Wall clock time and date at job start Mon Mar 30 2020 04:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99798 * 2 1 4 4 C 1.39667 * 119.99506 * 179.97438 * 2 1 3 5 5 C 1.38941 * 120.14331 * 174.26569 * 4 2 1 6 6 C 1.37894 * 119.75192 * 179.97438 * 5 4 2 7 7 C 1.38742 * 120.45451 * 359.97438 * 6 5 4 8 8 C 1.37908 * 119.96570 * 0.15501 * 7 6 5 9 9 C 1.38613 * 119.79612 * 359.79331 * 8 7 6 10 10 C 1.50631 * 121.85001 * 179.76233 * 8 7 6 11 11 H 1.09008 * 109.13134 * 257.25602 * 10 8 7 12 12 C 1.50702 * 109.30438 * 137.77540 * 10 8 7 13 13 H 1.08005 * 119.99421 * 358.95804 * 12 10 8 14 14 C 1.37875 * 120.00120 * 178.96092 * 12 10 8 15 15 N 1.31516 * 120.00261 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99630 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47030 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47144 * 299.99325 * 16 14 12 19 19 H 1.48491 * 109.47498 * 59.99892 * 16 14 12 20 20 N 1.46632 * 110.49272 * 17.46010 * 10 8 7 21 21 C 1.47162 * 110.22792 * 307.44790 * 20 10 8 22 22 C 1.50753 * 118.40575 * 180.20558 * 7 6 5 23 23 H 1.09004 * 109.46774 * 270.00482 * 1 2 3 24 24 H 1.08998 * 109.46844 * 29.99891 * 1 2 3 25 25 H 1.08996 * 109.47297 * 150.00395 * 1 2 3 26 26 H 1.08993 * 109.46526 * 185.05231 * 3 2 1 27 27 H 1.08997 * 109.46968 * 305.05172 * 3 2 1 28 28 H 1.09000 * 109.47008 * 65.05248 * 3 2 1 29 29 H 1.08004 * 120.12285 * 359.95724 * 5 4 2 30 30 H 1.07996 * 119.76924 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.83301 * 180.13521 * 9 8 7 32 32 H 0.97001 * 119.99864 * 180.02562 * 15 14 12 33 33 H 1.00895 * 110.99688 * 70.85797 * 20 10 8 34 34 H 1.09008 * 109.63236 * 191.02868 * 21 20 10 35 35 H 1.08999 * 109.63571 * 311.42249 * 21 20 10 36 36 H 1.08996 * 109.38784 * 76.57445 * 22 7 6 37 37 H 1.09002 * 109.38311 * 316.88140 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1633 -1.2096 0.0005 5 6 3.5475 -1.2163 -0.1195 6 6 4.2288 -2.4152 -0.1175 7 6 3.5416 -3.6143 0.0041 8 6 2.1675 -3.6120 0.1208 9 6 1.4782 -2.4094 0.1204 10 6 1.3785 -4.8886 0.2497 11 1 0.9138 -5.1199 -0.7088 12 6 0.3057 -4.7081 1.2926 13 1 0.2178 -3.7697 1.8200 14 6 -0.5636 -5.7408 1.5733 15 7 -0.4570 -6.8833 0.9307 16 14 -1.8939 -5.5166 2.8655 17 1 -2.6905 -6.7649 2.9775 18 1 -1.2650 -5.2111 4.1755 19 1 -2.7841 -4.3957 2.4703 20 7 2.2551 -5.9963 0.6430 21 6 3.4067 -6.0824 -0.2691 22 6 4.3330 -4.8974 0.0056 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5137 26 1 3.2657 1.0715 -0.0905 27 1 1.8681 1.8785 -0.8413 28 1 2.0038 1.8001 0.9318 29 1 4.0878 -0.2859 -0.2143 30 1 5.3047 -2.4206 -0.2104 31 1 0.4023 -2.4067 0.2139 32 1 -1.0688 -7.6097 1.1279 33 1 2.5585 -5.8951 1.6000 34 1 3.9435 -7.0149 -0.0943 35 1 3.0595 -6.0478 -1.3017 36 1 4.8089 -5.0278 0.9774 37 1 5.0997 -4.8505 -0.7678 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083703832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:20 Heat of formation + Delta-G solvation = 40.614313 kcal Electronic energy + Delta-G solvation = -18072.888097 eV Core-core repulsion = 15428.969397 eV Total energy + Delta-G solvation = -2643.918700 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47631 -37.12800 -34.54322 -32.89528 -31.15771 -29.64000 -28.56078 -27.50889 -25.36165 -24.13655 -22.45241 -21.33462 -20.79915 -18.65070 -16.68412 -16.49400 -15.31687 -14.87275 -14.75878 -14.54019 -13.74957 -13.70388 -13.29258 -13.11342 -12.91291 -12.43266 -12.36255 -11.93067 -11.90475 -11.69420 -11.42568 -11.13272 -10.85192 -10.79538 -10.71326 -10.28232 -10.05636 -9.74180 -9.17175 -8.91856 -8.44474 -7.79947 -6.87039 -6.66965 -5.87691 -4.02037 2.19834 2.28068 3.35129 3.40421 3.42842 3.50651 4.45368 4.59146 5.12145 5.29912 5.30911 5.45577 5.51984 5.57304 5.69415 5.73910 5.82334 5.87867 5.92201 5.99261 6.09210 6.17336 6.20346 6.40087 6.55822 6.60168 6.75822 6.81068 6.98149 7.19400 7.44399 7.52088 7.54519 7.71433 7.92293 8.05973 8.24366 8.61616 8.96457 9.11919 9.65851 11.16359 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.009143 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.674613 B = 3061.751272 C = 4398.594268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.645 5.645 3 C 0.096 3.904 4 C 0.196 3.804 5 C -0.217 4.217 6 C -0.083 4.083 7 C -0.149 4.149 8 C -0.028 4.028 9 C -0.173 4.173 10 C 0.248 3.752 11 H 0.053 0.947 12 C -0.533 4.533 13 H 0.058 0.942 14 C 0.082 3.918 15 N -0.847 5.847 16 Si 0.884 3.116 17 H -0.288 1.288 18 H -0.278 1.278 19 H -0.278 1.278 20 N -0.642 5.642 21 C 0.051 3.949 22 C -0.106 4.106 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.257 0.743 33 H 0.326 0.674 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 10.756 -2.434 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.359 5.359 3 C -0.048 4.048 4 C 0.097 3.903 5 C -0.239 4.239 6 C -0.102 4.102 7 C -0.151 4.151 8 C -0.031 4.031 9 C -0.196 4.196 10 C 0.140 3.860 11 H 0.070 0.930 12 C -0.572 4.572 13 H 0.076 0.924 14 C -0.125 4.125 15 N -0.481 5.481 16 Si 0.711 3.289 17 H -0.214 1.214 18 H -0.204 1.204 19 H -0.204 1.204 20 N -0.268 5.268 21 C -0.080 4.080 22 C -0.145 4.145 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.147 0.853 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.381 10.188 -2.801 11.858 hybrid contribution -0.117 1.089 1.050 1.517 sum 5.265 11.277 -1.751 12.568 Atomic orbital electron populations 1.21536 0.79851 1.02211 1.00983 1.46148 1.04675 1.02915 1.82183 1.21555 0.97687 0.85443 1.00074 1.17855 0.91135 0.85680 0.95640 1.20395 0.92392 0.97674 1.13401 1.20669 0.98278 0.91834 0.99408 1.19452 0.93703 0.94312 1.07624 1.21079 0.92811 0.98156 0.91028 1.20815 1.00518 0.89951 1.08279 1.18209 0.89279 0.80589 0.97918 0.92975 1.20966 1.13757 0.99572 1.22875 0.92361 1.24982 0.96718 0.95196 0.95605 1.70103 1.35636 1.02847 1.39555 0.86824 0.82163 0.77284 0.82587 1.21362 1.20355 1.20398 1.61340 1.14480 1.46735 1.04291 1.22062 0.92239 0.94957 0.98722 1.21098 0.98073 0.94618 1.00697 0.93797 0.92420 0.90936 0.90713 0.93436 0.93814 0.87150 0.87525 0.85340 0.93290 0.85688 0.92324 0.92110 0.92212 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.35 10.10 59.85 0.60 1.95 16 2 N -0.64 -9.99 3.41 -187.61 -0.64 -10.63 16 3 C 0.10 1.13 10.63 59.85 0.64 1.77 16 4 C 0.20 3.61 6.53 -83.87 -0.55 3.07 16 5 C -0.22 -3.72 9.31 -39.45 -0.37 -4.09 16 6 C -0.08 -1.47 9.64 -39.52 -0.38 -1.85 16 7 C -0.15 -2.97 5.78 -104.53 -0.60 -3.57 16 8 C -0.03 -0.62 5.47 -104.64 -0.57 -1.19 16 9 C -0.17 -3.65 7.85 -39.28 -0.31 -3.96 16 10 C 0.25 6.23 2.38 -70.20 -0.17 6.06 16 11 H 0.05 1.46 8.14 -51.92 -0.42 1.04 16 12 C -0.53 -14.34 7.82 -34.44 -0.27 -14.61 16 13 H 0.06 1.57 6.74 -52.48 -0.35 1.22 16 14 C 0.08 2.24 5.39 -17.82 -0.10 2.14 16 15 N -0.85 -24.23 12.76 55.43 0.71 -23.52 16 16 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 N -0.64 -15.30 5.94 -109.28 -0.65 -15.95 16 21 C 0.05 1.01 6.62 -3.74 -0.02 0.98 16 22 C -0.11 -1.88 5.82 -27.92 -0.16 -2.05 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 25 H 0.07 1.08 6.46 -51.93 -0.34 0.74 16 26 H 0.07 0.84 5.32 -51.93 -0.28 0.57 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.11 1.59 5.76 -52.48 -0.30 1.29 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.13 2.79 5.33 -52.49 -0.28 2.51 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.33 7.81 8.55 -39.29 -0.34 7.48 16 34 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 35 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 293.93 15.07 4.43 4.43 Total: -1.00 -29.35 293.93 -8.67 -38.01 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.24 Total: 7.02 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -2.26 Total: -15.34 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.58 Total: -50.10 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.35 -8.67 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083703832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.629 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds