Wall clock time and date at job start Mon Mar 30 2020 04:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99684 * 2 1 4 4 H 1.48507 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47465 * 300.00346 * 3 2 1 6 6 H 1.48508 * 109.47381 * 60.00450 * 3 2 1 7 7 C 1.37874 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00109 * 180.02562 * 10 9 7 12 12 O 1.21624 * 119.99474 * 0.02562 * 11 10 9 13 13 C 1.47222 * 120.00227 * 179.97438 * 11 10 9 14 14 N 1.30737 * 126.17352 * 359.97438 * 13 11 10 15 15 N 1.26257 * 116.26945 * 180.02562 * 14 13 11 16 16 C 1.30021 * 117.74031 * 0.02562 * 15 14 13 17 17 Cl 1.73607 * 125.55308 * 180.02562 * 16 15 14 18 18 S 1.71269 * 108.89796 * 359.97438 * 16 15 14 19 19 H 0.97000 * 120.00575 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47011 * 59.99812 * 9 7 2 21 21 H 1.08993 * 109.46818 * 300.00069 * 9 7 2 22 22 H 0.96997 * 120.00402 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6125 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5583 -5.1056 -0.0020 13 6 2.7108 -6.0023 -0.0016 14 7 4.0144 -5.9029 -0.0022 15 7 4.6576 -6.9893 -0.0031 16 6 3.9757 -8.0964 -0.0040 17 17 4.6489 -9.6966 -0.0047 18 16 2.3051 -7.7189 -0.0028 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 3.1568 -3.4353 -0.0009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087695244.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:18 Heat of formation + Delta-G solvation = 22.666403 kcal Electronic energy + Delta-G solvation = -12810.658750 eV Core-core repulsion = 10133.356597 eV Total energy + Delta-G solvation = -2677.302153 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 246.992 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.40702 -38.94927 -37.52889 -34.49854 -32.63234 -31.59862 -28.08214 -26.78959 -23.50465 -22.10266 -20.04877 -19.61225 -18.20797 -16.33490 -16.26412 -15.56620 -15.16776 -14.52225 -14.51553 -13.72600 -13.18528 -12.72551 -12.27360 -12.09066 -12.02246 -11.11191 -11.06391 -10.96612 -10.58355 -10.38077 -10.03592 -9.96057 -9.76372 -9.47702 -8.87007 -8.15642 -6.24502 -4.31945 -0.30895 0.01989 0.87899 1.30770 1.92291 3.21646 3.28811 3.29076 3.32462 3.50492 4.23707 4.36352 4.40218 5.12650 5.22984 7.02174 7.08108 7.32619 7.52366 7.83042 8.01453 8.30567 8.49431 8.78898 9.34645 10.85638 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.060630 B = 0.004491 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.703480 B = 6232.788791 C = 6679.348358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.246 3.754 10 N -0.670 5.670 11 C 0.576 3.424 12 O -0.533 6.533 13 C -0.026 4.026 14 N -0.203 5.203 15 N -0.248 5.248 16 C -0.001 4.001 17 Cl 0.055 6.945 18 S 0.283 5.717 19 H 0.267 0.733 20 H 0.037 0.963 21 H 0.037 0.963 22 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -16.838 -0.005 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.086 0.914 9 C 0.126 3.874 10 N -0.318 5.318 11 C 0.354 3.646 12 O -0.410 6.410 13 C -0.305 4.305 14 N -0.048 5.048 15 N -0.092 5.092 16 C -0.303 4.303 17 Cl 0.082 6.918 18 S 0.523 5.477 19 H 0.077 0.923 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.680 -16.843 -0.005 17.775 hybrid contribution 1.137 0.752 0.000 1.363 sum 6.816 -16.091 -0.005 17.475 Atomic orbital electron populations 1.69970 1.06132 1.27463 1.48660 1.24929 0.94935 0.99526 0.94416 0.86315 0.79951 0.82618 0.77806 1.19456 1.20715 1.20711 1.21234 0.93578 0.90012 1.53663 0.91426 1.19395 0.88102 0.81328 0.98552 1.46446 1.12684 1.04650 1.67999 1.16554 0.85895 0.81999 0.80131 1.90864 1.14128 1.84040 1.51976 1.30438 0.95611 0.98814 1.05640 1.72201 1.02770 1.17569 1.12268 1.71394 1.31039 0.92652 1.14091 1.29899 0.96401 0.95318 1.08645 1.98445 1.84946 1.12021 1.96386 1.85047 1.00423 0.99871 1.62364 0.92338 0.94529 0.94538 0.76082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.29 55.43 0.74 -24.51 14 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 14 3 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 14 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 14 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 7 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 14 8 H 0.07 1.70 7.60 -52.48 -0.40 1.30 14 9 C 0.25 6.24 5.43 -5.20 -0.03 6.21 14 10 N -0.67 -14.06 5.54 -62.63 -0.35 -14.41 14 11 C 0.58 11.35 7.81 -12.61 -0.10 11.25 14 12 O -0.53 -11.82 16.97 5.26 0.09 -11.73 14 13 C -0.03 -0.42 7.58 -14.37 -0.11 -0.53 14 14 N -0.20 -3.33 11.37 32.91 0.37 -2.96 14 15 N -0.25 -3.73 11.60 31.91 0.37 -3.36 14 16 C 0.00 -0.01 8.20 52.00 0.43 0.42 14 17 Cl 0.05 0.51 29.33 -51.86 -1.52 -1.01 14 18 S 0.28 3.43 23.15 -107.50 -2.49 0.94 14 19 H 0.27 7.13 8.31 -40.82 -0.34 6.79 14 20 H 0.04 1.01 8.14 -51.93 -0.42 0.58 14 21 H 0.04 1.00 8.14 -51.93 -0.42 0.58 14 22 H 0.40 7.77 8.01 -40.82 -0.33 7.45 14 LS Contribution 246.06 15.07 3.71 3.71 Total: -1.00 -29.25 246.06 -5.03 -34.29 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -0.71 Total: -0.70 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.23 Total: 4.27 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 1.13 Total: -45.23 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.49 Total: 0.94 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -1.52 Total: -1.01 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.25 -5.03 -34.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087695244.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.953 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds