75642 4.82698 4.94345 4.98768 5.08760 5.16448 5.24369 5.28262 5.44168 5.54626 5.63228 5.69525 5.71118 5.78797 6.12877 6.19208 6.21807 6.36467 6.67158 6.85915 6.92324 7.43299 8.93080 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024710 B = 0.008557 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.867285 B = 3271.369193 C = 4070.861393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.233 3.767 3 H -0.029 1.029 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.505 5.505 13 C 0.072 3.928 14 C 0.071 3.929 15 H 0.046 0.954 16 N -0.837 5.837 17 C -0.097 4.097 18 C -0.145 4.145 19 C -0.110 4.110 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.142 4.142 23 C 0.099 3.901 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.262 0.738 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.349 0.651 31 H 0.349 0.651 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 0.603 13.379 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.130 3.870 3 H -0.011 1.011 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.208 1.208 12 N -0.221 5.221 13 C -0.056 4.056 14 C -0.043 4.043 15 H 0.065 0.935 16 N -0.368 5.368 17 C -0.136 4.136 18 C -0.149 4.149 19 C -0.128 4.128 20 C -0.162 4.162 21 C -0.134 4.134 22 C -0.162 4.162 23 C 0.001 3.999 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.959 0.029 12.413 12.761 hybrid contribution 0.474 0.710 -0.269 0.896 sum 3.434 0.739 12.144 12.642 Atomic orbital electron populations 1.21870 0.97402 0.98728 0.99993 1.18974 0.92509 0.90257 0.85308 1.01137 1.21368 1.35046 1.08164 0.90841 0.92150 1.25669 0.95335 0.95633 1.01814 1.70064 1.41368 1.20234 1.24259 0.85485 0.78014 0.78729 0.79302 1.19116 1.20543 1.20823 1.58815 1.12870 1.48720 1.01713 1.22057 0.85344 0.95622 1.02545 1.21759 0.89767 0.98505 0.94262 0.93530 1.58663 1.01775 1.12848 1.63490 1.21335 0.92603 1.02441 0.97243 1.20152 0.96955 0.99049 0.98704 1.21212 0.96568 0.99293 0.95761 1.21310 0.93440 1.00388 1.01032 1.21254 1.00804 0.97258 0.94095 1.21394 0.94641 1.02179 0.97951 1.19024 0.94537 0.93551 0.92750 0.92975 0.94210 0.94764 0.92928 0.91132 0.90269 0.83755 0.83704 0.89184 0.90008 0.84087 0.83262 0.83896 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 7.64 71.98 0.55 -5.55 16 2 C 0.23 12.15 1.63 44.17 0.07 12.22 16 3 H -0.03 -1.71 6.82 -2.39 -0.02 -1.73 16 4 C -0.52 -28.68 7.56 25.60 0.19 -28.48 16 5 H 0.06 3.36 6.41 -2.91 -0.02 3.34 16 6 C 0.01 0.81 5.28 84.65 0.45 1.25 16 7 N -0.92 -53.76 11.73 21.45 0.25 -53.51 16 8 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.51 -22.62 4.44 -676.13 -3.00 -25.62 16 13 C 0.07 2.93 5.14 86.52 0.44 3.37 16 14 C 0.07 2.53 3.31 45.06 0.15 2.68 16 15 H 0.05 2.12 6.59 -2.39 -0.02 2.10 16 16 N -0.84 -24.33 9.27 -168.10 -1.56 -25.89 16 17 C -0.10 -2.86 5.40 29.90 0.16 -2.69 16 18 C -0.15 -4.92 5.74 -19.71 -0.11 -5.03 16 19 C -0.11 -3.04 9.63 22.32 0.21 -2.83 16 20 C -0.14 -3.69 10.05 22.24 0.22 -3.47 16 21 C -0.12 -3.37 10.04 22.19 0.22 -3.15 16 22 C -0.14 -5.21 7.37 22.50 0.17 -5.05 16 23 C 0.10 3.93 5.04 38.30 0.19 4.13 16 24 H 0.05 2.86 6.37 -2.39 -0.02 2.85 16 25 H 0.04 1.89 7.51 -2.38 -0.02 1.88 16 26 H 0.03 1.57 5.84 -2.39 -0.01 1.55 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16 29 H 0.08 3.62 5.71 -2.39 -0.01 3.61 16 30 H 0.35 8.51 9.05 -89.69 -0.81 7.69 16 31 H 0.35 8.30 8.99 -89.69 -0.81 7.49 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.12 4.49 6.03 -2.91 -0.02 4.47 16 Total: -1.00 -63.91 286.32 0.12 -63.79 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.53 Total: 27.28 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 2.92 Total: -32.59 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -4.31 Total: -105.02 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -63.91 0.12 -63.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.315 kcal (2) G-P(sol) polarization free energy of solvation -63.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds