Wall clock time and date at job start Mon Mar 30 2020 03:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00478 * 2 1 4 4 H 1.48493 * 109.47511 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46768 * 299.99913 * 3 2 1 6 6 H 1.48504 * 109.46912 * 59.99480 * 3 2 1 7 7 C 1.37877 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00102 * 173.06311 * 7 2 1 9 9 C 1.50705 * 120.00074 * 353.06432 * 7 2 1 10 10 C 1.53005 * 115.54859 * 84.96291 * 9 7 2 11 11 N 1.46906 * 109.46873 * 65.16945 * 10 9 7 12 12 C 1.46893 * 110.99798 * 174.70074 * 11 10 9 13 13 C 1.52998 * 109.47306 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47138 * 180.02562 * 13 12 11 15 15 C 1.38228 * 119.61739 * 124.98062 * 14 13 12 16 16 C 1.38627 * 119.15677 * 179.79067 * 15 14 13 17 17 C 1.38672 * 118.42267 * 0.46563 * 16 15 14 18 18 C 1.38173 * 119.16210 * 359.50966 * 17 16 15 19 19 N 1.31852 * 119.61555 * 304.99214 * 14 13 12 20 20 C 1.53001 * 117.49899 * 230.63491 * 9 7 2 21 21 C 1.52994 * 117.49773 * 299.29687 * 9 7 2 22 22 H 0.97006 * 119.99615 * 5.03473 * 1 2 3 23 23 H 1.08997 * 109.46711 * 305.17496 * 10 9 7 24 24 H 1.08996 * 109.46629 * 185.17040 * 10 9 7 25 25 H 1.00889 * 110.99968 * 298.65488 * 11 10 9 26 26 H 1.09000 * 109.47430 * 59.99600 * 12 11 10 27 27 H 1.09004 * 109.47289 * 300.00224 * 12 11 10 28 28 H 1.08998 * 109.47172 * 60.00212 * 13 12 11 29 29 H 1.09004 * 109.46876 * 300.00166 * 13 12 11 30 30 H 1.08002 * 120.42142 * 359.97438 * 15 14 13 31 31 H 1.08003 * 120.78493 * 180.22982 * 16 15 14 32 32 H 1.07997 * 120.41547 * 179.78336 * 17 16 15 33 33 H 1.08000 * 119.61614 * 180.24801 * 18 17 16 34 34 H 1.09006 * 117.49565 * 215.00361 * 20 9 7 35 35 H 1.08997 * 117.49935 * 0.02562 * 20 9 7 36 36 H 1.09001 * 117.50243 * 359.96816 * 21 9 7 37 37 H 1.08999 * 117.49673 * 144.97474 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0785 -1.1976 -0.1124 9 6 1.2591 -2.4944 0.1587 10 6 0.6844 -3.0865 -1.1297 11 7 1.7838 -3.4625 -2.0287 12 6 1.2753 -4.1497 -3.2233 13 6 2.4467 -4.5254 -4.1330 14 6 1.9249 -5.2298 -5.3588 15 6 2.2504 -4.7494 -6.6134 16 6 1.7689 -5.4074 -7.7345 17 6 0.9663 -6.5233 -7.5510 18 6 0.6836 -6.9454 -6.2660 19 7 1.1630 -6.2972 -5.2221 20 6 1.7622 -3.4721 1.2226 21 6 0.4606 -2.6986 1.4476 22 1 -0.4850 0.8369 -0.0737 23 1 0.0519 -2.3460 -1.6193 24 1 0.0920 -3.9697 -0.8909 25 1 2.3351 -2.6566 -2.2825 26 1 0.5948 -3.4891 -3.7605 27 1 0.7438 -5.0532 -2.9241 28 1 3.1267 -5.1862 -3.5956 29 1 2.9785 -3.6221 -4.4322 30 1 2.8745 -3.8742 -6.7188 31 1 2.0099 -5.0569 -8.7272 32 1 0.5708 -7.0582 -8.4017 33 1 0.0627 -7.8159 -6.1146 34 1 1.6838 -4.5372 1.0046 35 1 2.6320 -3.1747 1.8084 36 1 0.4746 -1.8927 2.1815 37 1 -0.4743 -3.2545 1.3777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:33 Heat of formation + Delta-G solvation = 50.520068 kcal Electronic energy + Delta-G solvation = -16935.635614 eV Core-core repulsion = 14292.146460 eV Total energy + Delta-G solvation = -2643.489154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22925 -36.96964 -35.07337 -32.61804 -32.19670 -31.85029 -28.67337 -25.64271 -24.52702 -23.60440 -22.40865 -21.08435 -20.78591 -18.95597 -16.91181 -16.28034 -15.88659 -15.50814 -15.21084 -14.58883 -14.03673 -13.93330 -13.74893 -13.47310 -13.00370 -12.66737 -12.35274 -12.03143 -11.66307 -11.24793 -11.01953 -10.94341 -10.86467 -10.66502 -10.38459 -10.05975 -9.95160 -9.45032 -9.34067 -8.98354 -8.68590 -8.38044 -8.00039 -7.42055 -5.98751 -4.04559 1.03978 1.20282 3.28646 3.37890 3.41923 3.73512 4.26858 4.42628 4.58352 4.73106 4.97686 5.03001 5.14251 5.29963 5.43625 5.49396 5.60841 5.64023 5.80084 5.94602 6.01827 6.09273 6.24607 6.38240 6.46516 6.56046 6.65703 6.67372 6.92144 6.92977 6.99575 7.23922 7.59503 7.62724 7.92109 7.98183 8.06614 8.36642 8.55570 8.99159 9.60810 11.09275 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.004502 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.703932 B = 6217.815592 C = 6806.520179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.491 4.491 8 H 0.061 0.939 9 C 0.050 3.950 10 C 0.107 3.893 11 N -0.682 5.682 12 C 0.070 3.930 13 C -0.069 4.069 14 C 0.143 3.857 15 C -0.173 4.173 16 C -0.075 4.075 17 C -0.187 4.187 18 C 0.101 3.899 19 N -0.479 5.479 20 C -0.200 4.200 21 C -0.163 4.163 22 H 0.258 0.742 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.345 0.655 26 H 0.017 0.983 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 -9.841 -13.892 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.529 4.529 8 H 0.079 0.921 9 C 0.049 3.951 10 C -0.022 4.022 11 N -0.313 5.313 12 C -0.061 4.061 13 C -0.108 4.108 14 C 0.005 3.995 15 C -0.193 4.193 16 C -0.101 4.101 17 C -0.207 4.207 18 C -0.056 4.056 19 N -0.188 5.188 20 C -0.237 4.237 21 C -0.201 4.201 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.163 0.837 26 H 0.035 0.965 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.997 -10.584 -12.645 16.610 hybrid contribution 0.056 1.987 -1.483 2.480 sum 2.053 -8.597 -14.128 16.665 Atomic orbital electron populations 1.70009 1.05883 1.26404 1.49454 1.25011 0.94758 0.98805 0.94778 0.86629 0.80370 0.84058 0.77505 1.19648 1.21235 1.21054 1.20520 0.93153 0.88843 1.50431 0.92115 1.18745 0.97334 0.93345 0.85667 1.21412 0.90971 0.95926 0.93876 1.60438 1.24204 1.32106 1.14526 1.21775 0.94619 0.98864 0.90815 1.20579 0.98825 0.99428 0.91935 1.21426 0.92192 0.91249 0.94677 1.22053 1.02420 1.01753 0.93066 1.21568 0.95020 0.94419 0.99123 1.22094 1.01051 0.98672 0.98917 1.22781 0.96500 0.98214 0.88119 1.67539 1.09270 1.07417 1.34609 1.22869 0.97541 0.95912 1.07408 1.22533 0.92508 1.01343 1.03752 0.93219 0.94757 0.94443 0.83686 0.96524 0.90813 0.89036 0.90448 0.84756 0.85065 0.85104 0.82914 0.91640 0.90936 0.90386 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 12.95 55.43 0.72 -24.26 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.79 16 3 Si 0.89 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.49 -13.26 8.33 -34.44 -0.29 -13.54 16 8 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 9 C 0.05 1.25 1.56 -155.66 -0.24 1.00 16 10 C 0.11 2.48 5.54 -3.82 -0.02 2.45 16 11 N -0.68 -13.73 6.47 -113.78 -0.74 -14.46 16 12 C 0.07 1.20 5.53 -3.83 -0.02 1.18 16 13 C -0.07 -0.98 5.87 -27.88 -0.16 -1.15 16 14 C 0.14 1.93 6.18 -82.59 -0.51 1.42 16 15 C -0.17 -1.94 9.71 -39.44 -0.38 -2.32 16 16 C -0.08 -0.72 10.18 -39.28 -0.40 -1.12 16 17 C -0.19 -1.75 10.11 -39.44 -0.40 -2.15 16 18 C 0.10 1.13 11.18 -17.55 -0.20 0.93 16 19 N -0.48 -6.80 9.88 -9.47 -0.09 -6.90 16 20 C -0.20 -4.59 9.96 -26.69 -0.27 -4.86 16 21 C -0.16 -3.98 9.46 -26.69 -0.25 -4.23 16 22 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 23 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.34 7.07 8.30 -39.30 -0.33 6.75 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 1.34 7.95 -51.93 -0.41 0.92 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 30 H 0.13 1.25 7.95 -52.49 -0.42 0.83 16 31 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -29.65 316.61 -9.36 -39.01 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.76 Total: 6.50 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.24 Total: -20.59 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.11 Total: -45.62 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.65 -9.36 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.526 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds