Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48499 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46812 * 299.99807 * 3 2 1 6 6 H 1.48500 * 109.47252 * 60.00035 * 3 2 1 7 7 C 1.37880 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00123 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.39670 * 119.99965 * 270.00336 * 10 9 7 12 12 C 1.38911 * 120.07563 * 185.71232 * 11 10 9 13 13 C 1.38097 * 119.92837 * 179.76595 * 12 11 10 14 14 C 1.38287 * 120.07398 * 0.50957 * 13 12 11 15 15 C 1.38283 * 120.14870 * 359.74411 * 14 13 12 16 16 C 1.38103 * 120.07504 * 359.97438 * 15 14 13 17 17 C 1.46499 * 119.99866 * 90.00181 * 10 9 7 18 18 H 1.08997 * 110.87330 * 179.69794 * 17 10 9 19 19 C 1.55141 * 110.99265 * 55.84691 * 17 10 9 20 20 C 1.54321 * 103.01996 * 206.21981 * 19 17 10 21 21 N 1.47443 * 107.23190 * 22.27944 * 20 19 17 22 22 C 1.47845 * 108.56893 * 0.99382 * 21 20 19 23 23 H 0.96997 * 119.99950 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46910 * 60.00061 * 9 7 2 25 25 H 1.08999 * 109.47114 * 299.99946 * 9 7 2 26 26 H 1.08000 * 120.03268 * 359.97438 * 12 11 10 27 27 H 1.07999 * 119.96822 * 180.25199 * 13 12 11 28 28 H 1.07999 * 119.92899 * 179.76431 * 14 13 12 29 29 H 1.08002 * 119.96615 * 180.02562 * 15 14 13 30 30 H 1.08001 * 120.03789 * 180.02562 * 16 15 14 31 31 H 1.08990 * 110.70582 * 87.83056 * 19 17 10 32 32 H 1.08999 * 110.85373 * 324.67106 * 19 17 10 33 33 H 1.08995 * 109.88312 * 262.88076 * 20 19 17 34 34 H 1.08990 * 110.02382 * 141.76394 * 20 19 17 35 35 H 1.00906 * 110.99903 * 123.25796 * 21 20 19 36 36 H 1.09000 * 110.37244 * 94.73368 * 22 21 20 37 37 H 1.09001 * 110.37119 * 217.07260 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.6560 -4.1430 -1.2119 12 6 3.4644 -5.2726 -1.2179 13 6 3.9065 -5.7971 -2.4164 14 6 3.5540 -5.1929 -3.6094 15 6 2.7538 -4.0652 -3.6068 16 6 2.3034 -3.5388 -2.4121 17 6 2.6800 -4.1701 1.2663 18 1 3.3751 -4.9914 1.0926 19 6 1.4926 -4.6253 2.1549 20 6 2.0672 -4.5210 3.5833 21 7 3.1957 -3.5735 3.5320 22 6 3.3272 -3.0725 2.1473 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6247 -2.5572 0.8897 26 1 3.7440 -5.7421 -0.2864 27 1 4.5317 -6.6778 -2.4220 28 1 3.9042 -5.6029 -4.5451 29 1 2.4799 -3.5959 -4.5402 30 1 1.6781 -2.6583 -2.4108 31 1 1.2122 -5.6535 1.9264 32 1 0.6389 -3.9585 2.0333 33 1 2.4185 -5.4984 3.9139 34 1 1.3032 -4.1510 4.2669 35 1 3.0587 -2.8126 4.1804 36 1 2.7926 -2.1295 2.0326 37 1 4.3783 -2.9478 1.8871 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086409940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = 37.713633 kcal Electronic energy + Delta-G solvation = -18119.603165 eV Core-core repulsion = 15475.558683 eV Total energy + Delta-G solvation = -2644.044483 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.25858 -37.74139 -34.86108 -32.71209 -30.42964 -29.64754 -28.89947 -27.99640 -25.98606 -23.18663 -21.86823 -20.90116 -20.81946 -19.06170 -17.33474 -16.57511 -16.01942 -15.20049 -14.92822 -14.24556 -14.23670 -13.66367 -13.18121 -12.93206 -12.88694 -12.64923 -12.59395 -12.07383 -11.40883 -11.38674 -11.34028 -11.18240 -10.88887 -10.83321 -10.72868 -10.34857 -10.20300 -9.87875 -9.58919 -8.91615 -8.57252 -8.28776 -8.09120 -6.52911 -6.07860 -4.22215 2.08359 2.29265 3.20794 3.29938 3.34504 3.92121 4.33880 4.55101 4.78023 5.04698 5.14851 5.24690 5.36821 5.51845 5.53164 5.65092 5.77757 5.86480 5.99101 6.09589 6.18647 6.30533 6.34670 6.42415 6.50680 6.63879 6.69889 6.94957 7.08914 7.14710 7.17679 7.24074 7.32659 7.60250 7.66068 7.76266 8.10342 8.24116 8.46963 8.87135 9.43946 10.89474 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.010290 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.235956 B = 2720.566824 C = 4142.130436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.604 5.604 11 C 0.238 3.762 12 C -0.220 4.220 13 C -0.079 4.079 14 C -0.203 4.203 15 C -0.078 4.078 16 C -0.184 4.184 17 C 0.148 3.852 18 H 0.090 0.910 19 C -0.159 4.159 20 C 0.051 3.949 21 N -0.688 5.688 22 C 0.025 3.975 23 H 0.263 0.737 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.337 0.663 36 H 0.085 0.915 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -8.470 1.102 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.309 5.309 11 C 0.132 3.868 12 C -0.243 4.243 13 C -0.098 4.098 14 C -0.223 4.223 15 C -0.097 4.097 16 C -0.207 4.207 17 C 0.042 3.958 18 H 0.108 0.892 19 C -0.198 4.198 20 C -0.079 4.079 21 N -0.317 5.317 22 C -0.104 4.104 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.151 0.849 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.136 -8.740 1.247 9.750 hybrid contribution -0.361 1.657 -0.031 1.696 sum 3.775 -7.084 1.217 8.119 Atomic orbital electron populations 1.69937 1.05988 1.27030 1.50244 1.24966 0.94820 0.99218 0.95067 0.86518 0.80257 0.83522 0.77684 1.19624 1.20860 1.21013 1.21617 0.93673 0.90496 1.50850 0.91976 1.19244 0.87358 0.82533 0.97912 1.47008 1.47187 1.35982 1.00699 1.17921 0.91325 0.90843 0.86683 1.20624 1.06289 0.99388 0.98008 1.20678 0.98348 0.98476 0.92281 1.20674 1.05005 0.99486 0.97181 1.20837 0.96402 0.95356 0.97104 1.20938 1.06134 1.02799 0.90818 1.21868 0.94521 0.95335 0.84070 0.89247 1.23192 0.99701 1.01944 0.94951 1.22473 0.91787 0.97370 0.96263 1.61873 1.42678 1.19637 1.07504 1.23393 1.01153 0.99423 0.86464 0.92706 0.94798 0.95081 0.86884 0.87377 0.87632 0.87095 0.84933 0.91314 0.90172 0.91358 0.93327 0.84855 0.89644 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.53 -13.64 7.34 -34.44 -0.25 -13.89 16 8 H 0.06 1.66 7.70 -52.48 -0.40 1.25 16 9 C 0.25 5.96 4.21 -5.19 -0.02 5.94 16 10 N -0.60 -12.45 2.66 -163.12 -0.43 -12.88 16 11 C 0.24 4.78 6.54 -83.79 -0.55 4.24 16 12 C -0.22 -3.89 9.31 -39.38 -0.37 -4.25 16 13 C -0.08 -1.26 10.04 -39.61 -0.40 -1.66 16 14 C -0.20 -3.25 10.04 -39.55 -0.40 -3.64 16 15 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 16 C -0.18 -3.73 9.16 -39.38 -0.36 -4.09 16 17 C 0.15 2.66 3.38 -65.79 -0.22 2.44 16 18 H 0.09 1.52 5.45 -51.93 -0.28 1.24 16 19 C -0.16 -2.57 6.49 -24.91 -0.16 -2.73 16 20 C 0.05 0.73 7.58 -2.83 -0.02 0.71 16 21 N -0.69 -10.75 7.39 -110.79 -0.82 -11.57 16 22 C 0.03 0.46 6.91 -2.30 -0.02 0.44 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.03 0.88 6.47 -51.93 -0.34 0.54 16 25 H 0.03 0.79 6.15 -51.93 -0.32 0.47 16 26 H 0.11 1.83 5.79 -52.49 -0.30 1.53 16 27 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 28 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.13 2.95 6.26 -52.49 -0.33 2.62 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.46 6.15 -51.93 -0.32 1.14 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.34 4.86 8.91 -39.29 -0.35 4.51 16 36 H 0.09 1.81 5.70 -51.93 -0.30 1.52 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -27.09 294.31 -9.40 -36.49 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.03 Total: 8.56 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -3.26 Total: -16.72 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.52 Total: -48.55 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.09 -9.40 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086409940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.202 kcal (2) G-P(sol) polarization free energy of solvation -27.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds