Wall clock time and date at job start Mon Mar 30 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08990 * 108.96419 * 2 1 4 4 C 1.51954 * 108.90711 * 241.35036 * 2 1 3 5 5 N 1.46936 * 110.43294 * 176.58662 * 4 2 1 6 6 C 1.46891 * 111.00036 * 213.48128 * 5 4 2 7 7 C 1.39737 * 110.57127 * 89.82620 * 5 4 2 8 8 C 1.39096 * 119.80878 * 106.43821 * 7 5 4 9 9 C 1.38084 * 119.78748 * 182.23654 * 8 7 5 10 10 C 1.38305 * 120.31347 * 359.97438 * 9 8 7 11 11 C 1.38434 * 120.03764 * 359.53202 * 10 9 8 12 12 C 1.37807 * 119.69976 * 0.15106 * 11 10 9 13 13 C 1.51414 * 120.51454 * 180.83887 * 12 11 10 14 14 N 1.45977 * 109.03312 * 118.91017 * 2 1 3 15 15 C 1.36934 * 119.86803 * 3.50122 * 14 2 1 16 16 H 1.07999 * 120.00232 * 34.67410 * 15 14 2 17 17 C 1.38816 * 119.99831 * 214.68253 * 15 14 2 18 18 N 1.31614 * 119.99925 * 24.82583 * 17 15 14 19 19 Si 1.86800 * 119.99741 * 204.82399 * 17 15 14 20 20 H 1.48498 * 109.47167 * 89.99903 * 19 17 15 21 21 H 1.48504 * 109.47244 * 329.99498 * 19 17 15 22 22 H 1.48502 * 109.46905 * 210.00198 * 19 17 15 23 23 H 1.08996 * 109.46838 * 301.09212 * 1 2 3 24 24 H 1.09002 * 109.46647 * 61.08969 * 1 2 3 25 25 H 1.08995 * 109.47168 * 181.08831 * 1 2 3 26 26 H 1.09001 * 109.38595 * 56.23193 * 4 2 1 27 27 H 1.09003 * 109.04355 * 296.72482 * 4 2 1 28 28 H 1.09006 * 109.46766 * 292.64400 * 6 5 4 29 29 H 1.09002 * 109.47389 * 52.63937 * 6 5 4 30 30 H 1.09000 * 109.47271 * 172.64346 * 6 5 4 31 31 H 1.07998 * 120.10703 * 2.20974 * 8 7 5 32 32 H 1.08008 * 119.84403 * 179.97438 * 9 8 7 33 33 H 1.08001 * 119.98669 * 179.56096 * 10 9 8 34 34 H 1.07997 * 120.15154 * 180.14560 * 11 10 9 35 35 H 1.09002 * 109.71314 * 126.38993 * 13 12 11 36 36 H 1.08997 * 109.74462 * 5.78686 * 13 12 11 37 37 H 0.96993 * 120.00298 * 5.67050 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8843 1.0307 0.0000 4 6 2.0225 -0.6892 -1.2616 5 7 3.4890 -0.6364 -1.3359 6 6 3.9420 -0.5307 -2.7292 7 6 4.0529 -1.7508 -0.7090 8 6 4.6143 -2.7657 -1.4768 9 6 5.1298 -3.8880 -0.8591 10 6 5.0907 -4.0067 0.5183 11 6 4.5418 -2.9938 1.2859 12 6 4.0330 -1.8704 0.6709 13 6 3.4456 -0.7431 1.4935 14 7 2.0062 -0.6671 1.2080 15 6 1.1081 -1.2291 2.0756 16 1 0.2057 -1.6865 1.6976 17 6 1.3575 -1.2108 3.4411 18 7 2.1388 -0.2847 3.9549 19 14 0.5843 -2.5007 4.5491 20 1 1.4900 -3.6731 4.6509 21 1 -0.7174 -2.9290 3.9767 22 1 0.3653 -1.9254 5.9005 23 1 -0.3633 0.5307 0.8800 24 1 -0.3633 0.4968 -0.8996 25 1 -0.3633 -1.0274 0.0195 26 1 1.5990 -0.1920 -2.1343 27 1 1.6994 -1.7302 -1.2474 28 1 3.7088 -1.4549 -3.2581 29 1 3.4346 0.3033 -3.2140 30 1 5.0187 -0.3623 -2.7494 31 1 4.6466 -2.6765 -2.5526 32 1 5.5656 -4.6768 -1.4544 33 1 5.4890 -4.8899 0.9955 34 1 4.5125 -3.0835 2.3617 35 1 3.9244 0.1979 1.2226 36 1 3.5999 -0.9419 2.5540 37 1 2.4739 0.4327 3.3947 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083248526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:19 Heat of formation + Delta-G solvation = 48.230000 kcal Electronic energy + Delta-G solvation = -18786.529694 eV Core-core repulsion = 16142.941235 eV Total energy + Delta-G solvation = -2643.588459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.31654 -38.31529 -37.28743 -34.16754 -33.19216 -31.09509 -29.90965 -28.32886 -27.22676 -25.28033 -24.98207 -22.58431 -21.54657 -21.24863 -18.84874 -18.24966 -16.92639 -16.57934 -16.25494 -15.93496 -15.50812 -15.37420 -15.12150 -14.87611 -14.21531 -13.86016 -13.80647 -13.40156 -12.92467 -12.87892 -12.73890 -12.54581 -12.39490 -12.22740 -12.06115 -11.96055 -11.90569 -11.77816 -11.21582 -10.45522 -10.19374 -9.65360 -8.84873 -8.80092 -8.14142 -5.42788 0.48254 0.56283 1.56605 1.63284 1.80340 2.62915 2.74134 3.05384 3.29071 3.57088 3.98345 4.09314 4.14883 4.21963 4.25057 4.37520 4.44890 4.50544 4.59755 4.62912 4.68265 4.74879 4.86376 4.90406 4.92296 4.95576 5.16261 5.20278 5.31077 5.41359 5.50769 5.61148 5.75869 5.94035 5.99191 6.19585 6.42507 6.50986 7.13932 7.81569 8.28728 9.02111 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.010294 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.281304 B = 2719.371438 C = 3566.552928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.165 3.835 3 H 0.018 0.982 4 C 0.061 3.939 5 N -0.513 5.513 6 C 0.023 3.977 7 C 0.093 3.907 8 C -0.172 4.172 9 C -0.111 4.111 10 C -0.140 4.140 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.189 3.811 14 N -0.596 5.596 15 C -0.338 4.338 16 H 0.049 0.951 17 C -0.070 4.070 18 N -0.935 5.935 19 Si 1.106 2.894 20 H -0.286 1.286 21 H -0.274 1.274 22 H -0.294 1.294 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.100 0.900 27 H 0.024 0.976 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.025 0.975 36 H 0.056 0.944 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -4.719 -13.357 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 H 0.036 0.964 4 C -0.067 4.067 5 N -0.230 5.230 6 C -0.124 4.124 7 C -0.004 4.004 8 C -0.193 4.193 9 C -0.130 4.130 10 C -0.158 4.158 11 C -0.135 4.135 12 C -0.114 4.114 13 C 0.063 3.937 14 N -0.319 5.319 15 C -0.468 4.468 16 H 0.066 0.934 17 C -0.267 4.267 18 N -0.576 5.576 19 Si 0.932 3.068 20 H -0.213 1.213 21 H -0.199 1.199 22 H -0.220 1.220 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.118 0.882 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.123 0.877 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.514 -4.763 -11.600 13.023 hybrid contribution -0.121 0.260 -1.394 1.423 sum 3.393 -4.503 -12.994 14.165 Atomic orbital electron populations 1.21668 0.94218 1.01085 1.00897 1.20275 0.93963 0.93398 0.86515 0.96449 1.22452 0.85209 0.99334 0.99656 1.59060 1.08240 1.38153 1.17505 1.22640 1.01904 1.01843 0.85969 1.18854 0.98949 0.90167 0.92452 1.21739 1.03457 0.93453 1.00613 1.21253 0.99374 0.97912 0.94415 1.21362 1.00981 0.98912 0.94588 1.20990 0.98880 0.94080 0.99573 1.20666 0.98534 0.98163 0.94045 1.19838 0.83775 0.92728 0.97323 1.44042 1.00639 1.64520 1.22666 1.20020 1.04414 1.33284 0.89098 0.93352 1.27010 1.00945 1.01855 0.96905 1.70842 1.37312 1.11534 1.37946 0.82961 0.75732 0.73897 0.74236 1.21323 1.19906 1.22016 0.94281 0.90403 0.93690 0.88158 0.95707 0.93451 0.89459 0.90696 0.83459 0.83008 0.84017 0.87750 0.95705 0.92558 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.67 8.03 71.99 0.58 -4.09 16 2 C 0.17 7.07 3.32 44.75 0.15 7.22 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C 0.06 2.15 4.79 85.95 0.41 2.56 16 5 N -0.51 -17.79 4.38 -722.14 -3.17 -20.96 16 6 C 0.02 0.56 8.46 127.69 1.08 1.64 16 7 C 0.09 3.49 4.99 38.16 0.19 3.68 16 8 C -0.17 -5.23 9.01 22.44 0.20 -5.03 16 9 C -0.11 -3.11 10.02 22.25 0.22 -2.88 16 10 C -0.14 -4.47 10.06 22.33 0.22 -4.24 16 11 C -0.12 -4.71 9.71 22.21 0.22 -4.49 16 12 C -0.11 -4.86 5.45 -19.67 -0.11 -4.96 16 13 C 0.19 9.64 4.69 85.78 0.40 10.04 16 14 N -0.60 -30.62 2.46 -683.05 -1.68 -32.30 16 15 C -0.34 -18.84 8.14 84.03 0.68 -18.15 16 16 H 0.05 2.72 6.34 -2.91 -0.02 2.70 16 17 C -0.07 -4.00 4.78 84.86 0.41 -3.60 16 18 N -0.93 -57.39 12.22 21.65 0.26 -57.12 16 19 Si 1.11 51.87 29.99 68.60 2.06 53.93 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H 0.04 1.67 7.82 -2.39 -0.02 1.65 16 24 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 25 H 0.04 1.80 6.92 -2.39 -0.02 1.78 16 26 H 0.10 2.80 7.55 -2.39 -0.02 2.78 16 27 H 0.02 0.96 7.74 -2.39 -0.02 0.94 16 28 H 0.05 1.00 6.34 -2.38 -0.02 0.99 16 29 H 0.09 1.77 7.86 -2.39 -0.02 1.75 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.15 3.52 5.76 -2.91 -0.02 3.50 16 32 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 33 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.10 4.45 8.00 -2.91 -0.02 4.43 16 35 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 3.22 5.36 -2.39 -0.01 3.21 16 37 H 0.25 16.01 7.11 -92.71 -0.66 15.35 16 Total: -1.00 -66.99 287.30 3.29 -63.70 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.16 Total: 15.07 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 4.66 Total: -22.32 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.59 Total: -110.38 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.06 Total: 53.93 kcal Total: -66.99 3.29 -63.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083248526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.928 kcal (2) G-P(sol) polarization free energy of solvation -66.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds