Wall clock time and date at job start Mon Mar 30 2020 03:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00288 * 2 1 4 4 H 1.48507 * 109.47057 * 239.99986 * 3 2 1 5 5 H 1.48498 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46901 * 120.00138 * 3 2 1 7 7 C 1.37883 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00315 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.39671 * 120.00224 * 270.00295 * 10 9 7 12 12 C 1.38913 * 120.07602 * 185.44458 * 11 10 9 13 13 C 1.38104 * 119.92346 * 179.76623 * 12 11 10 14 14 C 1.38288 * 120.07413 * 0.50665 * 13 12 11 15 15 C 1.38284 * 120.14954 * 359.74267 * 14 13 12 16 16 C 1.38096 * 120.07333 * 0.02562 * 15 14 13 17 17 C 1.46502 * 119.99804 * 90.00582 * 10 9 7 18 18 H 1.08996 * 110.27242 * 177.19419 * 17 10 9 19 19 C 1.54594 * 110.30694 * 299.38490 * 17 10 9 20 20 C 1.54938 * 102.92357 * 96.96100 * 19 17 10 21 21 N 1.48531 * 103.22507 * 37.41234 * 20 19 17 22 22 C 1.47902 * 105.81954 * 320.79703 * 21 20 19 23 23 H 0.96997 * 120.00091 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47139 * 60.00252 * 9 7 2 25 25 H 1.09005 * 109.47088 * 300.00525 * 9 7 2 26 26 H 1.07996 * 120.03424 * 359.97438 * 12 11 10 27 27 H 1.08003 * 119.95881 * 180.24424 * 13 12 11 28 28 H 1.08000 * 119.92324 * 179.76402 * 14 13 12 29 29 H 1.08003 * 119.96007 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.03632 * 180.02562 * 16 15 14 31 31 H 1.09000 * 110.72753 * 215.31933 * 19 17 10 32 32 H 1.09004 * 110.72449 * 338.60333 * 19 17 10 33 33 H 1.09004 * 110.66582 * 278.97963 * 20 19 17 34 34 H 1.08995 * 110.80971 * 155.91566 * 20 19 17 35 35 H 1.00905 * 110.99726 * 81.30558 * 21 20 19 36 36 H 1.08999 * 109.91708 * 265.96782 * 22 21 20 37 37 H 1.09005 * 109.91435 * 144.68361 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6568 -4.1435 -1.2101 12 6 3.4698 -5.2699 -1.2146 13 6 3.9128 -5.7950 -2.4126 14 6 3.5566 -5.1945 -3.6064 15 6 2.7518 -4.0701 -3.6052 16 6 2.3013 -3.5427 -2.4110 17 6 2.6788 -4.1695 1.2682 18 1 3.3382 -5.0178 1.0847 19 6 3.4130 -3.0842 2.0887 20 6 2.3146 -2.5809 3.0586 21 7 1.5680 -3.8191 3.3986 22 6 1.4872 -4.5985 2.1441 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.7522 -5.7364 -0.2824 27 1 4.5417 -6.6731 -2.4170 28 1 3.9076 -5.6050 -4.5416 29 1 2.4751 -3.6038 -4.5393 30 1 1.6724 -2.6647 -2.4108 31 1 4.2469 -3.5167 2.6415 32 1 3.7553 -2.2769 1.4413 33 1 1.6624 -1.8626 2.5618 34 1 2.7585 -2.1418 3.9520 35 1 2.0435 -4.3418 4.1189 36 1 0.5510 -4.3796 1.6306 37 1 1.5527 -5.6641 2.3642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086409942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:40 Heat of formation + Delta-G solvation = 41.962684 kcal Electronic energy + Delta-G solvation = -18317.073453 eV Core-core repulsion = 15673.213223 eV Total energy + Delta-G solvation = -2643.860230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36913 -37.78119 -34.61002 -32.67534 -30.43216 -29.43461 -28.56496 -28.26712 -25.79673 -23.13928 -21.84624 -21.28532 -20.67073 -18.89314 -17.29207 -16.52034 -15.98180 -15.25266 -14.96713 -14.23878 -13.86670 -13.75771 -13.45812 -12.91311 -12.83854 -12.56229 -12.07330 -11.96495 -11.38612 -11.33036 -11.26167 -11.05452 -10.78722 -10.75362 -10.50838 -10.31039 -10.25516 -9.84859 -9.51980 -8.94133 -8.49178 -8.28970 -8.19328 -6.48412 -6.01561 -4.15205 2.08204 2.30086 3.26686 3.32290 3.34705 4.01604 4.39198 4.56087 4.69694 5.20046 5.22516 5.33053 5.48823 5.51245 5.59146 5.69100 5.79639 5.93176 5.99906 6.08938 6.27021 6.30695 6.37577 6.50199 6.63863 6.71649 6.83337 7.00351 7.08817 7.15668 7.18584 7.29115 7.40225 7.61344 7.76087 7.81638 8.17152 8.28638 8.50866 8.92208 9.50336 10.96677 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.010148 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.478728 B = 2758.636300 C = 3976.533312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.249 3.751 10 N -0.602 5.602 11 C 0.238 3.762 12 C -0.223 4.223 13 C -0.079 4.079 14 C -0.205 4.205 15 C -0.077 4.077 16 C -0.185 4.185 17 C 0.125 3.875 18 H 0.081 0.919 19 C -0.167 4.167 20 C 0.043 3.957 21 N -0.673 5.673 22 C 0.033 3.967 23 H 0.264 0.736 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.324 0.676 36 H 0.086 0.914 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 -8.715 0.986 10.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.129 3.871 10 N -0.307 5.307 11 C 0.132 3.868 12 C -0.246 4.246 13 C -0.098 4.098 14 C -0.225 4.225 15 C -0.096 4.096 16 C -0.207 4.207 17 C 0.018 3.982 18 H 0.099 0.901 19 C -0.207 4.207 20 C -0.086 4.086 21 N -0.299 5.299 22 C -0.098 4.098 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.151 0.849 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.613 -8.196 1.192 9.480 hybrid contribution 1.500 0.699 -0.136 1.660 sum 6.113 -7.497 1.056 9.731 Atomic orbital electron populations 1.69914 1.05894 1.27126 1.50074 1.24930 0.94771 0.98983 0.95216 0.86683 0.79630 0.83208 0.78689 1.20259 1.21276 1.20258 1.21488 0.93278 0.90516 1.51093 0.92340 1.19294 0.87340 0.82285 0.98155 1.47155 1.47138 1.35922 1.00510 1.17949 0.91212 0.90767 0.86855 1.20585 1.06551 0.99632 0.97854 1.20665 0.98359 0.98424 0.92324 1.20659 1.05093 0.99645 0.97136 1.20838 0.96338 0.95320 0.97132 1.20938 1.06120 1.02861 0.90800 1.22120 0.95241 0.95486 0.85393 0.90130 1.23470 0.97775 1.00116 0.99328 1.23249 0.94550 0.93394 0.97384 1.62791 1.52574 1.06737 1.07755 1.23180 0.99738 0.96283 0.90631 0.92638 0.95166 0.94246 0.87094 0.87487 0.87686 0.87128 0.84909 0.92781 0.88557 0.87449 0.92085 0.86163 0.89604 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.45 7.33 -34.44 -0.25 -13.70 16 8 H 0.06 1.53 6.51 -52.48 -0.34 1.19 16 9 C 0.25 5.95 3.72 -5.20 -0.02 5.93 16 10 N -0.60 -12.27 2.51 -164.01 -0.41 -12.68 16 11 C 0.24 4.75 6.54 -83.79 -0.55 4.21 16 12 C -0.22 -3.88 9.31 -39.38 -0.37 -4.25 16 13 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 14 C -0.20 -3.28 10.04 -39.55 -0.40 -3.67 16 15 C -0.08 -1.35 10.04 -39.62 -0.40 -1.75 16 16 C -0.18 -3.74 9.16 -39.38 -0.36 -4.10 16 17 C 0.12 2.16 3.38 -66.58 -0.22 1.94 16 18 H 0.08 1.27 5.38 -51.93 -0.28 0.99 16 19 C -0.17 -2.89 6.13 -24.87 -0.15 -3.04 16 20 C 0.04 0.76 7.05 -1.90 -0.01 0.75 16 21 N -0.67 -10.87 7.51 -110.09 -0.83 -11.69 16 22 C 0.03 0.54 6.73 -2.76 -0.02 0.52 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 24 H 0.03 0.79 6.46 -51.93 -0.34 0.46 16 25 H 0.04 1.01 5.49 -51.93 -0.28 0.73 16 26 H 0.11 1.74 5.76 -52.49 -0.30 1.44 16 27 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.13 2.97 6.26 -52.48 -0.33 2.64 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.95 5.90 -51.93 -0.31 1.64 16 33 H 0.11 2.35 6.04 -51.93 -0.31 2.04 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.32 4.32 8.92 -39.29 -0.35 3.97 16 36 H 0.09 1.64 6.65 -51.93 -0.35 1.29 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 289.37 15.07 4.36 4.36 Total: -1.00 -27.09 289.37 -9.27 -36.36 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.86 Total: 9.26 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -3.25 Total: -17.24 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.50 Total: -48.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.09 -9.27 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086409942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.319 kcal (2) G-P(sol) polarization free energy of solvation -27.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds