Wall clock time and date at job start Mon Mar 30 2020 04:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99798 * 2 1 4 4 C 1.39667 * 119.99506 * 179.97438 * 2 1 3 5 5 C 1.38941 * 120.14331 * 174.26569 * 4 2 1 6 6 C 1.37894 * 119.75192 * 179.97438 * 5 4 2 7 7 C 1.38742 * 120.45451 * 359.97438 * 6 5 4 8 8 C 1.37908 * 119.96570 * 0.15501 * 7 6 5 9 9 C 1.38613 * 119.79612 * 359.79331 * 8 7 6 10 10 C 1.50631 * 121.85001 * 179.76233 * 8 7 6 11 11 H 1.09008 * 109.13134 * 257.25602 * 10 8 7 12 12 C 1.50702 * 109.30438 * 137.77540 * 10 8 7 13 13 H 1.08005 * 119.99421 * 358.95804 * 12 10 8 14 14 C 1.37875 * 120.00120 * 178.96092 * 12 10 8 15 15 N 1.31516 * 120.00261 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99630 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47030 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47144 * 299.99325 * 16 14 12 19 19 H 1.48491 * 109.47498 * 59.99892 * 16 14 12 20 20 N 1.46632 * 110.49272 * 17.46010 * 10 8 7 21 21 C 1.47162 * 110.22792 * 307.44790 * 20 10 8 22 22 C 1.50753 * 118.40575 * 180.20558 * 7 6 5 23 23 H 1.09004 * 109.46774 * 270.00482 * 1 2 3 24 24 H 1.08998 * 109.46844 * 29.99891 * 1 2 3 25 25 H 1.08996 * 109.47297 * 150.00395 * 1 2 3 26 26 H 1.08993 * 109.46526 * 185.05231 * 3 2 1 27 27 H 1.08997 * 109.46968 * 305.05172 * 3 2 1 28 28 H 1.09000 * 109.47008 * 65.05248 * 3 2 1 29 29 H 1.08004 * 120.12285 * 359.95724 * 5 4 2 30 30 H 1.07996 * 119.76924 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.83301 * 180.13521 * 9 8 7 32 32 H 0.97001 * 119.99864 * 180.02562 * 15 14 12 33 33 H 1.00895 * 110.99688 * 70.85797 * 20 10 8 34 34 H 1.09008 * 109.63236 * 191.02868 * 21 20 10 35 35 H 1.08999 * 109.63571 * 311.42249 * 21 20 10 36 36 H 1.08996 * 109.38784 * 76.57445 * 22 7 6 37 37 H 1.09002 * 109.38311 * 316.88140 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1633 -1.2096 0.0005 5 6 3.5475 -1.2163 -0.1195 6 6 4.2288 -2.4152 -0.1175 7 6 3.5416 -3.6143 0.0041 8 6 2.1675 -3.6120 0.1208 9 6 1.4782 -2.4094 0.1204 10 6 1.3785 -4.8886 0.2497 11 1 0.9138 -5.1199 -0.7088 12 6 0.3057 -4.7081 1.2926 13 1 0.2178 -3.7697 1.8200 14 6 -0.5636 -5.7408 1.5733 15 7 -0.4570 -6.8833 0.9307 16 14 -1.8939 -5.5166 2.8655 17 1 -2.6905 -6.7649 2.9775 18 1 -1.2650 -5.2111 4.1755 19 1 -2.7841 -4.3957 2.4703 20 7 2.2551 -5.9963 0.6430 21 6 3.4067 -6.0824 -0.2691 22 6 4.3330 -4.8974 0.0056 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5137 26 1 3.2657 1.0715 -0.0905 27 1 1.8681 1.8785 -0.8413 28 1 2.0038 1.8001 0.9318 29 1 4.0878 -0.2859 -0.2143 30 1 5.3047 -2.4206 -0.2104 31 1 0.4023 -2.4067 0.2139 32 1 -1.0688 -7.6097 1.1279 33 1 2.5585 -5.8951 1.6000 34 1 3.9435 -7.0149 -0.0943 35 1 3.0595 -6.0478 -1.3017 36 1 4.8089 -5.0278 0.9774 37 1 5.0997 -4.8505 -0.7678 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083703832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:19 Heat of formation + Delta-G solvation = 22.197336 kcal Electronic energy + Delta-G solvation = -18073.686717 eV Core-core repulsion = 15428.969397 eV Total energy + Delta-G solvation = -2644.717320 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96025 -38.56005 -36.04517 -34.73971 -32.89072 -31.11939 -29.96817 -28.75187 -27.24866 -25.47370 -24.15566 -22.82527 -22.35688 -20.18145 -18.49585 -18.02670 -16.70650 -16.51881 -16.32719 -15.87924 -15.32457 -15.17615 -14.87145 -14.63281 -14.34679 -14.08372 -13.74059 -13.36174 -13.14661 -12.95836 -12.84785 -12.78400 -12.64548 -12.55248 -12.27075 -11.88728 -11.76661 -11.50227 -10.98153 -10.56053 -10.31410 -9.40135 -8.64871 -8.01651 -7.94870 -6.18039 0.71679 0.80891 1.43321 1.44231 1.51778 2.35166 2.46663 3.07354 3.24863 3.95950 4.04146 4.13231 4.18540 4.34033 4.39960 4.51961 4.52552 4.54074 4.65430 4.78741 4.79307 4.84232 4.91009 5.01650 5.07202 5.13933 5.22964 5.31809 5.44108 5.56693 5.72106 5.78235 5.92266 6.06640 6.31320 6.48095 6.67736 6.71195 7.08933 7.11301 7.53113 9.06027 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.009143 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.674613 B = 3061.751272 C = 4398.594268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.649 5.649 3 C 0.090 3.910 4 C 0.195 3.805 5 C -0.211 4.211 6 C -0.076 4.076 7 C -0.167 4.167 8 C -0.058 4.058 9 C -0.198 4.198 10 C 0.256 3.744 11 H 0.004 0.996 12 C -0.541 4.541 13 H 0.050 0.950 14 C 0.035 3.965 15 N -0.881 5.881 16 Si 0.947 3.053 17 H -0.284 1.284 18 H -0.274 1.274 19 H -0.273 1.273 20 N -0.661 5.661 21 C 0.051 3.949 22 C -0.095 4.095 23 H 0.040 0.960 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.106 0.894 32 H 0.256 0.744 33 H 0.322 0.678 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 13.100 -2.116 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.362 5.362 3 C -0.052 4.052 4 C 0.094 3.906 5 C -0.233 4.233 6 C -0.094 4.094 7 C -0.169 4.169 8 C -0.061 4.061 9 C -0.221 4.221 10 C 0.147 3.853 11 H 0.022 0.978 12 C -0.579 4.579 13 H 0.068 0.932 14 C -0.169 4.169 15 N -0.516 5.516 16 Si 0.773 3.227 17 H -0.210 1.210 18 H -0.200 1.200 19 H -0.198 1.198 20 N -0.288 5.288 21 C -0.079 4.079 22 C -0.134 4.134 23 H 0.059 0.941 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.200 12.574 -2.487 14.701 hybrid contribution -0.663 0.476 0.892 1.209 sum 6.536 13.050 -1.595 14.682 Atomic orbital electron populations 1.21605 0.79467 1.02813 1.00994 1.46445 1.05326 1.03242 1.81183 1.21809 0.97818 0.83844 1.01723 1.17966 0.92050 0.85871 0.94730 1.20822 0.91762 0.99157 1.11511 1.21039 1.00019 0.90855 0.97530 1.19700 0.92791 0.96343 1.08066 1.20844 0.94205 0.97007 0.94042 1.20687 0.99657 0.91246 1.10538 1.17796 0.89743 0.82763 0.94958 0.97829 1.21205 1.14678 0.99123 1.22921 0.93188 1.25692 0.98773 0.94906 0.97538 1.70238 1.36696 1.03561 1.41141 0.85816 0.79555 0.77302 0.80043 1.20976 1.19982 1.19793 1.61130 1.16334 1.46696 1.04642 1.22092 0.91617 0.97198 0.96976 1.21004 0.97732 0.92413 1.02260 0.94112 0.89071 0.93052 0.89856 0.91247 0.92509 0.83567 0.83880 0.87621 0.93469 0.86111 0.90406 0.93550 0.91091 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.53 10.10 127.77 1.29 3.82 16 2 N -0.65 -18.79 3.41 -747.48 -2.55 -21.34 16 3 C 0.09 1.77 10.63 127.77 1.36 3.13 16 4 C 0.19 6.95 6.53 38.17 0.25 7.20 16 5 C -0.21 -6.53 9.31 22.36 0.21 -6.33 16 6 C -0.08 -2.43 9.64 22.31 0.22 -2.22 16 7 C -0.17 -6.46 5.78 -19.81 -0.11 -6.58 16 8 C -0.06 -2.68 5.47 -19.87 -0.11 -2.79 16 9 C -0.20 -8.63 7.85 22.46 0.18 -8.45 16 10 C 0.26 13.60 2.38 43.45 0.10 13.70 16 11 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 12 C -0.54 -30.56 7.82 25.60 0.20 -30.36 16 13 H 0.05 2.83 6.74 -2.91 -0.02 2.81 16 14 C 0.03 1.95 5.39 84.65 0.46 2.41 16 15 N -0.88 -52.44 12.76 21.45 0.27 -52.17 16 16 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 N -0.66 -32.74 5.94 -499.64 -2.97 -35.71 16 21 C 0.05 2.04 6.62 86.22 0.57 2.61 16 22 C -0.10 -3.22 5.82 29.83 0.17 -3.05 16 23 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.09 1.81 8.07 -2.39 -0.02 1.79 16 25 H 0.05 1.59 6.46 -2.39 -0.02 1.57 16 26 H 0.08 1.49 5.32 -2.39 -0.01 1.47 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.15 3.45 5.76 -2.91 -0.02 3.44 16 30 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 31 H 0.11 4.92 5.33 -2.91 -0.02 4.91 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.32 15.96 8.55 -89.70 -0.77 15.19 16 34 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 35 H 0.05 1.94 8.05 -2.39 -0.02 1.92 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -66.37 293.93 1.86 -64.50 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.31 Total: 25.19 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 4.78 Total: -26.90 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -5.24 Total: -109.22 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.37 1.86 -64.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083703832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.699 kcal (2) G-P(sol) polarization free energy of solvation -66.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds