Wall clock time and date at job start Mon Mar 30 2020 04:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46952 * 110.99861 * 2 1 4 4 C 1.53052 * 109.36151 * 183.18718 * 3 2 1 5 5 N 1.46955 * 109.36610 * 301.59661 * 4 3 2 6 6 C 1.38857 * 111.00324 * 183.18891 * 5 4 3 7 7 C 1.39566 * 119.84600 * 180.02562 * 6 5 4 8 8 C 1.36339 * 120.16065 * 180.02562 * 7 6 5 9 9 C 1.40885 * 119.83801 * 359.97438 * 8 7 6 10 10 C 1.41138 * 120.15443 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99623 * 334.75244 * 10 9 8 12 12 C 1.39860 * 119.99795 * 154.74971 * 10 9 8 13 13 N 1.30902 * 120.00186 * 334.44660 * 12 10 9 14 14 Si 1.86801 * 119.99819 * 154.16773 * 12 10 9 15 15 H 1.48504 * 109.47314 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46906 * 120.00033 * 14 12 10 17 17 H 1.48500 * 109.47462 * 240.00323 * 14 12 10 18 18 C 1.40885 * 119.68950 * 0.25800 * 9 8 7 19 19 C 1.36344 * 119.83276 * 359.45979 * 18 9 8 20 20 C 1.46964 * 110.87654 * 59.32343 * 5 4 3 21 21 C 1.46952 * 110.99661 * 123.80170 * 2 1 3 22 22 H 1.09006 * 109.46805 * 60.00289 * 1 2 3 23 23 H 1.09002 * 109.46981 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47210 * 299.99850 * 1 2 3 25 25 H 1.08997 * 109.48901 * 63.22419 * 3 2 1 26 26 H 1.09001 * 109.51013 * 303.16660 * 3 2 1 27 27 H 1.09003 * 109.48918 * 181.63461 * 4 3 2 28 28 H 1.09000 * 109.50984 * 61.57755 * 4 3 2 29 29 H 1.08006 * 119.91540 * 0.02562 * 7 6 5 30 30 H 1.08007 * 120.07755 * 180.02562 * 8 7 6 31 31 H 0.96996 * 119.99870 * 353.96212 * 13 12 10 32 32 H 1.07998 * 120.08239 * 179.72246 * 18 9 8 33 33 H 1.08005 * 119.91378 * 180.27755 * 19 18 9 34 34 H 1.09000 * 109.48642 * 60.64669 * 20 5 4 35 35 H 1.08999 * 109.48328 * 180.71307 * 20 5 4 36 36 H 1.09004 * 109.49066 * 296.77164 * 21 2 1 37 37 H 1.08995 * 109.49736 * 56.84461 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.4387 0.5658 1.0599 7 6 6.1332 -0.1080 2.0656 8 6 7.4966 -0.1118 2.0722 9 6 8.2043 0.5663 1.0601 10 6 9.6157 0.5671 1.0608 11 1 10.1553 0.4284 1.9860 12 6 10.3154 0.7476 -0.1367 13 7 9.7576 0.4239 -1.2758 14 14 12.0429 1.4578 -0.1111 15 1 12.4397 1.7441 1.2910 16 1 12.9895 0.4784 -0.7027 17 1 12.0732 2.7148 -0.9011 18 6 7.4966 1.2485 0.0509 19 6 6.1332 1.2389 0.0537 20 6 3.5234 -0.8062 1.0598 21 6 1.9956 -0.7632 1.1400 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6938 1.8773 0.9173 26 1 1.6014 1.9132 -0.8600 27 1 3.9178 2.3448 -0.0512 28 1 3.8257 0.8481 -1.0106 29 1 5.5892 -0.6278 2.8405 30 1 8.0327 -0.6341 2.8509 31 1 8.8959 -0.0214 -1.2847 32 1 8.0327 1.7741 -0.7254 33 1 5.5894 1.7577 -0.7220 34 1 3.8254 -1.3115 0.1424 35 1 3.9178 -1.3470 1.9200 36 1 1.6938 -0.2820 2.0704 37 1 1.6013 -1.7790 1.1110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082713134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:29 Heat of formation + Delta-G solvation = 31.457084 kcal Electronic energy + Delta-G solvation = -17684.916872 eV Core-core repulsion = 15040.601085 eV Total energy + Delta-G solvation = -2644.315787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57938 -37.55523 -35.27102 -33.17449 -31.10870 -29.59929 -29.30378 -27.40258 -24.62568 -23.75293 -23.25961 -20.74628 -20.50167 -19.34988 -17.89244 -16.59305 -15.09343 -14.98263 -14.83362 -14.72510 -14.27660 -14.14311 -13.76206 -13.28782 -12.76532 -12.59805 -12.25052 -12.09042 -12.02191 -11.50395 -11.31297 -11.13171 -10.97634 -10.93397 -10.76428 -10.48513 -10.41692 -9.61445 -9.50062 -9.02252 -8.60872 -8.31527 -7.77779 -7.20282 -6.89266 -4.32300 2.71409 2.88333 3.17102 3.26550 3.36147 3.94735 4.03806 4.38889 4.65832 5.03998 5.04728 5.25926 5.34939 5.46739 5.55633 5.57079 5.59897 5.71213 5.73809 5.88231 6.05544 6.12115 6.17904 6.20018 6.29073 6.69210 6.73402 6.98700 7.03294 7.06398 7.29491 7.30735 7.44276 7.78422 7.83488 8.03358 8.10899 8.22573 8.39079 8.80616 8.93332 10.08249 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.054581 B = 0.004815 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.871491 B = 5814.193746 C = 6083.277665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.057 3.943 4 C 0.058 3.942 5 N -0.476 5.476 6 C -0.044 4.044 7 C -0.086 4.086 8 C -0.213 4.213 9 C 0.087 3.913 10 C -0.523 4.523 11 H 0.074 0.926 12 C 0.038 3.962 13 N -0.801 5.801 14 Si 1.069 2.931 15 H -0.277 1.277 16 H -0.279 1.279 17 H -0.275 1.275 18 C -0.203 4.203 19 C -0.116 4.116 20 C 0.057 3.943 21 C 0.058 3.942 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.299 0.701 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.701 -0.114 1.348 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.070 4.070 5 N -0.194 5.194 6 C -0.139 4.139 7 C -0.106 4.106 8 C -0.233 4.233 9 C 0.084 3.916 10 C -0.551 4.551 11 H 0.093 0.907 12 C -0.183 4.183 13 N -0.425 5.425 14 Si 0.893 3.107 15 H -0.202 1.202 16 H -0.205 1.205 17 H -0.200 1.200 18 C -0.223 4.223 19 C -0.136 4.136 20 C -0.070 4.070 21 C -0.070 4.070 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.526 0.348 0.322 10.536 hybrid contribution -1.375 -0.469 1.033 1.783 sum -11.900 -0.121 1.355 11.978 Atomic orbital electron populations 1.22333 0.87654 1.01794 1.00434 1.62150 1.07375 1.14338 1.43248 1.22217 0.95354 0.88914 1.00585 1.22173 0.92899 0.99170 0.92748 1.59427 1.07164 1.12246 1.40582 1.18131 0.85999 1.10224 0.99557 1.19997 0.94005 1.00045 0.96558 1.20612 0.92943 1.06413 1.03325 1.17679 0.93484 0.89106 0.91333 1.20514 0.91787 1.45678 0.97113 0.90741 1.26977 1.06332 0.93436 0.91538 1.70428 1.18680 1.24733 1.28641 0.83601 0.73071 0.77352 0.76696 1.20167 1.20465 1.20000 1.20790 0.92982 1.05245 1.03313 1.20589 0.94847 1.01685 0.96508 1.22273 0.92902 0.90463 1.01324 1.22206 0.95411 0.97875 0.91556 0.91539 0.91571 0.95814 0.94215 0.90608 0.90144 0.93723 0.89015 0.88757 0.88786 0.87679 0.88651 0.94075 0.90350 0.94248 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 60.07 0.58 0.85 16 2 N -0.55 -7.42 4.97 -242.75 -1.21 -8.62 16 3 C 0.06 0.79 5.62 -3.77 -0.02 0.77 16 4 C 0.06 0.97 4.28 -3.77 -0.02 0.96 16 5 N -0.48 -8.97 4.73 -170.79 -0.81 -9.78 16 6 C -0.04 -0.97 5.65 -83.69 -0.47 -1.44 16 7 C -0.09 -1.95 9.11 -39.77 -0.36 -2.31 16 8 C -0.21 -5.26 9.74 -39.26 -0.38 -5.65 16 9 C 0.09 2.32 5.30 -106.79 -0.57 1.76 16 10 C -0.52 -14.04 8.96 -37.88 -0.34 -14.38 16 11 H 0.07 1.96 7.96 -52.48 -0.42 1.54 16 12 C 0.04 0.98 4.93 -17.34 -0.09 0.90 16 13 N -0.80 -21.51 12.31 55.54 0.68 -20.82 16 14 Si 1.07 21.86 30.00 -169.99 -5.10 16.76 16 15 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 C -0.20 -5.24 7.90 -39.26 -0.31 -5.55 16 19 C -0.12 -2.69 8.73 -39.77 -0.35 -3.04 16 20 C 0.06 0.95 5.37 -3.76 -0.02 0.93 16 21 C 0.06 0.79 5.62 -3.77 -0.02 0.77 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.34 7.14 -51.93 -0.37 0.97 16 28 H 0.04 0.80 7.56 -51.93 -0.39 0.41 16 29 H 0.09 1.87 7.16 -52.48 -0.38 1.49 16 30 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 31 H 0.30 8.25 6.71 -40.82 -0.27 7.98 16 32 H 0.11 2.80 6.49 -52.49 -0.34 2.46 16 33 H 0.10 2.01 5.77 -52.48 -0.30 1.71 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.28 6.78 -51.93 -0.35 0.93 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -27.92 292.89 -9.81 -37.73 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.43 Total: 5.75 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -2.37 Total: -25.43 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -1.33 Total: -39.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.10 Total: 16.76 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.92 -9.81 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082713134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.188 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds