Wall clock time and date at job start Mon Mar 30 2020 03:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48503 * 109.46535 * 269.99776 * 3 2 1 5 5 H 1.48497 * 109.47005 * 29.99202 * 3 2 1 6 6 H 1.48495 * 109.47372 * 149.99684 * 3 2 1 7 7 C 1.37877 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00035 * 175.14828 * 7 2 1 9 9 C 1.50704 * 119.99772 * 355.41935 * 7 2 1 10 10 C 1.53002 * 115.55169 * 274.92999 * 9 7 2 11 11 N 1.46902 * 109.46866 * 294.79949 * 10 9 7 12 12 C 1.46898 * 110.99651 * 185.37362 * 11 10 9 13 13 C 1.53001 * 109.46844 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47284 * 180.02562 * 13 12 11 15 15 C 1.38674 * 120.41860 * 269.72853 * 14 13 12 16 16 C 1.38631 * 118.42122 * 179.77885 * 15 14 13 17 17 C 1.38226 * 119.15575 * 0.51175 * 16 15 14 18 18 N 1.31849 * 120.76965 * 359.72773 * 17 16 15 19 19 C 1.31890 * 121.72590 * 359.97438 * 18 17 16 20 20 C 1.53004 * 117.49534 * 129.25757 * 9 7 2 21 21 C 1.52998 * 117.49596 * 60.60380 * 9 7 2 22 22 H 0.97004 * 120.00286 * 5.00657 * 1 2 3 23 23 H 1.08995 * 109.46680 * 54.79753 * 10 9 7 24 24 H 1.08993 * 109.47014 * 174.80229 * 10 9 7 25 25 H 1.00902 * 110.99538 * 61.42896 * 11 10 9 26 26 H 1.08996 * 109.47593 * 300.00366 * 12 11 10 27 27 H 1.09005 * 109.46551 * 60.00755 * 12 11 10 28 28 H 1.08996 * 109.47366 * 300.00556 * 13 12 11 29 29 H 1.09005 * 109.46888 * 60.01013 * 13 12 11 30 30 H 1.08000 * 120.79283 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.42086 * 180.21684 * 16 15 14 32 32 H 1.08001 * 119.61678 * 179.74886 * 17 16 15 33 33 H 1.07996 * 119.62341 * 179.97438 * 19 18 17 34 34 H 1.08998 * 117.49727 * 0.02562 * 20 9 7 35 35 H 1.09000 * 117.49374 * 145.02051 * 20 9 7 36 36 H 1.09004 * 117.49634 * 214.98118 * 21 9 7 37 37 H 1.08994 * 117.50107 * 359.96929 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2546 -2.4970 0.1054 10 6 0.9188 -2.9527 1.5268 11 7 2.1614 -3.2474 2.2529 12 6 1.8751 -3.8093 3.5796 13 6 3.1905 -4.1032 4.3036 14 6 2.8970 -4.6802 5.6645 15 6 2.7559 -3.8478 6.7646 16 6 2.4816 -4.4224 7.9960 17 6 2.3692 -5.7970 8.0876 18 7 2.5144 -6.5583 7.0209 19 6 2.7700 -6.0459 5.8328 20 6 1.5731 -3.5803 -0.9272 21 6 0.2454 -2.8219 -0.9977 22 1 -0.4851 0.8369 -0.0733 23 1 0.3753 -2.1614 2.0430 24 1 0.3013 -3.8498 1.4844 25 1 2.7412 -2.4249 2.3260 26 1 1.2928 -3.0933 4.1596 27 1 1.3079 -4.7334 3.4681 28 1 3.7724 -4.8193 3.7235 29 1 3.7581 -3.1793 4.4152 30 1 2.8535 -2.7769 6.6637 31 1 2.3620 -3.8042 8.8734 32 1 2.1597 -6.2528 9.0441 33 1 2.8829 -6.7012 4.9819 34 1 2.3252 -3.3507 -1.6819 35 1 1.5430 -4.6177 -0.5938 36 1 -0.6578 -3.3605 -0.7107 37 1 0.1234 -2.0930 -1.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:48 Heat of formation + Delta-G solvation = 31.582662 kcal Electronic energy + Delta-G solvation = -16933.843418 eV Core-core repulsion = 14289.533076 eV Total energy + Delta-G solvation = -2644.310342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07898 -38.81419 -36.72289 -34.13204 -33.86222 -32.77978 -29.70955 -27.61404 -26.00635 -24.46543 -23.75600 -22.77257 -22.18743 -20.89700 -18.01987 -17.84700 -17.40851 -16.62286 -16.51265 -16.24804 -15.71420 -15.28761 -14.84774 -14.71905 -14.16639 -14.02046 -13.89467 -13.56572 -13.29808 -12.92966 -12.82716 -12.60434 -12.45375 -12.28326 -12.01625 -11.89684 -11.21856 -10.81876 -10.70025 -10.39018 -10.35135 -9.94031 -9.83396 -9.14061 -8.05956 -6.18827 0.19133 0.35776 1.42316 1.44729 1.53660 2.44475 2.86242 3.21264 3.27263 3.59922 3.75115 3.92441 4.03772 4.10780 4.17189 4.25841 4.40738 4.41028 4.61142 4.66943 4.69285 4.74212 4.90097 4.96733 5.00999 5.06789 5.09800 5.19676 5.23684 5.32442 5.43725 5.66285 5.72224 5.82043 5.83000 6.32906 6.49491 6.65589 6.91052 7.04483 7.49725 9.00670 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.004540 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.098883 B = 6166.010035 C = 6791.803195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.501 4.501 8 H 0.055 0.945 9 C 0.023 3.977 10 C 0.120 3.880 11 N -0.678 5.678 12 C 0.069 3.931 13 C -0.063 4.063 14 C -0.132 4.132 15 C -0.084 4.084 16 C -0.168 4.168 17 C 0.078 3.922 18 N -0.512 5.512 19 C 0.087 3.913 20 C -0.178 4.178 21 C -0.164 4.164 22 H 0.258 0.742 23 H 0.000 1.000 24 H 0.046 0.954 25 H 0.343 0.657 26 H 0.015 0.985 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.162 0.838 32 H 0.178 0.822 33 H 0.162 0.838 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -7.365 14.054 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.022 3.978 10 C -0.010 4.010 11 N -0.309 5.309 12 C -0.060 4.060 13 C -0.102 4.102 14 C -0.134 4.134 15 C -0.110 4.110 16 C -0.187 4.187 17 C -0.079 4.079 18 N -0.221 5.221 19 C -0.070 4.070 20 C -0.215 4.215 21 C -0.202 4.202 22 H 0.067 0.933 23 H 0.018 0.982 24 H 0.065 0.935 25 H 0.161 0.839 26 H 0.033 0.967 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.163 0.837 31 H 0.180 0.820 32 H 0.195 0.805 33 H 0.179 0.821 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.922 -8.771 13.920 17.173 hybrid contribution -0.268 2.768 0.003 2.781 sum 4.653 -6.003 13.923 15.860 Atomic orbital electron populations 1.70123 1.07154 1.27085 1.50494 1.25680 0.95475 1.01852 0.94621 0.85715 0.79011 0.79859 0.78044 1.20656 1.21430 1.18765 1.20710 0.92715 0.90012 1.50497 0.92695 1.18928 0.98320 0.93093 0.87441 1.21172 0.89996 0.95597 0.94189 1.60421 1.17504 1.36212 1.16733 1.21887 0.96626 0.98734 0.88790 1.20398 0.96910 1.01962 0.90888 1.20934 1.00831 0.95052 0.96614 1.21860 0.95542 1.01201 0.92424 1.22464 1.00414 0.96684 0.99133 1.23245 0.95530 0.91310 0.97777 1.67698 1.12600 1.41727 1.00053 1.22903 0.95590 0.93175 0.95282 1.22842 0.98254 0.96392 1.04024 1.22401 0.92030 1.01998 1.03777 0.93346 0.98213 0.93521 0.83929 0.96706 0.91720 0.89349 0.90286 0.83674 0.81999 0.80464 0.82067 0.91024 0.89651 0.91411 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.55 12.65 21.45 0.27 -51.28 16 2 C 0.02 1.26 5.43 84.66 0.46 1.72 16 3 Si 0.95 42.35 29.54 68.60 2.03 44.37 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.50 -26.54 8.33 25.60 0.21 -26.33 16 8 H 0.05 2.90 7.82 -2.91 -0.02 2.88 16 9 C 0.02 1.11 1.65 -52.92 -0.09 1.02 16 10 C 0.12 5.28 5.54 86.30 0.48 5.76 16 11 N -0.68 -25.09 6.47 -513.90 -3.32 -28.42 16 12 C 0.07 2.06 5.66 86.30 0.49 2.55 16 13 C -0.06 -1.50 5.63 29.85 0.17 -1.33 16 14 C -0.13 -2.96 5.15 -19.77 -0.10 -3.06 16 15 C -0.08 -1.67 9.86 22.47 0.22 -1.45 16 16 C -0.17 -2.82 10.11 22.36 0.23 -2.60 16 17 C 0.08 1.48 11.18 84.69 0.95 2.42 16 18 N -0.51 -12.40 10.36 -195.84 -2.03 -14.43 16 19 C 0.09 2.03 10.86 84.67 0.92 2.95 16 20 C -0.18 -7.78 9.96 30.62 0.30 -7.47 16 21 C -0.16 -7.87 9.14 30.62 0.28 -7.59 16 22 H 0.26 14.02 8.32 -92.70 -0.77 13.25 16 23 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 24 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 25 H 0.34 13.19 8.31 -89.69 -0.74 12.44 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 29 H 0.08 1.78 8.09 -2.38 -0.02 1.76 16 30 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -60.67 316.78 1.76 -58.92 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.29 Total: 24.25 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 4.52 Total: -33.41 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -5.08 Total: -94.13 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -60.67 1.76 -58.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.499 kcal (2) G-P(sol) polarization free energy of solvation -60.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds