Wall clock time and date at job start Mon Mar 30 2020 04:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46957 * 110.99536 * 2 1 4 4 C 1.53052 * 109.35885 * 176.81101 * 3 2 1 5 5 N 1.46949 * 109.36557 * 58.40274 * 4 3 2 6 6 C 1.46952 * 110.88407 * 300.67603 * 5 4 3 7 7 H 1.09002 * 109.50432 * 299.34656 * 6 5 4 8 8 C 1.50697 * 109.49448 * 179.28504 * 6 5 4 9 9 C 1.38643 * 119.74877 * 140.10949 * 8 6 5 10 10 C 1.37613 * 120.24721 * 180.02562 * 9 8 6 11 11 C 1.40709 * 119.74697 * 359.97102 * 10 9 8 12 12 C 1.41399 * 120.24578 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00010 * 335.72332 * 12 11 10 14 14 C 1.39946 * 119.99947 * 155.72470 * 12 11 10 15 15 N 1.30821 * 120.00035 * 342.29492 * 14 12 11 16 16 Si 1.86801 * 119.99891 * 162.30023 * 14 12 11 17 17 H 1.48503 * 109.46816 * 269.99556 * 16 14 12 18 18 H 1.48491 * 109.47175 * 29.99743 * 16 14 12 19 19 H 1.48496 * 109.47127 * 149.99732 * 16 14 12 20 20 C 1.40719 * 119.51207 * 0.28087 * 11 10 9 21 21 C 1.37617 * 119.74178 * 359.48807 * 20 11 10 22 22 C 1.46949 * 111.00119 * 236.20155 * 2 1 3 23 23 H 1.09002 * 109.46657 * 183.80177 * 1 2 3 24 24 H 1.09001 * 109.47110 * 303.79444 * 1 2 3 25 25 H 1.08997 * 109.47084 * 63.79809 * 1 2 3 26 26 H 1.08993 * 109.49260 * 296.77785 * 3 2 1 27 27 H 1.08997 * 109.49131 * 56.82665 * 3 2 1 28 28 H 1.09003 * 109.49002 * 178.37154 * 4 3 2 29 29 H 1.09001 * 109.49124 * 298.41017 * 4 3 2 30 30 H 1.00906 * 111.00055 * 176.80774 * 5 4 3 31 31 H 1.07997 * 119.87202 * 0.02562 * 9 8 6 32 32 H 1.08004 * 120.12624 * 179.97438 * 10 9 8 33 33 H 0.97004 * 120.00360 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.12475 * 179.72303 * 20 11 10 35 35 H 1.07999 * 119.87173 * 180.22839 * 21 20 11 36 36 H 1.09000 * 109.49277 * 63.21445 * 22 2 1 37 37 H 1.09004 * 109.50652 * 303.16874 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0500 0.5660 -1.0597 6 6 3.5235 -0.8060 -1.0598 7 1 3.8254 -1.3117 -0.1426 8 6 4.0687 -1.5538 -2.2491 9 6 4.4516 -2.8792 -2.1119 10 6 4.9512 -3.5717 -3.1911 11 6 5.0721 -2.9297 -4.4374 12 6 5.5836 -3.6313 -5.5533 13 1 6.2299 -4.4839 -5.4053 14 6 5.2524 -3.2211 -6.8497 15 7 4.2244 -2.4358 -7.0446 16 14 6.2782 -3.7948 -8.3016 17 1 7.3782 -2.8270 -8.5436 18 1 6.8516 -5.1320 -8.0049 19 1 5.4201 -3.8813 -9.5105 20 6 4.6853 -1.5826 -4.5636 21 6 4.1839 -0.9111 -3.4721 22 6 1.9957 -0.7631 -1.1400 23 1 -0.3633 -1.0255 0.0681 24 1 -0.3633 0.5716 0.8540 25 1 -0.3633 0.4537 -0.9220 26 1 1.6937 1.8774 -0.9173 27 1 1.6010 1.9130 0.8600 28 1 3.9178 2.3449 0.0513 29 1 3.8253 0.8483 1.0108 30 1 5.0591 0.5660 -1.0597 31 1 4.3574 -3.3700 -1.1545 32 1 5.2493 -4.6040 -3.0819 33 1 3.9950 -2.1511 -7.9431 34 1 4.7781 -1.0789 -5.5144 35 1 3.8829 0.1217 -3.5675 36 1 1.6938 -0.2821 -2.0704 37 1 1.6013 -1.7789 -1.1114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107089809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:52 Heat of formation + Delta-G solvation = 22.396057 kcal Electronic energy + Delta-G solvation = -17601.719262 eV Core-core repulsion = 14957.010559 eV Total energy + Delta-G solvation = -2644.708703 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.03548 -37.21728 -34.44907 -33.46768 -31.36315 -29.24284 -28.77816 -27.41979 -25.34467 -23.24897 -22.65598 -20.99520 -20.16716 -19.02459 -17.25689 -16.36460 -15.34853 -14.90986 -14.74525 -14.38891 -14.28583 -13.98326 -13.61761 -13.09709 -12.77890 -12.40042 -12.02242 -11.93046 -11.82112 -11.60988 -11.33613 -11.12390 -11.04057 -10.89641 -10.58375 -10.28388 -10.27463 -9.51134 -9.31166 -9.11183 -8.27760 -7.98703 -7.39125 -7.28394 -6.74026 -4.33174 2.76989 3.07913 3.11410 3.12222 3.20772 3.94326 4.11850 4.52434 4.68697 5.12405 5.22302 5.39442 5.48995 5.56328 5.65765 5.78166 5.82991 5.84086 5.89190 6.01560 6.09166 6.30869 6.33972 6.50259 6.53175 7.02515 7.08931 7.15014 7.17689 7.27554 7.37899 7.49492 7.66685 7.73163 7.94637 8.09552 8.23523 8.34033 8.68673 8.92435 9.01388 10.20313 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041814 B = 0.004913 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.473209 B = 5697.862901 C = 5747.826961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.057 3.943 4 C 0.059 3.941 5 N -0.684 5.684 6 C 0.158 3.842 7 H 0.035 0.965 8 C -0.217 4.217 9 C -0.083 4.083 10 C -0.229 4.229 11 C 0.113 3.887 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.792 5.792 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.263 1.263 19 H -0.278 1.278 20 C -0.172 4.172 21 C -0.071 4.071 22 C 0.068 3.932 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.024 0.976 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.345 0.655 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.280 0.720 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 5.603 8.633 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.072 4.072 4 C -0.071 4.071 5 N -0.316 5.316 6 C 0.049 3.951 7 H 0.053 0.947 8 C -0.219 4.219 9 C -0.102 4.102 10 C -0.248 4.248 11 C 0.110 3.890 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.418 5.418 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.187 1.187 19 H -0.204 1.204 20 C -0.191 4.191 21 C -0.090 4.090 22 C -0.060 4.060 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.163 0.837 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.765 5.718 8.438 10.866 hybrid contribution 0.512 -0.274 -0.757 0.954 sum -3.254 5.444 7.680 9.961 Atomic orbital electron populations 1.22320 0.87822 1.02035 1.00066 1.62218 1.07377 1.13704 1.44141 1.22135 0.95109 0.89584 1.00328 1.21932 0.94399 0.98170 0.92572 1.60542 1.13371 1.14875 1.42771 1.20023 0.92387 0.87016 0.95680 0.94707 1.18863 1.14058 0.94867 0.94147 1.20363 0.99312 0.93781 0.96763 1.20913 1.10960 0.98405 0.94561 1.17644 0.88225 0.91454 0.91637 1.19613 1.26685 1.12946 0.90112 0.90530 1.25902 0.93850 0.93686 1.00679 1.69834 1.20733 1.27247 1.23950 0.86334 0.80439 0.80191 0.79879 1.19279 1.18652 1.20355 1.21345 1.05384 0.94621 0.97786 1.20508 0.98407 0.97851 0.92221 1.22280 0.95105 0.97761 0.90845 0.91471 0.91852 0.95753 0.94274 0.91081 0.90885 0.94961 0.83702 0.89727 0.89159 0.90923 0.86617 0.88677 0.93980 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.60 60.07 0.58 0.90 16 2 N -0.55 -8.14 4.97 -242.76 -1.21 -9.35 16 3 C 0.06 0.76 5.62 -3.77 -0.02 0.74 16 4 C 0.06 0.80 6.72 -3.77 -0.03 0.77 16 5 N -0.68 -11.14 5.76 -107.82 -0.62 -11.76 16 6 C 0.16 2.87 2.78 -68.81 -0.19 2.68 16 7 H 0.03 0.64 7.99 -51.93 -0.42 0.23 16 8 C -0.22 -4.69 4.92 -104.33 -0.51 -5.20 16 9 C -0.08 -1.86 9.64 -39.66 -0.38 -2.25 16 10 C -0.23 -5.64 9.80 -38.88 -0.38 -6.02 16 11 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 12 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 13 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 14 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 15 N -0.79 -20.66 10.95 55.55 0.61 -20.05 16 16 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 C -0.17 -4.49 8.70 -38.87 -0.34 -4.83 16 21 C -0.07 -1.66 9.29 -39.66 -0.37 -2.03 16 22 C 0.07 1.17 4.88 -3.77 -0.02 1.16 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.34 5.45 8.82 -39.29 -0.35 5.10 16 31 H 0.08 1.69 8.03 -52.49 -0.42 1.27 16 32 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 33 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 34 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 35 H 0.10 2.14 7.70 -52.49 -0.40 1.73 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -27.25 300.53 -10.10 -37.35 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.69 Total: 8.11 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.69 Total: -22.55 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -1.22 Total: -41.17 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.25 -10.10 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107089809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.741 kcal (2) G-P(sol) polarization free energy of solvation -27.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds