Wall clock time and date at job start Mon Mar 30 2020 04:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99684 * 2 1 4 4 H 1.48507 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47465 * 300.00346 * 3 2 1 6 6 H 1.48508 * 109.47381 * 60.00450 * 3 2 1 7 7 C 1.37874 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00109 * 180.02562 * 10 9 7 12 12 O 1.21624 * 119.99474 * 0.02562 * 11 10 9 13 13 C 1.47222 * 120.00227 * 179.97438 * 11 10 9 14 14 N 1.30737 * 126.17352 * 359.97438 * 13 11 10 15 15 N 1.26257 * 116.26945 * 180.02562 * 14 13 11 16 16 C 1.30021 * 117.74031 * 0.02562 * 15 14 13 17 17 Cl 1.73607 * 125.55308 * 180.02562 * 16 15 14 18 18 S 1.71269 * 108.89796 * 359.97438 * 16 15 14 19 19 H 0.97000 * 120.00575 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47011 * 59.99812 * 9 7 2 21 21 H 1.08993 * 109.46818 * 300.00069 * 9 7 2 22 22 H 0.96997 * 120.00402 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6125 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5583 -5.1056 -0.0020 13 6 2.7108 -6.0023 -0.0016 14 7 4.0144 -5.9029 -0.0022 15 7 4.6576 -6.9893 -0.0031 16 6 3.9757 -8.0964 -0.0040 17 17 4.6489 -9.6966 -0.0047 18 16 2.3051 -7.7189 -0.0028 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 3.1568 -3.4353 -0.0009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087695244.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:18 Heat of formation + Delta-G solvation = 0.440945 kcal Electronic energy + Delta-G solvation = -12811.622518 eV Core-core repulsion = 10133.356597 eV Total energy + Delta-G solvation = -2678.265921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 246.992 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.58087 -40.58572 -38.43566 -36.35019 -34.52629 -32.91673 -29.72276 -28.31013 -25.21056 -23.68087 -21.54769 -20.76074 -19.70303 -18.14093 -17.48005 -17.25165 -16.58364 -16.29642 -16.13269 -14.91592 -14.79397 -14.13482 -14.08767 -13.55249 -13.19584 -12.95590 -12.75675 -12.33180 -12.20914 -11.68883 -11.47146 -11.33584 -11.16664 -11.00402 -10.84594 -10.04259 -8.30498 -6.46273 -1.45972 -1.03565 -0.21954 0.30090 0.71150 1.45441 1.45704 1.59402 1.77429 2.02092 2.40070 2.93538 3.05407 3.30509 3.78845 5.00703 5.18960 5.26543 5.54727 5.79056 6.47846 6.60911 6.91175 6.99226 7.26879 8.81510 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.060630 B = 0.004491 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.703480 B = 6232.788791 C = 6679.348358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.560 4.560 8 H 0.080 0.920 9 C 0.263 3.737 10 N -0.673 5.673 11 C 0.585 3.415 12 O -0.563 6.563 13 C -0.066 4.066 14 N -0.208 5.208 15 N -0.270 5.270 16 C 0.006 3.994 17 Cl 0.089 6.911 18 S 0.366 5.634 19 H 0.271 0.729 20 H 0.007 0.993 21 H 0.007 0.993 22 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 -17.966 -0.005 19.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.598 4.598 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.322 5.322 11 C 0.365 3.635 12 O -0.442 6.442 13 C -0.344 4.344 14 N -0.055 5.055 15 N -0.115 5.115 16 C -0.295 4.295 17 Cl 0.116 6.884 18 S 0.607 5.393 19 H 0.080 0.920 20 H 0.025 0.975 21 H 0.025 0.975 22 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.210 -18.017 -0.006 19.407 hybrid contribution 0.672 0.834 0.000 1.071 sum 7.882 -17.183 -0.006 18.905 Atomic orbital electron populations 1.70101 1.07985 1.28664 1.49662 1.25928 0.95751 1.03476 0.93689 0.85163 0.78996 0.77590 0.77816 1.18137 1.20298 1.20287 1.21597 0.94309 0.90514 1.53388 0.90165 1.18862 0.88305 0.82992 0.95753 1.46143 1.12367 1.04596 1.69109 1.16760 0.86077 0.82269 0.78367 1.90836 1.15731 1.84696 1.52937 1.29659 0.95315 1.00158 1.09242 1.72193 1.02877 1.18831 1.11578 1.71417 1.31235 0.93031 1.15839 1.30224 0.97105 0.96116 1.06022 1.98471 1.84583 1.09369 1.95956 1.84802 0.98948 0.95602 1.59998 0.92049 0.97524 0.97531 0.75008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.96 13.29 21.45 0.28 -53.67 14 2 C 0.01 0.65 5.46 84.65 0.46 1.11 14 3 Si 0.98 41.85 29.54 68.60 2.03 43.88 14 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 14 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 14 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 14 7 C -0.56 -30.02 9.28 25.60 0.24 -29.78 14 8 H 0.08 4.00 7.60 -2.91 -0.02 3.98 14 9 C 0.26 13.88 5.43 85.63 0.46 14.34 14 10 N -0.67 -29.01 5.54 -470.32 -2.61 -31.61 14 11 C 0.58 23.41 7.81 86.60 0.68 24.09 14 12 O -0.56 -25.55 16.97 -4.11 -0.07 -25.62 14 13 C -0.07 -2.08 7.58 87.22 0.66 -1.42 14 14 N -0.21 -6.63 11.37 -49.78 -0.57 -7.19 14 15 N -0.27 -7.65 11.60 -52.97 -0.61 -8.27 14 16 C 0.01 0.14 8.20 130.51 1.07 1.21 14 17 Cl 0.09 1.38 29.33 -2.72 -0.08 1.30 14 18 S 0.37 8.04 23.15 -56.49 -1.31 6.73 14 19 H 0.27 14.68 8.31 -92.71 -0.77 13.91 14 20 H 0.01 0.39 8.14 -2.39 -0.02 0.38 14 21 H 0.01 0.39 8.14 -2.39 -0.02 0.37 14 22 H 0.41 16.11 8.01 -92.71 -0.74 15.37 14 Total: -1.00 -63.55 246.06 1.18 -62.37 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 0.55 Total: 2.54 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 3.57 Total: 9.54 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -3.50 Total: -100.75 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.07 Total: -25.62 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 8.04 SS G_CDS: -1.31 Total: 6.73 kcal Atomic # 17 Polarization: 1.38 SS G_CDS: -0.08 Total: 1.30 kcal Total: -63.55 1.18 -62.37 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087695244.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.807 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds