Wall clock time and date at job start Mon Mar 30 2020 03:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00288 * 2 1 4 4 H 1.48507 * 109.47057 * 239.99986 * 3 2 1 5 5 H 1.48498 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46901 * 120.00138 * 3 2 1 7 7 C 1.37883 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00315 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.39671 * 120.00224 * 270.00295 * 10 9 7 12 12 C 1.38913 * 120.07602 * 185.44458 * 11 10 9 13 13 C 1.38104 * 119.92346 * 179.76623 * 12 11 10 14 14 C 1.38288 * 120.07413 * 0.50665 * 13 12 11 15 15 C 1.38284 * 120.14954 * 359.74267 * 14 13 12 16 16 C 1.38096 * 120.07333 * 0.02562 * 15 14 13 17 17 C 1.46502 * 119.99804 * 90.00582 * 10 9 7 18 18 H 1.08996 * 110.27242 * 177.19419 * 17 10 9 19 19 C 1.54594 * 110.30694 * 299.38490 * 17 10 9 20 20 C 1.54938 * 102.92357 * 96.96100 * 19 17 10 21 21 N 1.48531 * 103.22507 * 37.41234 * 20 19 17 22 22 C 1.47902 * 105.81954 * 320.79703 * 21 20 19 23 23 H 0.96997 * 120.00091 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47139 * 60.00252 * 9 7 2 25 25 H 1.09005 * 109.47088 * 300.00525 * 9 7 2 26 26 H 1.07996 * 120.03424 * 359.97438 * 12 11 10 27 27 H 1.08003 * 119.95881 * 180.24424 * 13 12 11 28 28 H 1.08000 * 119.92324 * 179.76402 * 14 13 12 29 29 H 1.08003 * 119.96007 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.03632 * 180.02562 * 16 15 14 31 31 H 1.09000 * 110.72753 * 215.31933 * 19 17 10 32 32 H 1.09004 * 110.72449 * 338.60333 * 19 17 10 33 33 H 1.09004 * 110.66582 * 278.97963 * 20 19 17 34 34 H 1.08995 * 110.80971 * 155.91566 * 20 19 17 35 35 H 1.00905 * 110.99726 * 81.30558 * 21 20 19 36 36 H 1.08999 * 109.91708 * 265.96782 * 22 21 20 37 37 H 1.09005 * 109.91435 * 144.68361 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6568 -4.1435 -1.2101 12 6 3.4698 -5.2699 -1.2146 13 6 3.9128 -5.7950 -2.4126 14 6 3.5566 -5.1945 -3.6064 15 6 2.7518 -4.0701 -3.6052 16 6 2.3013 -3.5427 -2.4110 17 6 2.6788 -4.1695 1.2682 18 1 3.3382 -5.0178 1.0847 19 6 3.4130 -3.0842 2.0887 20 6 2.3146 -2.5809 3.0586 21 7 1.5680 -3.8191 3.3986 22 6 1.4872 -4.5985 2.1441 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.7522 -5.7364 -0.2824 27 1 4.5417 -6.6731 -2.4170 28 1 3.9076 -5.6050 -4.5416 29 1 2.4751 -3.6038 -4.5393 30 1 1.6724 -2.6647 -2.4108 31 1 4.2469 -3.5167 2.6415 32 1 3.7553 -2.2769 1.4413 33 1 1.6624 -1.8626 2.5618 34 1 2.7585 -2.1418 3.9520 35 1 2.0435 -4.3418 4.1189 36 1 0.5510 -4.3796 1.6306 37 1 1.5527 -5.6641 2.3642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086409942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:39 Heat of formation + Delta-G solvation = 25.213678 kcal Electronic energy + Delta-G solvation = -18317.799744 eV Core-core repulsion = 15673.213223 eV Total energy + Delta-G solvation = -2644.586521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81416 -39.14717 -36.17788 -34.61798 -31.86160 -30.85631 -30.07628 -29.82892 -27.45865 -24.93041 -23.25914 -22.69012 -22.14474 -20.34178 -18.73029 -18.55833 -17.30331 -16.84809 -16.58841 -15.91047 -15.31325 -15.12953 -14.91548 -14.44254 -14.41002 -14.12748 -13.71989 -13.33707 -13.18268 -12.90134 -12.74592 -12.64579 -12.58210 -12.26466 -11.99800 -11.89420 -11.78973 -11.59045 -11.15931 -10.58471 -10.49995 -9.67004 -9.52315 -8.30851 -7.79066 -6.27464 0.70117 0.91928 1.37079 1.38131 1.45605 2.34673 2.56402 3.13110 3.17133 3.39057 3.85981 3.96435 4.14431 4.24228 4.28087 4.40997 4.46298 4.56803 4.67586 4.76807 4.83768 4.89634 5.01082 5.07623 5.15593 5.21805 5.29638 5.36105 5.49483 5.63162 5.72814 5.77462 5.79740 5.89695 6.15331 6.24372 6.56251 6.62557 6.90586 6.99896 7.42068 8.89750 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.010148 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.478728 B = 2758.636300 C = 3976.533312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.050 0.950 9 C 0.275 3.725 10 N -0.611 5.611 11 C 0.211 3.789 12 C -0.220 4.220 13 C -0.072 4.072 14 C -0.197 4.197 15 C -0.082 4.082 16 C -0.219 4.219 17 C 0.121 3.879 18 H 0.108 0.892 19 C -0.160 4.160 20 C 0.048 3.952 21 N -0.676 5.676 22 C 0.038 3.962 23 H 0.263 0.737 24 H -0.005 1.005 25 H 0.016 0.984 26 H 0.133 0.867 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.347 0.653 36 H 0.049 0.951 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -10.874 1.205 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.154 3.846 10 N -0.318 5.318 11 C 0.106 3.894 12 C -0.243 4.243 13 C -0.091 4.091 14 C -0.217 4.217 15 C -0.101 4.101 16 C -0.242 4.242 17 C 0.016 3.984 18 H 0.125 0.875 19 C -0.200 4.200 20 C -0.082 4.082 21 N -0.304 5.304 22 C -0.093 4.093 23 H 0.072 0.928 24 H 0.013 0.987 25 H 0.034 0.966 26 H 0.151 0.849 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.164 0.836 36 H 0.068 0.932 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.243 -10.386 1.412 12.740 hybrid contribution 0.716 1.260 -0.274 1.475 sum 7.959 -9.126 1.138 12.162 Atomic orbital electron populations 1.70036 1.07308 1.27701 1.51650 1.25664 0.95454 1.02175 0.95178 0.85747 0.78473 0.79505 0.78809 1.20165 1.21000 1.19285 1.21617 0.92781 0.91443 1.49666 0.93133 1.18655 0.87390 0.83392 0.95191 1.46980 1.47186 1.35532 1.02122 1.18245 0.92651 0.92202 0.86257 1.20858 1.05357 0.98342 0.99729 1.21158 0.97552 0.99036 0.91344 1.21086 1.03391 0.98309 0.98955 1.21076 0.96357 0.96065 0.96620 1.20837 1.07632 1.02888 0.92802 1.22367 0.95843 0.96093 0.84128 0.87454 1.23407 0.98550 0.99213 0.98868 1.23006 0.93907 0.93270 0.97979 1.62604 1.53032 1.06525 1.08274 1.23080 0.97708 0.98199 0.90326 0.92780 0.98669 0.96572 0.84925 0.83426 0.84267 0.85614 0.88847 0.89191 0.91921 0.92556 0.89899 0.83613 0.93223 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 2 C 0.01 0.79 5.46 84.66 0.46 1.25 16 3 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.52 -27.93 7.33 25.60 0.19 -27.74 16 8 H 0.05 2.77 6.51 -2.91 -0.02 2.75 16 9 C 0.28 14.12 3.72 85.63 0.32 14.44 16 10 N -0.61 -25.69 2.51 -672.82 -1.69 -27.38 16 11 C 0.21 8.47 6.54 38.21 0.25 8.72 16 12 C -0.22 -7.07 9.31 22.40 0.21 -6.86 16 13 C -0.07 -1.99 10.04 22.25 0.22 -1.76 16 14 C -0.20 -5.63 10.04 22.29 0.22 -5.40 16 15 C -0.08 -2.83 10.04 22.25 0.22 -2.60 16 16 C -0.22 -9.23 9.16 22.40 0.21 -9.02 16 17 C 0.12 4.09 3.38 45.87 0.15 4.24 16 18 H 0.11 3.02 5.38 -2.39 -0.01 3.01 16 19 C -0.16 -5.38 6.13 31.80 0.20 -5.19 16 20 C 0.05 1.68 7.05 86.65 0.61 2.29 16 21 N -0.68 -21.10 7.51 -502.22 -3.77 -24.88 16 22 C 0.04 1.21 6.73 86.44 0.58 1.79 16 23 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 24 H 0.00 -0.27 6.46 -2.39 -0.02 -0.28 16 25 H 0.02 0.91 5.49 -2.38 -0.01 0.89 16 26 H 0.13 3.60 5.76 -2.91 -0.02 3.59 16 27 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.09 4.59 6.26 -2.91 -0.02 4.58 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.06 2.55 5.90 -2.38 -0.01 2.54 16 33 H 0.06 2.59 6.04 -2.39 -0.01 2.57 16 34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.35 8.27 8.92 -89.69 -0.80 7.47 16 36 H 0.05 1.96 6.65 -2.39 -0.02 1.95 16 37 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -62.91 289.37 0.98 -61.93 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.28 Total: 24.39 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 3.85 Total: -25.84 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -5.18 Total: -106.56 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.91 0.98 -61.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086409942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.144 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds