Wall clock time and date at job start Mon Mar 30 2020 03:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47199 * 89.99867 * 3 2 1 5 5 H 1.48499 * 109.47152 * 329.99762 * 3 2 1 6 6 H 1.48504 * 109.47087 * 209.99660 * 3 2 1 7 7 C 1.37872 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99971 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00073 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47219 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47400 * 174.87025 * 10 9 7 12 12 C 1.46420 * 111.00160 * 67.36797 * 11 10 9 13 13 C 1.53380 * 108.66512 * 181.16505 * 12 11 10 14 14 H 1.08993 * 109.77610 * 308.66863 * 13 12 11 15 15 N 1.46899 * 109.77108 * 187.92846 * 13 12 11 16 16 C 1.53048 * 107.91698 * 68.27373 * 13 12 11 17 17 C 1.50805 * 109.64830 * 312.68011 * 16 13 12 18 18 C 1.38613 * 118.12589 * 195.49445 * 17 16 13 19 19 C 1.38053 * 120.49036 * 180.28574 * 18 17 16 20 20 C 1.38309 * 119.88624 * 0.02562 * 19 18 17 21 21 C 1.37808 * 119.95498 * 359.84628 * 20 19 18 22 22 C 1.38378 * 122.01197 * 15.53676 * 17 16 13 23 23 H 0.97007 * 120.00074 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47201 * 300.00155 * 9 7 2 25 25 H 1.08994 * 109.47425 * 60.00126 * 9 7 2 26 26 H 1.09001 * 109.47656 * 294.87064 * 10 9 7 27 27 H 1.09007 * 109.47062 * 54.86862 * 10 9 7 28 28 H 1.08994 * 109.60717 * 300.92475 * 12 11 10 29 29 H 1.09007 * 109.60214 * 61.41709 * 12 11 10 30 30 H 1.00903 * 110.99947 * 180.02562 * 15 13 12 31 31 H 1.00900 * 111.00125 * 303.95729 * 15 13 12 32 32 H 1.09000 * 109.44413 * 72.73153 * 16 13 12 33 33 H 1.08999 * 109.44356 * 192.62342 * 16 13 12 34 34 H 1.08001 * 119.75568 * 0.26311 * 18 17 16 35 35 H 1.07991 * 120.05326 * 180.02562 * 19 18 17 36 36 H 1.07996 * 120.02379 * 179.83460 * 20 19 18 37 37 H 1.08003 * 119.78928 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4465 2.6526 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4853 -2.6384 -0.1223 12 6 6.1134 -2.0759 1.0748 13 6 7.6345 -2.0767 0.8774 14 1 7.9661 -3.0687 0.5713 15 7 8.2984 -1.6958 2.1312 16 6 7.9679 -1.0590 -0.2160 17 6 7.0484 -1.2611 -1.3941 18 6 7.3922 -0.6706 -2.6002 19 6 6.5828 -0.8190 -3.7086 20 6 5.4193 -1.5612 -3.6180 21 6 5.0722 -2.1534 -2.4231 22 6 5.8883 -2.0094 -1.2994 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6804 -0.8888 25 1 3.8745 -0.6800 0.8911 26 1 3.7348 -3.1234 0.9331 27 1 3.5853 -3.1760 -0.8398 28 1 5.7646 -1.0543 1.2252 29 1 5.8569 -2.6840 1.9424 30 1 9.3015 -1.6900 2.0219 31 1 7.9655 -0.8017 2.4596 32 1 7.8390 -0.0501 0.1758 33 1 9.0013 -1.1945 -0.5349 34 1 8.2999 -0.0899 -2.6731 35 1 6.8577 -0.3562 -4.6449 36 1 4.7831 -1.6765 -4.4830 37 1 4.1633 -2.7328 -2.3554 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069731544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:45 Heat of formation + Delta-G solvation = 27.313600 kcal Electronic energy + Delta-G solvation = -18239.724283 eV Core-core repulsion = 15595.228821 eV Total energy + Delta-G solvation = -2644.495462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46492 -36.86032 -35.78453 -32.90375 -31.79360 -30.18688 -29.42495 -27.80883 -25.67851 -23.84263 -22.23356 -21.86707 -20.35612 -19.18369 -17.09132 -16.80649 -16.03215 -15.58112 -14.98228 -14.48302 -14.21978 -14.16432 -13.58856 -13.31026 -13.07128 -13.04642 -12.93504 -12.38949 -12.23206 -11.61864 -11.40571 -11.21274 -11.03671 -10.90388 -10.60133 -10.44038 -9.89173 -9.86296 -9.31345 -9.26507 -8.82591 -8.59354 -8.39091 -7.20923 -6.10550 -4.09160 1.70775 1.78443 3.25260 3.33547 3.38753 3.90535 4.23798 4.40027 4.58142 4.77126 4.96230 5.10525 5.20503 5.23412 5.36289 5.45228 5.58824 5.68189 5.75967 5.84410 5.90207 6.05667 6.06113 6.16398 6.26501 6.37235 6.53335 6.60163 6.73560 6.89624 6.99475 7.07422 7.17616 7.21607 7.31124 7.45798 7.71680 7.78355 8.44631 8.93091 9.51924 11.02481 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.008631 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.450789 B = 3243.389911 C = 3783.803760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.074 0.926 9 C -0.042 4.042 10 C 0.065 3.935 11 N -0.497 5.497 12 C 0.062 3.938 13 C 0.090 3.910 14 H 0.092 0.908 15 N -0.840 5.840 16 C -0.105 4.105 17 C -0.137 4.137 18 C -0.098 4.098 19 C -0.160 4.160 20 C -0.097 4.097 21 C -0.145 4.145 22 C 0.147 3.853 23 H 0.264 0.736 24 H 0.025 0.975 25 H 0.010 0.990 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.342 0.658 31 H 0.340 0.660 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.631 -1.717 -2.272 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.092 0.908 9 C -0.080 4.080 10 C -0.059 4.059 11 N -0.209 5.209 12 C -0.065 4.065 13 C -0.022 4.022 14 H 0.110 0.890 15 N -0.368 5.368 16 C -0.145 4.145 17 C -0.141 4.141 18 C -0.117 4.117 19 C -0.179 4.179 20 C -0.115 4.115 21 C -0.165 4.165 22 C 0.047 3.953 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.028 0.972 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.246 -2.793 -1.866 16.590 hybrid contribution 0.428 2.581 -0.580 2.680 sum 16.675 -0.212 -2.447 16.854 Atomic orbital electron populations 1.69903 1.06219 1.26931 1.50806 1.24968 0.94664 0.98998 0.94405 0.86845 0.80556 0.83916 0.78484 1.20327 1.21227 1.19051 1.20956 0.88882 0.94597 1.51261 0.90766 1.20163 0.98142 0.92930 0.96791 1.22405 0.81158 0.99693 1.02656 1.58409 1.10535 1.51103 1.00891 1.22088 0.92483 0.99563 0.92323 1.21558 0.94431 0.98761 0.87484 0.89010 1.58826 1.10123 1.37523 1.30365 1.21343 0.98271 0.99951 0.94900 1.19289 0.97309 1.01758 0.95755 1.20790 0.99313 0.99232 0.92348 1.20852 0.96308 1.02414 0.98344 1.20920 0.96322 0.96931 0.97352 1.21269 1.00122 1.02867 0.92241 1.18606 0.93537 0.91738 0.91449 0.92661 0.95636 0.97170 0.90541 0.90092 0.93207 0.89156 0.84584 0.84703 0.91424 0.91174 0.86927 0.86766 0.86260 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.04 -0.99 3.38 -27.88 -0.09 -1.09 16 10 C 0.07 1.29 4.78 -3.83 -0.02 1.27 16 11 N -0.50 -8.77 4.72 -171.29 -0.81 -9.58 16 12 C 0.06 0.99 4.82 -3.89 -0.02 0.97 16 13 C 0.09 1.16 3.47 -67.49 -0.23 0.93 16 14 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 15 N -0.84 -8.98 9.28 -4.48 -0.04 -9.02 16 16 C -0.11 -1.36 5.40 -27.81 -0.15 -1.51 16 17 C -0.14 -2.19 5.74 -104.38 -0.60 -2.79 16 18 C -0.10 -1.44 9.63 -39.51 -0.38 -1.82 16 19 C -0.16 -2.35 10.05 -39.62 -0.40 -2.75 16 20 C -0.10 -1.54 10.03 -39.71 -0.40 -1.94 16 21 C -0.14 -2.59 7.82 -39.22 -0.31 -2.89 16 22 C 0.15 2.61 4.79 -83.85 -0.40 2.21 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.03 0.63 5.24 -51.93 -0.27 0.36 16 25 H 0.01 0.24 6.25 -51.93 -0.32 -0.08 16 26 H 0.08 1.48 8.11 -51.93 -0.42 1.05 16 27 H 0.08 1.59 6.11 -51.93 -0.32 1.27 16 28 H 0.05 0.87 6.55 -51.93 -0.34 0.53 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.34 2.90 9.06 -39.29 -0.36 2.54 16 31 H 0.34 3.43 8.99 -39.29 -0.35 3.08 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.13 2.39 5.91 -52.48 -0.31 2.08 16 LS Contribution 290.47 15.07 4.38 4.38 Total: -1.00 -30.81 290.47 -9.04 -39.85 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.24 Total: 6.16 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.43 Total: -22.30 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.08 Total: -45.44 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.81 -9.04 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.165 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds