Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48499 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46812 * 299.99807 * 3 2 1 6 6 H 1.48500 * 109.47252 * 60.00035 * 3 2 1 7 7 C 1.37880 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00123 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.39670 * 119.99965 * 270.00336 * 10 9 7 12 12 C 1.38911 * 120.07563 * 185.71232 * 11 10 9 13 13 C 1.38097 * 119.92837 * 179.76595 * 12 11 10 14 14 C 1.38287 * 120.07398 * 0.50957 * 13 12 11 15 15 C 1.38283 * 120.14870 * 359.74411 * 14 13 12 16 16 C 1.38103 * 120.07504 * 359.97438 * 15 14 13 17 17 C 1.46499 * 119.99866 * 90.00181 * 10 9 7 18 18 H 1.08997 * 110.87330 * 179.69794 * 17 10 9 19 19 C 1.55141 * 110.99265 * 55.84691 * 17 10 9 20 20 C 1.54321 * 103.01996 * 206.21981 * 19 17 10 21 21 N 1.47443 * 107.23190 * 22.27944 * 20 19 17 22 22 C 1.47845 * 108.56893 * 0.99382 * 21 20 19 23 23 H 0.96997 * 119.99950 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46910 * 60.00061 * 9 7 2 25 25 H 1.08999 * 109.47114 * 299.99946 * 9 7 2 26 26 H 1.08000 * 120.03268 * 359.97438 * 12 11 10 27 27 H 1.07999 * 119.96822 * 180.25199 * 13 12 11 28 28 H 1.07999 * 119.92899 * 179.76431 * 14 13 12 29 29 H 1.08002 * 119.96615 * 180.02562 * 15 14 13 30 30 H 1.08001 * 120.03789 * 180.02562 * 16 15 14 31 31 H 1.08990 * 110.70582 * 87.83056 * 19 17 10 32 32 H 1.08999 * 110.85373 * 324.67106 * 19 17 10 33 33 H 1.08995 * 109.88312 * 262.88076 * 20 19 17 34 34 H 1.08990 * 110.02382 * 141.76394 * 20 19 17 35 35 H 1.00906 * 110.99903 * 123.25796 * 21 20 19 36 36 H 1.09000 * 110.37244 * 94.73368 * 22 21 20 37 37 H 1.09001 * 110.37119 * 217.07260 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.6560 -4.1430 -1.2119 12 6 3.4644 -5.2726 -1.2179 13 6 3.9065 -5.7971 -2.4164 14 6 3.5540 -5.1929 -3.6094 15 6 2.7538 -4.0652 -3.6068 16 6 2.3034 -3.5388 -2.4121 17 6 2.6800 -4.1701 1.2663 18 1 3.3751 -4.9914 1.0926 19 6 1.4926 -4.6253 2.1549 20 6 2.0672 -4.5210 3.5833 21 7 3.1957 -3.5735 3.5320 22 6 3.3272 -3.0725 2.1473 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6247 -2.5572 0.8897 26 1 3.7440 -5.7421 -0.2864 27 1 4.5317 -6.6778 -2.4220 28 1 3.9042 -5.6029 -4.5451 29 1 2.4799 -3.5959 -4.5402 30 1 1.6781 -2.6583 -2.4108 31 1 1.2122 -5.6535 1.9264 32 1 0.6389 -3.9585 2.0333 33 1 2.4185 -5.4984 3.9139 34 1 1.3032 -4.1510 4.2669 35 1 3.0587 -2.8126 4.1804 36 1 2.7926 -2.1295 2.0326 37 1 4.3783 -2.9478 1.8871 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086409940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = 21.563386 kcal Electronic energy + Delta-G solvation = -18120.303492 eV Core-core repulsion = 15475.558683 eV Total energy + Delta-G solvation = -2644.744810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70950 -39.09131 -36.41335 -34.65865 -31.86124 -31.03292 -30.39428 -29.55770 -27.63702 -24.98864 -23.29875 -22.28318 -22.17516 -20.55050 -18.79269 -18.58021 -17.47380 -16.73116 -16.45541 -15.88938 -15.61401 -14.98253 -14.89058 -14.41613 -14.35606 -14.23300 -13.95323 -13.69720 -13.17597 -12.97435 -12.76584 -12.63391 -12.56387 -12.39974 -12.28298 -12.00902 -11.72317 -11.61235 -11.19931 -10.64411 -10.48719 -9.67607 -9.40900 -8.36876 -7.84370 -6.33956 0.69312 0.90159 1.33176 1.36473 1.47369 2.30146 2.47046 3.06212 3.15429 3.46369 3.72747 3.89033 4.01251 4.23654 4.26524 4.34554 4.44239 4.55219 4.75270 4.78041 4.80291 4.87011 4.92095 5.05092 5.08822 5.13526 5.22392 5.30118 5.35101 5.60190 5.70085 5.76458 5.84911 5.88696 6.08768 6.22982 6.41690 6.51867 6.84373 6.94640 7.35959 8.83461 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.010290 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.235956 B = 2720.566824 C = 4142.130436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.050 0.950 9 C 0.272 3.728 10 N -0.613 5.613 11 C 0.210 3.790 12 C -0.220 4.220 13 C -0.073 4.073 14 C -0.194 4.194 15 C -0.082 4.082 16 C -0.216 4.216 17 C 0.145 3.855 18 H 0.107 0.893 19 C -0.154 4.154 20 C 0.054 3.946 21 N -0.682 5.682 22 C 0.032 3.968 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.013 0.987 26 H 0.130 0.870 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.343 0.657 36 H 0.049 0.951 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.736 -10.296 1.004 11.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.069 0.931 9 C 0.151 3.849 10 N -0.319 5.319 11 C 0.106 3.894 12 C -0.242 4.242 13 C -0.091 4.091 14 C -0.214 4.214 15 C -0.101 4.101 16 C -0.239 4.239 17 C 0.040 3.960 18 H 0.125 0.875 19 C -0.194 4.194 20 C -0.075 4.075 21 N -0.311 5.311 22 C -0.098 4.098 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.030 0.970 26 H 0.147 0.853 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.159 0.841 36 H 0.067 0.933 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.012 -10.589 1.147 12.231 hybrid contribution -0.904 2.123 -0.078 2.309 sum 5.108 -8.466 1.069 9.945 Atomic orbital electron populations 1.70039 1.07268 1.27799 1.51489 1.25695 0.95555 1.02333 0.94952 0.85572 0.78945 0.79783 0.77806 1.19493 1.20576 1.20269 1.21725 0.93038 0.91604 1.49911 0.93150 1.18676 0.87425 0.83412 0.95418 1.46828 1.47287 1.35686 1.02127 1.18221 0.92777 0.92247 0.86164 1.20867 1.05358 0.98300 0.99724 1.21158 0.97548 0.99107 0.91320 1.21107 1.03256 0.98162 0.98914 1.21095 0.96284 0.96018 0.96659 1.20852 1.07575 1.02799 0.92661 1.22054 0.95449 0.95420 0.83095 0.87526 1.23147 0.98107 1.02164 0.95950 1.22563 0.91632 0.98184 0.95127 1.61907 1.43373 1.19876 1.05956 1.23174 1.00261 0.98096 0.88304 0.92594 0.97774 0.96953 0.85276 0.83448 0.84103 0.85349 0.88562 0.89458 0.93057 0.88896 0.92176 0.84125 0.93296 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.53 13.29 21.45 0.28 -53.25 16 2 C 0.01 0.76 5.46 84.66 0.46 1.22 16 3 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.52 -28.42 7.34 25.60 0.19 -28.23 16 8 H 0.05 2.80 7.70 -2.91 -0.02 2.78 16 9 C 0.27 13.86 4.21 85.63 0.36 14.22 16 10 N -0.61 -26.12 2.66 -669.99 -1.78 -27.90 16 11 C 0.21 8.53 6.54 38.22 0.25 8.78 16 12 C -0.22 -7.30 9.31 22.40 0.21 -7.09 16 13 C -0.07 -2.04 10.04 22.25 0.22 -1.82 16 14 C -0.19 -5.54 10.04 22.29 0.22 -5.32 16 15 C -0.08 -2.78 10.04 22.25 0.22 -2.55 16 16 C -0.22 -9.05 9.16 22.40 0.21 -8.85 16 17 C 0.15 5.18 3.38 46.38 0.16 5.34 16 18 H 0.11 3.43 5.45 -2.39 -0.01 3.41 16 19 C -0.15 -4.92 6.49 31.78 0.21 -4.71 16 20 C 0.05 1.45 7.58 86.65 0.66 2.11 16 21 N -0.68 -20.50 7.39 -504.44 -3.73 -24.23 16 22 C 0.03 1.17 6.91 86.77 0.60 1.77 16 23 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 24 H 0.00 0.24 6.47 -2.38 -0.02 0.23 16 25 H 0.01 0.68 6.15 -2.39 -0.01 0.66 16 26 H 0.13 3.80 5.79 -2.91 -0.02 3.78 16 27 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.10 4.65 6.26 -2.91 -0.02 4.63 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.05 1.93 6.15 -2.39 -0.01 1.92 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.34 9.60 8.91 -89.69 -0.80 8.80 16 36 H 0.05 2.16 5.70 -2.39 -0.01 2.14 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -60.66 294.31 1.04 -59.62 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.27 Total: 25.10 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 3.96 Total: -25.13 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -5.22 Total: -105.38 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -60.66 1.04 -59.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086409940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.179 kcal (2) G-P(sol) polarization free energy of solvation -60.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds