Wall clock time and date at job start Mon Mar 30 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08990 * 108.96419 * 2 1 4 4 C 1.51954 * 108.90711 * 241.35036 * 2 1 3 5 5 N 1.46936 * 110.43294 * 176.58662 * 4 2 1 6 6 C 1.46891 * 111.00036 * 213.48128 * 5 4 2 7 7 C 1.39737 * 110.57127 * 89.82620 * 5 4 2 8 8 C 1.39096 * 119.80878 * 106.43821 * 7 5 4 9 9 C 1.38084 * 119.78748 * 182.23654 * 8 7 5 10 10 C 1.38305 * 120.31347 * 359.97438 * 9 8 7 11 11 C 1.38434 * 120.03764 * 359.53202 * 10 9 8 12 12 C 1.37807 * 119.69976 * 0.15106 * 11 10 9 13 13 C 1.51414 * 120.51454 * 180.83887 * 12 11 10 14 14 N 1.45977 * 109.03312 * 118.91017 * 2 1 3 15 15 C 1.36934 * 119.86803 * 3.50122 * 14 2 1 16 16 H 1.07999 * 120.00232 * 34.67410 * 15 14 2 17 17 C 1.38816 * 119.99831 * 214.68253 * 15 14 2 18 18 N 1.31614 * 119.99925 * 24.82583 * 17 15 14 19 19 Si 1.86800 * 119.99741 * 204.82399 * 17 15 14 20 20 H 1.48498 * 109.47167 * 89.99903 * 19 17 15 21 21 H 1.48504 * 109.47244 * 329.99498 * 19 17 15 22 22 H 1.48502 * 109.46905 * 210.00198 * 19 17 15 23 23 H 1.08996 * 109.46838 * 301.09212 * 1 2 3 24 24 H 1.09002 * 109.46647 * 61.08969 * 1 2 3 25 25 H 1.08995 * 109.47168 * 181.08831 * 1 2 3 26 26 H 1.09001 * 109.38595 * 56.23193 * 4 2 1 27 27 H 1.09003 * 109.04355 * 296.72482 * 4 2 1 28 28 H 1.09006 * 109.46766 * 292.64400 * 6 5 4 29 29 H 1.09002 * 109.47389 * 52.63937 * 6 5 4 30 30 H 1.09000 * 109.47271 * 172.64346 * 6 5 4 31 31 H 1.07998 * 120.10703 * 2.20974 * 8 7 5 32 32 H 1.08008 * 119.84403 * 179.97438 * 9 8 7 33 33 H 1.08001 * 119.98669 * 179.56096 * 10 9 8 34 34 H 1.07997 * 120.15154 * 180.14560 * 11 10 9 35 35 H 1.09002 * 109.71314 * 126.38993 * 13 12 11 36 36 H 1.08997 * 109.74462 * 5.78686 * 13 12 11 37 37 H 0.96993 * 120.00298 * 5.67050 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8843 1.0307 0.0000 4 6 2.0225 -0.6892 -1.2616 5 7 3.4890 -0.6364 -1.3359 6 6 3.9420 -0.5307 -2.7292 7 6 4.0529 -1.7508 -0.7090 8 6 4.6143 -2.7657 -1.4768 9 6 5.1298 -3.8880 -0.8591 10 6 5.0907 -4.0067 0.5183 11 6 4.5418 -2.9938 1.2859 12 6 4.0330 -1.8704 0.6709 13 6 3.4456 -0.7431 1.4935 14 7 2.0062 -0.6671 1.2080 15 6 1.1081 -1.2291 2.0756 16 1 0.2057 -1.6865 1.6976 17 6 1.3575 -1.2108 3.4411 18 7 2.1388 -0.2847 3.9549 19 14 0.5843 -2.5007 4.5491 20 1 1.4900 -3.6731 4.6509 21 1 -0.7174 -2.9290 3.9767 22 1 0.3653 -1.9254 5.9005 23 1 -0.3633 0.5307 0.8800 24 1 -0.3633 0.4968 -0.8996 25 1 -0.3633 -1.0274 0.0195 26 1 1.5990 -0.1920 -2.1343 27 1 1.6994 -1.7302 -1.2474 28 1 3.7088 -1.4549 -3.2581 29 1 3.4346 0.3033 -3.2140 30 1 5.0187 -0.3623 -2.7494 31 1 4.6466 -2.6765 -2.5526 32 1 5.5656 -4.6768 -1.4544 33 1 5.4890 -4.8899 0.9955 34 1 4.5125 -3.0835 2.3617 35 1 3.9244 0.1979 1.2226 36 1 3.5999 -0.9419 2.5540 37 1 2.4739 0.4327 3.3947 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083248526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:19 Heat of formation + Delta-G solvation = 65.270424 kcal Electronic energy + Delta-G solvation = -18785.790765 eV Core-core repulsion = 16142.941235 eV Total energy + Delta-G solvation = -2642.849531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.85789 -36.72653 -35.69464 -32.37254 -31.52144 -29.54670 -28.34238 -26.87702 -25.51722 -23.81782 -23.15171 -21.11247 -19.98477 -19.56206 -16.97252 -16.73110 -15.35873 -14.98087 -14.78399 -14.49459 -13.90803 -13.58770 -13.40000 -13.32545 -12.78312 -12.37486 -12.22760 -11.84601 -11.71954 -11.29006 -11.18287 -10.86770 -10.70946 -10.51229 -10.47086 -10.33188 -10.13141 -10.05249 -9.25832 -8.82360 -8.36392 -8.18508 -7.40954 -6.81394 -6.01757 -3.29971 1.89262 1.99840 3.51201 3.52155 3.68735 4.09504 4.44826 4.61219 5.18240 5.30337 5.32354 5.39372 5.48129 5.51612 5.61345 5.84122 5.86270 5.93318 6.01038 6.02892 6.13772 6.19242 6.34415 6.37563 6.48558 6.58186 6.65453 6.82784 6.97239 7.00985 7.04767 7.15656 7.26878 7.37474 7.62324 7.88853 8.11991 8.60504 9.15883 9.84816 10.31324 11.19817 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.010294 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.281304 B = 2719.371438 C = 3566.552928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.176 3.824 3 H 0.031 0.969 4 C 0.046 3.954 5 N -0.493 5.493 6 C 0.024 3.976 7 C 0.104 3.896 8 C -0.177 4.177 9 C -0.123 4.123 10 C -0.142 4.142 11 C -0.094 4.094 12 C -0.076 4.076 13 C 0.177 3.823 14 N -0.581 5.581 15 C -0.345 4.345 16 H 0.055 0.945 17 C -0.019 4.019 18 N -0.908 5.908 19 Si 1.061 2.939 20 H -0.292 1.292 21 H -0.292 1.292 22 H -0.290 1.290 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -2.960 -10.386 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 H 0.049 0.951 4 C -0.082 4.082 5 N -0.210 5.210 6 C -0.124 4.124 7 C 0.008 3.992 8 C -0.197 4.197 9 C -0.142 4.142 10 C -0.161 4.161 11 C -0.113 4.113 12 C -0.080 4.080 13 C 0.051 3.949 14 N -0.302 5.302 15 C -0.474 4.474 16 H 0.073 0.927 17 C -0.222 4.222 18 N -0.547 5.547 19 Si 0.891 3.109 20 H -0.220 1.220 21 H -0.219 1.219 22 H -0.216 1.216 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.248 -3.003 -8.584 9.656 hybrid contribution -0.106 -0.317 -2.216 2.241 sum 3.142 -3.320 -10.800 11.727 Atomic orbital electron populations 1.21777 0.95428 1.01656 1.00071 1.20035 0.92812 0.94008 0.86298 0.95127 1.22694 0.84520 1.00632 1.00308 1.59161 1.08706 1.38258 1.14838 1.22522 1.01252 1.00236 0.88398 1.18711 0.98485 0.88887 0.93163 1.21381 1.04875 0.94297 0.99170 1.20749 1.01275 0.97449 0.94702 1.21058 1.02047 0.99083 0.93877 1.20961 0.97392 0.93081 0.99899 1.20845 0.95947 0.98373 0.92857 1.20191 0.83708 0.92207 0.98792 1.43842 1.00617 1.63919 1.21809 1.19901 1.04420 1.34408 0.88688 0.92748 1.25816 1.00472 1.00775 0.95145 1.70728 1.35066 1.10717 1.38212 0.83567 0.75567 0.75817 0.75903 1.21986 1.21877 1.21599 0.91681 0.94550 0.92711 0.91728 0.93922 0.95076 0.91385 0.91414 0.86594 0.87232 0.86923 0.85996 0.94001 0.89139 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.03 37.16 0.30 -2.27 16 2 C 0.18 3.74 3.32 -68.74 -0.23 3.51 16 3 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.05 0.85 4.79 -4.34 -0.02 0.83 16 5 N -0.49 -9.00 4.38 -179.60 -0.79 -9.79 16 6 C 0.02 0.33 8.46 60.06 0.51 0.84 16 7 C 0.10 2.04 4.99 -83.83 -0.42 1.62 16 8 C -0.18 -3.01 9.01 -39.32 -0.35 -3.37 16 9 C -0.12 -1.98 10.02 -39.61 -0.40 -2.38 16 10 C -0.14 -2.43 10.06 -39.48 -0.40 -2.83 16 11 C -0.09 -1.88 9.71 -39.67 -0.38 -2.27 16 12 C -0.08 -1.64 5.45 -104.32 -0.57 -2.21 16 13 C 0.18 4.25 4.69 -4.60 -0.02 4.23 16 14 N -0.58 -14.35 2.46 -167.25 -0.41 -14.76 16 15 C -0.34 -9.29 8.14 -15.06 -0.12 -9.41 16 16 H 0.05 1.49 6.34 -52.49 -0.33 1.16 16 17 C -0.02 -0.53 4.78 -17.43 -0.08 -0.61 16 18 N -0.91 -26.45 12.22 55.49 0.68 -25.77 16 19 Si 1.06 25.06 29.99 -169.99 -5.10 19.96 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H 0.06 1.38 7.82 -51.93 -0.41 0.97 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 1.11 6.92 -51.93 -0.36 0.75 16 26 H 0.06 1.02 7.55 -51.93 -0.39 0.63 16 27 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 28 H 0.03 0.41 6.34 -51.93 -0.33 0.08 16 29 H 0.07 0.83 7.86 -51.93 -0.41 0.43 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.12 1.70 5.76 -52.49 -0.30 1.40 16 32 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.12 2.45 8.00 -52.49 -0.42 2.03 16 35 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 2.39 5.36 -51.93 -0.28 2.11 16 37 H 0.27 7.99 7.11 -40.82 -0.29 7.70 16 LS Contribution 287.30 15.07 4.33 4.33 Total: -1.00 -29.30 287.30 -8.73 -38.04 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.25 Total: 2.30 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.19 Total: -14.31 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.52 Total: -50.32 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.10 Total: 19.96 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.30 -8.73 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083248526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.307 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds