Wall clock time and date at job start Mon Mar 30 2020 03:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00478 * 2 1 4 4 H 1.48493 * 109.47511 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46768 * 299.99913 * 3 2 1 6 6 H 1.48504 * 109.46912 * 59.99480 * 3 2 1 7 7 C 1.37877 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00102 * 173.06311 * 7 2 1 9 9 C 1.50705 * 120.00074 * 353.06432 * 7 2 1 10 10 C 1.53005 * 115.54859 * 84.96291 * 9 7 2 11 11 N 1.46906 * 109.46873 * 65.16945 * 10 9 7 12 12 C 1.46893 * 110.99798 * 174.70074 * 11 10 9 13 13 C 1.52998 * 109.47306 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47138 * 180.02562 * 13 12 11 15 15 C 1.38228 * 119.61739 * 124.98062 * 14 13 12 16 16 C 1.38627 * 119.15677 * 179.79067 * 15 14 13 17 17 C 1.38672 * 118.42267 * 0.46563 * 16 15 14 18 18 C 1.38173 * 119.16210 * 359.50966 * 17 16 15 19 19 N 1.31852 * 119.61555 * 304.99214 * 14 13 12 20 20 C 1.53001 * 117.49899 * 230.63491 * 9 7 2 21 21 C 1.52994 * 117.49773 * 299.29687 * 9 7 2 22 22 H 0.97006 * 119.99615 * 5.03473 * 1 2 3 23 23 H 1.08997 * 109.46711 * 305.17496 * 10 9 7 24 24 H 1.08996 * 109.46629 * 185.17040 * 10 9 7 25 25 H 1.00889 * 110.99968 * 298.65488 * 11 10 9 26 26 H 1.09000 * 109.47430 * 59.99600 * 12 11 10 27 27 H 1.09004 * 109.47289 * 300.00224 * 12 11 10 28 28 H 1.08998 * 109.47172 * 60.00212 * 13 12 11 29 29 H 1.09004 * 109.46876 * 300.00166 * 13 12 11 30 30 H 1.08002 * 120.42142 * 359.97438 * 15 14 13 31 31 H 1.08003 * 120.78493 * 180.22982 * 16 15 14 32 32 H 1.07997 * 120.41547 * 179.78336 * 17 16 15 33 33 H 1.08000 * 119.61614 * 180.24801 * 18 17 16 34 34 H 1.09006 * 117.49565 * 215.00361 * 20 9 7 35 35 H 1.08997 * 117.49935 * 0.02562 * 20 9 7 36 36 H 1.09001 * 117.50243 * 359.96816 * 21 9 7 37 37 H 1.08999 * 117.49673 * 144.97474 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0785 -1.1976 -0.1124 9 6 1.2591 -2.4944 0.1587 10 6 0.6844 -3.0865 -1.1297 11 7 1.7838 -3.4625 -2.0287 12 6 1.2753 -4.1497 -3.2233 13 6 2.4467 -4.5254 -4.1330 14 6 1.9249 -5.2298 -5.3588 15 6 2.2504 -4.7494 -6.6134 16 6 1.7689 -5.4074 -7.7345 17 6 0.9663 -6.5233 -7.5510 18 6 0.6836 -6.9454 -6.2660 19 7 1.1630 -6.2972 -5.2221 20 6 1.7622 -3.4721 1.2226 21 6 0.4606 -2.6986 1.4476 22 1 -0.4850 0.8369 -0.0737 23 1 0.0519 -2.3460 -1.6193 24 1 0.0920 -3.9697 -0.8909 25 1 2.3351 -2.6566 -2.2825 26 1 0.5948 -3.4891 -3.7605 27 1 0.7438 -5.0532 -2.9241 28 1 3.1267 -5.1862 -3.5956 29 1 2.9785 -3.6221 -4.4322 30 1 2.8745 -3.8742 -6.7188 31 1 2.0099 -5.0569 -8.7272 32 1 0.5708 -7.0582 -8.4017 33 1 0.0627 -7.8159 -6.1146 34 1 1.6838 -4.5372 1.0046 35 1 2.6320 -3.1747 1.8084 36 1 0.4746 -1.8927 2.1815 37 1 -0.4743 -3.2545 1.3777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:33 Heat of formation + Delta-G solvation = 32.844647 kcal Electronic energy + Delta-G solvation = -16936.402077 eV Core-core repulsion = 14292.146460 eV Total energy + Delta-G solvation = -2644.255618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08327 -38.80654 -36.56666 -33.98574 -33.62325 -33.14272 -29.88848 -27.62435 -26.09953 -24.48484 -23.66786 -22.80854 -22.14895 -20.90258 -17.96741 -17.65247 -17.16262 -16.73884 -16.58499 -16.36819 -15.72276 -15.33029 -14.95854 -14.73516 -14.24245 -13.98255 -13.77091 -13.45531 -13.17980 -12.91915 -12.85953 -12.52997 -12.44158 -12.24581 -12.07500 -11.95004 -11.30604 -10.77383 -10.70323 -10.40837 -10.29715 -9.93695 -9.83616 -9.13905 -8.06786 -6.18332 0.20937 0.41436 1.41046 1.45177 1.55674 2.44698 2.87148 3.20992 3.22649 3.49064 3.71748 3.97486 4.05982 4.17492 4.28792 4.31397 4.35788 4.43125 4.60641 4.67524 4.73703 4.78180 4.87751 4.97002 5.00876 5.07224 5.10286 5.18467 5.29183 5.30851 5.32526 5.67223 5.68767 5.81671 5.85166 6.33004 6.49616 6.67590 6.91299 7.12559 7.49940 9.01058 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.004502 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.703932 B = 6217.815592 C = 6806.520179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.121 3.879 11 N -0.678 5.678 12 C 0.078 3.922 13 C -0.059 4.059 14 C 0.114 3.886 15 C -0.178 4.178 16 C -0.076 4.076 17 C -0.177 4.177 18 C 0.083 3.917 19 N -0.516 5.516 20 C -0.177 4.177 21 C -0.169 4.169 22 H 0.258 0.742 23 H 0.003 0.997 24 H 0.041 0.959 25 H 0.343 0.657 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -10.287 -15.739 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.025 3.975 10 C -0.009 4.009 11 N -0.308 5.308 12 C -0.052 4.052 13 C -0.097 4.097 14 C -0.024 4.024 15 C -0.198 4.198 16 C -0.102 4.102 17 C -0.197 4.197 18 C -0.074 4.074 19 N -0.226 5.226 20 C -0.215 4.215 21 C -0.207 4.207 22 H 0.067 0.933 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.161 0.839 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.168 0.832 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.190 0.810 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.889 -11.043 -14.496 18.451 hybrid contribution -0.248 2.043 -0.968 2.274 sum 2.640 -9.000 -15.464 18.086 Atomic orbital electron populations 1.70123 1.07220 1.27085 1.50461 1.25691 0.95463 1.01891 0.94532 0.85636 0.79396 0.80072 0.77314 1.18899 1.20775 1.21211 1.20732 0.93043 0.89987 1.50169 0.92603 1.18904 0.98174 0.93761 0.86646 1.21150 0.91229 0.94937 0.93566 1.60422 1.23111 1.31681 1.15606 1.21716 0.95823 0.97567 0.90089 1.20428 0.97317 1.00047 0.91912 1.21338 0.93822 0.92083 0.95124 1.22277 1.02497 1.02332 0.92709 1.22014 0.94119 0.93990 1.00053 1.22494 0.99753 0.98285 0.99156 1.23236 0.96842 0.98812 0.88535 1.67447 1.10366 1.08297 1.36538 1.22844 0.96599 0.96422 1.05587 1.22460 0.93709 1.01390 1.03179 0.93305 0.97919 0.94078 0.83944 0.97521 0.91902 0.89637 0.89081 0.83158 0.81777 0.81717 0.81002 0.89844 0.90698 0.92389 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.39 12.95 21.45 0.28 -52.11 16 2 C 0.02 1.31 5.39 84.66 0.46 1.77 16 3 Si 0.95 43.13 29.55 68.60 2.03 45.15 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.50 -27.14 8.33 25.60 0.21 -26.93 16 8 H 0.06 3.01 7.82 -2.91 -0.02 2.99 16 9 C 0.03 1.30 1.56 -52.93 -0.08 1.22 16 10 C 0.12 5.67 5.54 86.30 0.48 6.15 16 11 N -0.68 -27.48 6.47 -513.89 -3.32 -30.80 16 12 C 0.08 2.73 5.53 86.30 0.48 3.20 16 13 C -0.06 -1.66 5.87 29.85 0.18 -1.48 16 14 C 0.11 3.02 6.18 42.55 0.26 3.28 16 15 C -0.18 -3.67 9.71 22.36 0.22 -3.46 16 16 C -0.08 -1.21 10.18 22.47 0.23 -0.98 16 17 C -0.18 -2.78 10.11 22.36 0.23 -2.56 16 18 C 0.08 1.72 11.18 84.67 0.95 2.67 16 19 N -0.52 -14.48 9.88 -183.89 -1.82 -16.30 16 20 C -0.18 -8.00 9.96 30.62 0.30 -7.69 16 21 C -0.17 -8.30 9.46 30.62 0.29 -8.01 16 22 H 0.26 14.19 8.32 -92.70 -0.77 13.42 16 23 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 24 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 25 H 0.34 14.14 8.30 -89.70 -0.74 13.40 16 26 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.06 2.33 7.95 -2.38 -0.02 2.31 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.09 2.25 7.87 -2.38 -0.02 2.23 16 30 H 0.15 2.47 7.95 -2.91 -0.02 2.44 16 31 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 35 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -63.72 316.61 1.65 -62.07 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.30 Total: 24.80 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.19 Total: -32.82 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -4.86 Total: -99.21 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -63.72 1.65 -62.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.911 kcal (2) G-P(sol) polarization free energy of solvation -63.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds