Wall clock time and date at job start Mon Mar 30 2020 04:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46952 * 110.99861 * 2 1 4 4 C 1.53052 * 109.36151 * 183.18718 * 3 2 1 5 5 N 1.46955 * 109.36610 * 301.59661 * 4 3 2 6 6 C 1.38857 * 111.00324 * 183.18891 * 5 4 3 7 7 C 1.39566 * 119.84600 * 180.02562 * 6 5 4 8 8 C 1.36339 * 120.16065 * 180.02562 * 7 6 5 9 9 C 1.40885 * 119.83801 * 359.97438 * 8 7 6 10 10 C 1.41138 * 120.15443 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99623 * 334.75244 * 10 9 8 12 12 C 1.39860 * 119.99795 * 154.74971 * 10 9 8 13 13 N 1.30902 * 120.00186 * 334.44660 * 12 10 9 14 14 Si 1.86801 * 119.99819 * 154.16773 * 12 10 9 15 15 H 1.48504 * 109.47314 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46906 * 120.00033 * 14 12 10 17 17 H 1.48500 * 109.47462 * 240.00323 * 14 12 10 18 18 C 1.40885 * 119.68950 * 0.25800 * 9 8 7 19 19 C 1.36344 * 119.83276 * 359.45979 * 18 9 8 20 20 C 1.46964 * 110.87654 * 59.32343 * 5 4 3 21 21 C 1.46952 * 110.99661 * 123.80170 * 2 1 3 22 22 H 1.09006 * 109.46805 * 60.00289 * 1 2 3 23 23 H 1.09002 * 109.46981 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47210 * 299.99850 * 1 2 3 25 25 H 1.08997 * 109.48901 * 63.22419 * 3 2 1 26 26 H 1.09001 * 109.51013 * 303.16660 * 3 2 1 27 27 H 1.09003 * 109.48918 * 181.63461 * 4 3 2 28 28 H 1.09000 * 109.50984 * 61.57755 * 4 3 2 29 29 H 1.08006 * 119.91540 * 0.02562 * 7 6 5 30 30 H 1.08007 * 120.07755 * 180.02562 * 8 7 6 31 31 H 0.96996 * 119.99870 * 353.96212 * 13 12 10 32 32 H 1.07998 * 120.08239 * 179.72246 * 18 9 8 33 33 H 1.08005 * 119.91378 * 180.27755 * 19 18 9 34 34 H 1.09000 * 109.48642 * 60.64669 * 20 5 4 35 35 H 1.08999 * 109.48328 * 180.71307 * 20 5 4 36 36 H 1.09004 * 109.49066 * 296.77164 * 21 2 1 37 37 H 1.08995 * 109.49736 * 56.84461 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.4387 0.5658 1.0599 7 6 6.1332 -0.1080 2.0656 8 6 7.4966 -0.1118 2.0722 9 6 8.2043 0.5663 1.0601 10 6 9.6157 0.5671 1.0608 11 1 10.1553 0.4284 1.9860 12 6 10.3154 0.7476 -0.1367 13 7 9.7576 0.4239 -1.2758 14 14 12.0429 1.4578 -0.1111 15 1 12.4397 1.7441 1.2910 16 1 12.9895 0.4784 -0.7027 17 1 12.0732 2.7148 -0.9011 18 6 7.4966 1.2485 0.0509 19 6 6.1332 1.2389 0.0537 20 6 3.5234 -0.8062 1.0598 21 6 1.9956 -0.7632 1.1400 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6938 1.8773 0.9173 26 1 1.6014 1.9132 -0.8600 27 1 3.9178 2.3448 -0.0512 28 1 3.8257 0.8481 -1.0106 29 1 5.5892 -0.6278 2.8405 30 1 8.0327 -0.6341 2.8509 31 1 8.8959 -0.0214 -1.2847 32 1 8.0327 1.7741 -0.7254 33 1 5.5894 1.7577 -0.7220 34 1 3.8254 -1.3115 0.1424 35 1 3.9178 -1.3470 1.9200 36 1 1.6938 -0.2820 2.0704 37 1 1.6013 -1.7790 1.1110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082713134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:28 Heat of formation + Delta-G solvation = 14.163922 kcal Electronic energy + Delta-G solvation = -17685.666759 eV Core-core repulsion = 15040.601085 eV Total energy + Delta-G solvation = -2645.065675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07766 -39.14857 -36.81338 -34.93906 -32.51294 -31.27592 -30.98072 -28.86327 -26.25067 -25.11586 -24.60859 -22.41298 -22.26596 -20.75224 -19.81200 -18.11672 -16.58838 -16.44549 -16.14084 -16.01518 -15.71313 -15.62513 -15.31495 -14.84624 -14.49854 -14.23621 -13.87746 -13.36927 -13.28312 -13.09513 -12.76523 -12.72728 -12.53470 -12.29410 -12.04904 -11.97475 -11.81047 -11.46342 -11.33680 -10.88517 -10.33587 -9.71455 -9.35097 -9.19750 -8.71115 -6.33904 0.84033 0.92969 1.50327 1.62677 1.79461 2.33582 2.61076 2.94703 3.04004 3.54091 3.86748 4.02020 4.07215 4.23048 4.24910 4.33593 4.35599 4.52920 4.61651 4.65074 4.74320 4.75613 4.85170 4.88993 4.94837 5.00691 5.03720 5.13221 5.41222 5.43012 5.58185 5.78417 5.82659 5.99294 6.05732 6.18452 6.26586 6.34739 6.52394 6.85345 6.98261 8.05444 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.054581 B = 0.004815 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.871491 B = 5814.193746 C = 6083.277665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.562 5.562 3 C 0.065 3.935 4 C 0.056 3.944 5 N -0.481 5.481 6 C -0.024 4.024 7 C -0.091 4.091 8 C -0.222 4.222 9 C 0.056 3.944 10 C -0.560 4.560 11 H 0.069 0.931 12 C 0.003 3.997 13 N -0.823 5.823 14 Si 1.121 2.879 15 H -0.264 1.264 16 H -0.266 1.266 17 H -0.267 1.267 18 C -0.217 4.217 19 C -0.125 4.125 20 C 0.057 3.943 21 C 0.065 3.935 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.031 0.969 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.281 0.719 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.024 0.976 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 -0.068 1.771 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.287 5.287 3 C -0.063 4.063 4 C -0.072 4.072 5 N -0.198 5.198 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.242 4.242 9 C 0.053 3.947 10 C -0.588 4.588 11 H 0.088 0.912 12 C -0.212 4.212 13 N -0.447 5.447 14 Si 0.938 3.062 15 H -0.189 1.189 16 H -0.191 1.191 17 H -0.192 1.192 18 C -0.237 4.237 19 C -0.145 4.145 20 C -0.069 4.069 21 C -0.063 4.063 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.522 0.382 0.752 12.550 hybrid contribution -1.036 -0.518 0.955 1.502 sum -13.558 -0.136 1.708 13.666 Atomic orbital electron populations 1.22396 0.85336 1.02979 1.01317 1.62157 1.09483 1.13921 1.43165 1.22148 0.92799 0.89648 1.01702 1.22247 0.95341 0.98388 0.91222 1.59376 1.04887 1.13944 1.41630 1.18409 0.87953 1.07571 0.98049 1.20270 0.93432 1.00028 0.97320 1.20818 0.94049 1.06277 1.03084 1.17992 0.94069 0.90155 0.92479 1.20694 0.92332 1.48292 0.97514 0.91233 1.28395 1.09609 0.92500 0.90696 1.70549 1.18307 1.26583 1.29245 0.82971 0.68670 0.77084 0.77497 1.18864 1.19104 1.19208 1.20737 0.94013 1.05851 1.03125 1.20816 0.94123 1.02160 0.97430 1.22329 0.95350 0.88606 1.00645 1.22152 0.92845 0.99411 0.91899 0.90403 0.90316 0.95137 0.94003 0.88456 0.90418 0.95028 0.86259 0.88125 0.90665 0.89477 0.86797 0.95714 0.90011 0.93899 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.60 127.69 1.23 1.69 16 2 N -0.56 -13.40 4.97 -921.94 -4.58 -17.98 16 3 C 0.07 1.61 5.62 86.31 0.49 2.09 16 4 C 0.06 1.77 4.28 86.31 0.37 2.14 16 5 N -0.48 -17.28 4.73 -694.26 -3.29 -20.57 16 6 C -0.02 -1.02 5.65 38.67 0.22 -0.81 16 7 C -0.09 -4.03 9.11 22.15 0.20 -3.83 16 8 C -0.22 -11.13 9.74 22.47 0.22 -10.91 16 9 C 0.06 3.08 5.30 -21.27 -0.11 2.97 16 10 C -0.56 -31.18 8.96 23.37 0.21 -30.97 16 11 H 0.07 3.79 7.96 -2.91 -0.02 3.77 16 12 C 0.00 0.16 4.93 85.22 0.42 0.58 16 13 N -0.82 -45.82 12.31 21.81 0.27 -45.55 16 14 Si 1.12 44.48 30.00 68.60 2.06 46.54 16 15 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 16 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 18 C -0.22 -11.60 7.90 22.48 0.18 -11.42 16 19 C -0.12 -5.86 8.73 22.15 0.19 -5.66 16 20 C 0.06 1.79 5.37 86.31 0.46 2.25 16 21 C 0.07 1.57 5.62 86.31 0.49 2.06 16 22 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.08 1.14 8.13 -2.39 -0.02 1.13 16 24 H 0.03 0.48 8.14 -2.39 -0.02 0.47 16 25 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.49 7.14 -2.39 -0.02 2.47 16 28 H 0.03 1.09 7.56 -2.39 -0.02 1.07 16 29 H 0.12 4.60 7.16 -2.91 -0.02 4.58 16 30 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.28 16.36 6.71 -92.71 -0.62 15.74 16 32 H 0.09 4.89 6.49 -2.91 -0.02 4.87 16 33 H 0.11 4.82 5.77 -2.91 -0.02 4.81 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 2.48 6.78 -2.39 -0.02 2.46 16 36 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.10 1.95 8.13 -2.39 -0.02 1.93 16 Total: -1.00 -61.44 292.89 0.21 -61.24 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 1.19 Total: 26.13 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 4.56 Total: -49.82 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -7.60 Total: -84.09 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.06 Total: 46.54 kcal Total: -61.44 0.21 -61.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082713134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.401 kcal (2) G-P(sol) polarization free energy of solvation -61.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds