Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.47164 * 110.99478 * 170.00158 * 11 10 9 13 13 C 1.52883 * 108.50660 * 52.12216 * 12 11 10 14 14 C 1.50747 * 109.97290 * 50.42243 * 13 12 11 15 15 C 1.38747 * 118.41477 * 163.09448 * 14 13 12 16 16 C 1.37880 * 120.45841 * 179.83177 * 15 14 13 17 17 C 1.38934 * 119.75411 * 359.97438 * 16 15 14 18 18 N 1.39676 * 120.15398 * 180.02562 * 17 16 15 19 19 C 1.38692 * 119.70024 * 0.07813 * 17 16 15 20 20 C 1.37906 * 121.62332 * 343.02894 * 14 13 12 21 21 C 1.46622 * 111.00339 * 292.97303 * 11 10 9 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.09000 * 109.62963 * 171.82525 * 12 11 10 28 28 H 1.09001 * 109.63349 * 292.41061 * 12 11 10 29 29 H 1.09004 * 109.38861 * 170.57848 * 13 12 11 30 30 H 1.08998 * 109.38653 * 290.37103 * 13 12 11 31 31 H 1.08002 * 119.76929 * 359.81098 * 15 14 13 32 32 H 1.08003 * 120.12342 * 179.97438 * 16 15 14 33 33 H 0.97000 * 119.99547 * 359.97438 * 18 17 16 34 34 H 0.96991 * 120.00186 * 179.97438 * 18 17 16 35 35 H 1.08007 * 119.83282 * 180.02562 * 19 17 16 36 36 H 1.09003 * 109.27040 * 49.42060 * 21 11 10 37 37 H 1.08997 * 109.27344 * 168.89446 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4190 -6.0675 -0.2374 13 6 3.5783 -5.9776 0.7551 14 6 3.0459 -5.7993 2.1541 15 6 3.8963 -6.0507 3.2212 16 6 3.4543 -5.8977 4.5183 17 6 2.1484 -5.4885 4.7579 18 7 1.6920 -5.3303 6.0685 19 6 1.2995 -5.2388 3.6899 20 6 1.7482 -5.3956 2.3879 21 6 0.7859 -5.1219 1.2617 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 1.8820 -7.0044 -0.0893 28 1 2.8042 -6.0200 -1.2559 29 1 4.1683 -6.8929 0.7064 30 1 4.2091 -5.1265 0.4985 31 1 4.9114 -6.3687 3.0346 32 1 4.1208 -6.0952 5.3449 33 1 2.2872 -5.5066 6.8139 34 1 0.7801 -5.0442 6.2333 35 1 0.2840 -4.9202 3.8738 36 1 0.2162 -4.2202 1.4867 37 1 0.1009 -5.9637 1.1609 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087231219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = 18.605847 kcal Electronic energy + Delta-G solvation = -17787.545441 eV Core-core repulsion = 15142.672382 eV Total energy + Delta-G solvation = -2644.873058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08876 -37.46784 -34.25413 -33.00773 -31.98444 -30.71249 -28.91551 -27.70456 -25.26490 -23.60172 -22.27522 -22.09006 -20.85645 -18.50894 -16.83974 -16.58010 -16.30091 -15.29724 -14.83818 -14.64278 -14.34246 -14.22289 -13.57221 -13.46315 -13.12095 -12.74687 -12.16112 -12.10938 -11.87732 -11.62991 -11.24877 -11.17671 -10.87040 -10.79546 -10.52637 -10.38199 -9.96371 -9.73275 -9.29872 -9.06557 -8.43067 -8.25696 -7.65816 -7.25206 -5.94186 -3.95685 1.66634 1.83633 3.36812 3.40688 3.43496 3.94540 4.07355 4.46258 4.67313 5.02458 5.12395 5.23339 5.38433 5.41600 5.48749 5.60125 5.70689 5.86711 5.96608 6.07350 6.13113 6.20968 6.23922 6.32570 6.49794 6.53508 6.62692 6.68485 6.97861 7.07717 7.14429 7.57005 7.61190 7.64759 7.82207 7.85877 7.97595 8.15054 8.50685 9.11161 9.67268 11.17333 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.006444 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.848276 B = 4344.317989 C = 4933.864401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.052 0.948 9 C 0.029 3.971 10 C 0.057 3.943 11 N -0.527 5.527 12 C 0.052 3.948 13 C -0.109 4.109 14 C -0.131 4.131 15 C -0.073 4.073 16 C -0.203 4.203 17 C 0.209 3.791 18 N -0.883 5.883 19 C -0.190 4.190 20 C -0.049 4.049 21 C 0.084 3.916 22 H 0.260 0.740 23 H 0.023 0.977 24 H 0.016 0.984 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.394 0.606 34 H 0.396 0.604 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -13.755 8.220 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.557 4.557 8 H 0.070 0.930 9 C -0.009 4.009 10 C -0.069 4.069 11 N -0.248 5.248 12 C -0.077 4.077 13 C -0.148 4.148 14 C -0.134 4.134 15 C -0.092 4.092 16 C -0.225 4.225 17 C 0.106 3.894 18 N -0.422 5.422 19 C -0.214 4.214 20 C -0.051 4.051 21 C -0.044 4.044 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.221 0.779 34 H 0.224 0.776 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.043 -13.613 7.743 16.174 hybrid contribution 1.041 1.055 1.243 1.934 sum 5.084 -12.558 8.986 16.258 Atomic orbital electron populations 1.69962 1.05974 1.26560 1.50886 1.24973 0.94812 0.99055 0.95424 0.86689 0.79610 0.83306 0.78574 1.20231 1.21297 1.20364 1.21156 0.92911 0.91109 1.50557 0.92954 1.19089 0.94004 0.90201 0.97570 1.22386 0.97009 0.88274 0.99263 1.62749 1.27993 1.02904 1.31122 1.22198 0.92447 0.94793 0.98248 1.21001 0.99350 1.01888 0.92525 1.19301 0.93842 1.05162 0.95050 1.20750 0.98570 0.98163 0.91735 1.20406 0.94796 1.10256 0.97064 1.17671 0.92828 0.93903 0.85040 1.42398 1.16469 1.79287 1.04052 1.20488 0.99940 1.09654 0.91282 1.20245 0.94794 0.94940 0.95114 1.21252 0.94903 1.02657 0.85598 0.93030 0.95854 0.96565 0.92300 0.95192 0.91347 0.90631 0.91426 0.90721 0.86675 0.86833 0.77876 0.77591 0.86345 0.88359 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.76 4.94 -27.88 -0.14 0.63 16 10 C 0.06 1.25 3.86 -3.82 -0.01 1.24 16 11 N -0.53 -9.88 5.02 -236.19 -1.18 -11.06 16 12 C 0.05 0.79 6.02 -3.74 -0.02 0.76 16 13 C -0.11 -1.59 5.16 -27.92 -0.14 -1.74 16 14 C -0.13 -2.10 5.06 -104.53 -0.53 -2.63 16 15 C -0.07 -1.06 9.64 -39.52 -0.38 -1.44 16 16 C -0.20 -2.77 9.90 -39.45 -0.39 -3.16 16 17 C 0.21 2.93 6.75 -83.86 -0.57 2.37 16 18 N -0.88 -9.21 9.09 32.37 0.29 -8.92 16 19 C -0.19 -2.98 9.49 -39.28 -0.37 -3.36 16 20 C -0.05 -0.82 5.19 -104.64 -0.54 -1.36 16 21 C 0.08 1.49 5.43 -5.16 -0.03 1.46 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.45 6.38 -51.93 -0.33 0.12 16 25 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 26 H 0.03 0.67 5.90 -51.93 -0.31 0.37 16 27 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.17 7.05 -51.93 -0.37 0.80 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 33 H 0.39 3.23 8.84 -40.82 -0.36 2.87 16 34 H 0.40 3.58 8.84 -40.82 -0.36 3.22 16 35 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.10 1.94 6.08 -51.93 -0.32 1.62 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 296.30 15.07 4.47 4.47 Total: -1.00 -31.85 296.30 -9.63 -41.48 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.38 Total: 4.50 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.54 Total: -20.97 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.15 Total: -46.54 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.85 -9.63 -41.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087231219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.083 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds