Wall clock time and date at job start Mon Mar 30 2020 03:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47199 * 89.99867 * 3 2 1 5 5 H 1.48499 * 109.47152 * 329.99762 * 3 2 1 6 6 H 1.48504 * 109.47087 * 209.99660 * 3 2 1 7 7 C 1.37872 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99971 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00073 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47219 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47400 * 174.87025 * 10 9 7 12 12 C 1.46420 * 111.00160 * 67.36797 * 11 10 9 13 13 C 1.53380 * 108.66512 * 181.16505 * 12 11 10 14 14 H 1.08993 * 109.77610 * 308.66863 * 13 12 11 15 15 N 1.46899 * 109.77108 * 187.92846 * 13 12 11 16 16 C 1.53048 * 107.91698 * 68.27373 * 13 12 11 17 17 C 1.50805 * 109.64830 * 312.68011 * 16 13 12 18 18 C 1.38613 * 118.12589 * 195.49445 * 17 16 13 19 19 C 1.38053 * 120.49036 * 180.28574 * 18 17 16 20 20 C 1.38309 * 119.88624 * 0.02562 * 19 18 17 21 21 C 1.37808 * 119.95498 * 359.84628 * 20 19 18 22 22 C 1.38378 * 122.01197 * 15.53676 * 17 16 13 23 23 H 0.97007 * 120.00074 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47201 * 300.00155 * 9 7 2 25 25 H 1.08994 * 109.47425 * 60.00126 * 9 7 2 26 26 H 1.09001 * 109.47656 * 294.87064 * 10 9 7 27 27 H 1.09007 * 109.47062 * 54.86862 * 10 9 7 28 28 H 1.08994 * 109.60717 * 300.92475 * 12 11 10 29 29 H 1.09007 * 109.60214 * 61.41709 * 12 11 10 30 30 H 1.00903 * 110.99947 * 180.02562 * 15 13 12 31 31 H 1.00900 * 111.00125 * 303.95729 * 15 13 12 32 32 H 1.09000 * 109.44413 * 72.73153 * 16 13 12 33 33 H 1.08999 * 109.44356 * 192.62342 * 16 13 12 34 34 H 1.08001 * 119.75568 * 0.26311 * 18 17 16 35 35 H 1.07991 * 120.05326 * 180.02562 * 19 18 17 36 36 H 1.07996 * 120.02379 * 179.83460 * 20 19 18 37 37 H 1.08003 * 119.78928 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4465 2.6526 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4853 -2.6384 -0.1223 12 6 6.1134 -2.0759 1.0748 13 6 7.6345 -2.0767 0.8774 14 1 7.9661 -3.0687 0.5713 15 7 8.2984 -1.6958 2.1312 16 6 7.9679 -1.0590 -0.2160 17 6 7.0484 -1.2611 -1.3941 18 6 7.3922 -0.6706 -2.6002 19 6 6.5828 -0.8190 -3.7086 20 6 5.4193 -1.5612 -3.6180 21 6 5.0722 -2.1534 -2.4231 22 6 5.8883 -2.0094 -1.2994 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6804 -0.8888 25 1 3.8745 -0.6800 0.8911 26 1 3.7348 -3.1234 0.9331 27 1 3.5853 -3.1760 -0.8398 28 1 5.7646 -1.0543 1.2252 29 1 5.8569 -2.6840 1.9424 30 1 9.3015 -1.6900 2.0219 31 1 7.9655 -0.8017 2.4596 32 1 7.8390 -0.0501 0.1758 33 1 9.0013 -1.1945 -0.5349 34 1 8.2999 -0.0899 -2.6731 35 1 6.8577 -0.3562 -4.6449 36 1 4.7831 -1.6765 -4.4830 37 1 4.1633 -2.7328 -2.3554 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069731544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:45 Heat of formation + Delta-G solvation = 5.983948 kcal Electronic energy + Delta-G solvation = -18240.649206 eV Core-core repulsion = 15595.228821 eV Total energy + Delta-G solvation = -2645.420385 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72159 -38.07145 -37.03871 -34.96465 -32.95141 -31.93697 -30.71036 -28.95556 -27.24095 -25.30822 -23.53909 -23.30261 -21.85511 -20.38256 -19.10871 -18.11758 -17.20933 -16.77628 -16.57130 -15.93000 -15.60824 -15.49653 -14.89154 -14.76524 -14.55205 -14.42833 -14.19611 -14.00836 -13.51235 -13.31476 -12.90862 -12.67282 -12.46331 -12.15996 -12.04464 -11.97770 -11.75383 -11.56572 -11.35486 -10.86836 -10.62431 -9.71100 -9.58026 -8.54452 -8.35333 -6.39201 0.49891 0.54777 1.25457 1.28544 1.39622 2.27915 2.64695 2.99145 3.03216 3.56898 3.67826 3.84296 4.00734 4.04962 4.27369 4.31682 4.39204 4.44765 4.49825 4.52219 4.62988 4.69151 4.81931 4.86524 4.93747 5.05285 5.15171 5.25528 5.30858 5.38883 5.50970 5.59786 5.70090 5.91331 6.06812 6.18171 6.24190 6.45087 6.60207 6.67985 7.25102 8.80604 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.008631 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.450789 B = 3243.389911 C = 3783.803760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.526 4.526 8 H 0.040 0.960 9 C -0.026 4.026 10 C 0.076 3.924 11 N -0.495 5.495 12 C 0.059 3.941 13 C 0.103 3.897 14 H 0.087 0.913 15 N -0.839 5.839 16 C -0.101 4.101 17 C -0.145 4.145 18 C -0.100 4.100 19 C -0.157 4.157 20 C -0.109 4.109 21 C -0.172 4.172 22 C 0.117 3.883 23 H 0.267 0.733 24 H 0.018 0.982 25 H 0.010 0.990 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.358 0.642 31 H 0.346 0.654 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.812 -0.193 -2.557 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.565 4.565 8 H 0.058 0.942 9 C -0.065 4.065 10 C -0.049 4.049 11 N -0.207 5.207 12 C -0.068 4.068 13 C -0.010 4.010 14 H 0.105 0.895 15 N -0.369 5.369 16 C -0.140 4.140 17 C -0.149 4.149 18 C -0.118 4.118 19 C -0.176 4.176 20 C -0.128 4.128 21 C -0.192 4.192 22 C 0.018 3.982 23 H 0.076 0.924 24 H 0.036 0.964 25 H 0.029 0.971 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.172 0.828 31 H 0.159 0.841 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.461 -1.276 -2.151 19.621 hybrid contribution -0.571 2.048 -0.541 2.194 sum 18.890 0.772 -2.692 19.096 Atomic orbital electron populations 1.70040 1.07974 1.28114 1.52349 1.25850 0.95484 1.02920 0.94153 0.85775 0.79223 0.79246 0.79143 1.18982 1.20564 1.18425 1.21274 0.91300 0.93395 1.50488 0.94162 1.19960 0.94976 0.95412 0.96122 1.22127 0.83285 0.97136 1.02399 1.58424 1.08590 1.51890 1.01786 1.22168 0.94737 0.98293 0.91578 1.21331 0.92203 0.98846 0.88573 0.89472 1.58751 1.11205 1.38008 1.28979 1.21395 0.99015 1.00015 0.93593 1.19726 0.96869 1.00736 0.97530 1.21232 1.00281 0.98697 0.91608 1.21266 0.95310 1.01254 0.99789 1.21201 0.97424 0.97013 0.97155 1.21328 1.00207 1.04053 0.93637 1.18828 0.94856 0.93387 0.91108 0.92382 0.96384 0.97137 0.90494 0.90765 0.94855 0.89307 0.82774 0.84086 0.90817 0.88379 0.83591 0.83714 0.84864 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.34 13.96 21.44 0.30 -59.04 16 2 C 0.01 0.80 5.47 84.65 0.46 1.27 16 3 Si 0.94 45.49 27.47 68.60 1.88 47.37 16 4 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 7 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 8 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 9 C -0.03 -1.26 3.38 29.85 0.10 -1.16 16 10 C 0.08 3.10 4.78 86.30 0.41 3.51 16 11 N -0.49 -17.45 4.72 -695.83 -3.29 -20.74 16 12 C 0.06 1.82 4.82 86.52 0.42 2.24 16 13 C 0.10 2.43 3.47 45.06 0.16 2.58 16 14 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 15 N -0.84 -15.54 9.28 -168.09 -1.56 -17.10 16 16 C -0.10 -2.26 5.40 29.90 0.16 -2.10 16 17 C -0.14 -4.25 5.74 -19.71 -0.11 -4.36 16 18 C -0.10 -2.56 9.63 22.32 0.21 -2.35 16 19 C -0.16 -4.14 10.05 22.24 0.22 -3.92 16 20 C -0.11 -3.37 10.03 22.18 0.22 -3.15 16 21 C -0.17 -6.20 7.82 22.50 0.18 -6.02 16 22 C 0.12 4.10 4.79 38.30 0.18 4.29 16 23 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 24 H 0.02 0.89 5.24 -2.39 -0.01 0.88 16 25 H 0.01 0.50 6.25 -2.39 -0.01 0.48 16 26 H 0.08 3.07 8.11 -2.39 -0.02 3.05 16 27 H 0.07 3.09 6.11 -2.38 -0.01 3.08 16 28 H 0.03 1.13 6.55 -2.39 -0.02 1.11 16 29 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.36 4.81 9.06 -89.69 -0.81 4.00 16 31 H 0.35 5.99 8.99 -89.69 -0.81 5.19 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 35 H 0.15 2.87 8.06 -2.92 -0.02 2.85 16 36 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.11 4.37 5.91 -2.91 -0.02 4.35 16 Total: -1.00 -67.30 290.47 -0.39 -67.69 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.59 Total: 21.24 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 2.87 Total: -39.42 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -4.55 Total: -96.88 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -67.30 -0.39 -67.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.669 kcal (2) G-P(sol) polarization free energy of solvation -67.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds