Wall clock time and date at job start Mon Mar 30 2020 03:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48503 * 109.46535 * 269.99776 * 3 2 1 5 5 H 1.48497 * 109.47005 * 29.99202 * 3 2 1 6 6 H 1.48495 * 109.47372 * 149.99684 * 3 2 1 7 7 C 1.37877 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00035 * 175.14828 * 7 2 1 9 9 C 1.50704 * 119.99772 * 355.41935 * 7 2 1 10 10 C 1.53002 * 115.55169 * 274.92999 * 9 7 2 11 11 N 1.46902 * 109.46866 * 294.79949 * 10 9 7 12 12 C 1.46898 * 110.99651 * 185.37362 * 11 10 9 13 13 C 1.53001 * 109.46844 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47284 * 180.02562 * 13 12 11 15 15 C 1.38674 * 120.41860 * 269.72853 * 14 13 12 16 16 C 1.38631 * 118.42122 * 179.77885 * 15 14 13 17 17 C 1.38226 * 119.15575 * 0.51175 * 16 15 14 18 18 N 1.31849 * 120.76965 * 359.72773 * 17 16 15 19 19 C 1.31890 * 121.72590 * 359.97438 * 18 17 16 20 20 C 1.53004 * 117.49534 * 129.25757 * 9 7 2 21 21 C 1.52998 * 117.49596 * 60.60380 * 9 7 2 22 22 H 0.97004 * 120.00286 * 5.00657 * 1 2 3 23 23 H 1.08995 * 109.46680 * 54.79753 * 10 9 7 24 24 H 1.08993 * 109.47014 * 174.80229 * 10 9 7 25 25 H 1.00902 * 110.99538 * 61.42896 * 11 10 9 26 26 H 1.08996 * 109.47593 * 300.00366 * 12 11 10 27 27 H 1.09005 * 109.46551 * 60.00755 * 12 11 10 28 28 H 1.08996 * 109.47366 * 300.00556 * 13 12 11 29 29 H 1.09005 * 109.46888 * 60.01013 * 13 12 11 30 30 H 1.08000 * 120.79283 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.42086 * 180.21684 * 16 15 14 32 32 H 1.08001 * 119.61678 * 179.74886 * 17 16 15 33 33 H 1.07996 * 119.62341 * 179.97438 * 19 18 17 34 34 H 1.08998 * 117.49727 * 0.02562 * 20 9 7 35 35 H 1.09000 * 117.49374 * 145.02051 * 20 9 7 36 36 H 1.09004 * 117.49634 * 214.98118 * 21 9 7 37 37 H 1.08994 * 117.50107 * 359.96929 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2546 -2.4970 0.1054 10 6 0.9188 -2.9527 1.5268 11 7 2.1614 -3.2474 2.2529 12 6 1.8751 -3.8093 3.5796 13 6 3.1905 -4.1032 4.3036 14 6 2.8970 -4.6802 5.6645 15 6 2.7559 -3.8478 6.7646 16 6 2.4816 -4.4224 7.9960 17 6 2.3692 -5.7970 8.0876 18 7 2.5144 -6.5583 7.0209 19 6 2.7700 -6.0459 5.8328 20 6 1.5731 -3.5803 -0.9272 21 6 0.2454 -2.8219 -0.9977 22 1 -0.4851 0.8369 -0.0733 23 1 0.3753 -2.1614 2.0430 24 1 0.3013 -3.8498 1.4844 25 1 2.7412 -2.4249 2.3260 26 1 1.2928 -3.0933 4.1596 27 1 1.3079 -4.7334 3.4681 28 1 3.7724 -4.8193 3.7235 29 1 3.7581 -3.1793 4.4152 30 1 2.8535 -2.7769 6.6637 31 1 2.3620 -3.8042 8.8734 32 1 2.1597 -6.2528 9.0441 33 1 2.8829 -6.7012 4.9819 34 1 2.3252 -3.3507 -1.6819 35 1 1.5430 -4.6177 -0.5938 36 1 -0.6578 -3.3605 -0.7107 37 1 0.1234 -2.0930 -1.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:48 Heat of formation + Delta-G solvation = 48.164902 kcal Electronic energy + Delta-G solvation = -16933.124358 eV Core-core repulsion = 14289.533076 eV Total energy + Delta-G solvation = -2643.591282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.23327 -37.07234 -35.34858 -32.91731 -31.95647 -31.84139 -28.52268 -25.68128 -24.51138 -23.63006 -22.51025 -21.18153 -20.83715 -19.00653 -17.16600 -16.49070 -15.95783 -15.33828 -15.04385 -14.64330 -14.19858 -13.97813 -13.73116 -13.37863 -13.14069 -12.81083 -12.49172 -12.16832 -11.67547 -11.30935 -11.14575 -10.97630 -10.95041 -10.74818 -10.44346 -10.07204 -9.86073 -9.53158 -9.34327 -8.97923 -8.84248 -8.39016 -8.04676 -7.54214 -6.01577 -4.09196 1.02251 1.19390 3.26844 3.34472 3.36994 3.71888 4.34380 4.38985 4.63776 4.72835 4.90220 4.93315 5.13857 5.25726 5.29171 5.49449 5.51978 5.61243 5.73484 5.86292 5.99411 6.04930 6.18497 6.27333 6.36490 6.49496 6.58439 6.63507 6.83750 6.86354 6.94041 7.22554 7.51327 7.62401 7.87957 7.88107 7.95963 8.23668 8.50744 8.94647 9.56596 11.05496 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.004540 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.098883 B = 6166.010035 C = 6791.803195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.492 4.492 8 H 0.060 0.940 9 C 0.046 3.954 10 C 0.106 3.894 11 N -0.681 5.681 12 C 0.065 3.935 13 C -0.077 4.077 14 C -0.121 4.121 15 C -0.075 4.075 16 C -0.172 4.172 17 C 0.085 3.915 18 N -0.486 5.486 19 C 0.100 3.900 20 C -0.201 4.201 21 C -0.156 4.156 22 H 0.259 0.741 23 H 0.030 0.970 24 H 0.039 0.961 25 H 0.347 0.653 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 -7.180 12.695 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.045 3.955 10 C -0.022 4.022 11 N -0.312 5.312 12 C -0.065 4.065 13 C -0.115 4.115 14 C -0.124 4.124 15 C -0.101 4.101 16 C -0.192 4.192 17 C -0.072 4.072 18 N -0.194 5.194 19 C -0.057 4.057 20 C -0.238 4.238 21 C -0.194 4.194 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.165 0.835 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.173 0.827 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.971 -8.571 12.559 15.715 hybrid contribution 0.031 2.754 0.377 2.780 sum 4.002 -5.817 12.936 14.738 Atomic orbital electron populations 1.70008 1.05850 1.26516 1.49352 1.25012 0.94783 0.98818 0.94778 0.86682 0.79947 0.83747 0.78191 1.20711 1.21364 1.19774 1.20473 0.92792 0.88778 1.50963 0.92200 1.18745 0.97930 0.92799 0.86017 1.21442 0.88966 0.96487 0.95352 1.60446 1.19193 1.36760 1.14824 1.21859 0.94891 0.99340 0.90400 1.20570 0.98660 1.01586 0.90674 1.21012 0.99685 0.94960 0.96725 1.21579 0.95872 1.00529 0.92153 1.22134 1.01853 0.96641 0.98551 1.22709 0.96477 0.90723 0.97298 1.67680 1.11594 1.40743 0.99391 1.22743 0.95218 0.92809 0.94919 1.22868 0.99711 0.95876 1.05338 1.22498 0.90864 1.01763 1.04305 0.93145 0.95175 0.94284 0.83451 0.96107 0.91765 0.89673 0.90788 0.84867 0.84988 0.83082 0.82674 0.90941 0.91771 0.92382 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.62 12.65 55.43 0.70 -23.92 16 2 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.49 -13.03 8.33 -34.44 -0.29 -13.32 16 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 9 C 0.05 1.12 1.65 -155.66 -0.26 0.86 16 10 C 0.11 2.35 5.54 -3.82 -0.02 2.33 16 11 N -0.68 -12.85 6.47 -113.78 -0.74 -13.59 16 12 C 0.07 1.00 5.66 -3.82 -0.02 0.98 16 13 C -0.08 -0.96 5.63 -27.88 -0.16 -1.11 16 14 C -0.12 -1.45 5.15 -104.48 -0.54 -1.98 16 15 C -0.08 -0.82 9.86 -39.28 -0.39 -1.21 16 16 C -0.17 -1.68 10.11 -39.44 -0.40 -2.08 16 17 C 0.08 0.90 11.18 -17.55 -0.20 0.70 16 18 N -0.49 -6.20 10.36 -13.25 -0.14 -6.34 16 19 C 0.10 1.22 10.86 -17.55 -0.19 1.03 16 20 C -0.20 -4.50 9.96 -26.69 -0.27 -4.77 16 21 C -0.16 -3.74 9.14 -26.70 -0.24 -3.99 16 22 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 25 H 0.35 6.77 8.31 -39.29 -0.33 6.44 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 29 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -28.77 316.78 -9.26 -38.03 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.78 Total: 6.24 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -3.06 Total: -20.81 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.17 Total: -43.85 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.77 -9.26 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.197 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds