Wall clock time and date at job start Mon Mar 30 2020 04:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46957 * 110.99536 * 2 1 4 4 C 1.53052 * 109.35885 * 176.81101 * 3 2 1 5 5 N 1.46949 * 109.36557 * 58.40274 * 4 3 2 6 6 C 1.46952 * 110.88407 * 300.67603 * 5 4 3 7 7 H 1.09002 * 109.50432 * 299.34656 * 6 5 4 8 8 C 1.50697 * 109.49448 * 179.28504 * 6 5 4 9 9 C 1.38643 * 119.74877 * 140.10949 * 8 6 5 10 10 C 1.37613 * 120.24721 * 180.02562 * 9 8 6 11 11 C 1.40709 * 119.74697 * 359.97102 * 10 9 8 12 12 C 1.41399 * 120.24578 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00010 * 335.72332 * 12 11 10 14 14 C 1.39946 * 119.99947 * 155.72470 * 12 11 10 15 15 N 1.30821 * 120.00035 * 342.29492 * 14 12 11 16 16 Si 1.86801 * 119.99891 * 162.30023 * 14 12 11 17 17 H 1.48503 * 109.46816 * 269.99556 * 16 14 12 18 18 H 1.48491 * 109.47175 * 29.99743 * 16 14 12 19 19 H 1.48496 * 109.47127 * 149.99732 * 16 14 12 20 20 C 1.40719 * 119.51207 * 0.28087 * 11 10 9 21 21 C 1.37617 * 119.74178 * 359.48807 * 20 11 10 22 22 C 1.46949 * 111.00119 * 236.20155 * 2 1 3 23 23 H 1.09002 * 109.46657 * 183.80177 * 1 2 3 24 24 H 1.09001 * 109.47110 * 303.79444 * 1 2 3 25 25 H 1.08997 * 109.47084 * 63.79809 * 1 2 3 26 26 H 1.08993 * 109.49260 * 296.77785 * 3 2 1 27 27 H 1.08997 * 109.49131 * 56.82665 * 3 2 1 28 28 H 1.09003 * 109.49002 * 178.37154 * 4 3 2 29 29 H 1.09001 * 109.49124 * 298.41017 * 4 3 2 30 30 H 1.00906 * 111.00055 * 176.80774 * 5 4 3 31 31 H 1.07997 * 119.87202 * 0.02562 * 9 8 6 32 32 H 1.08004 * 120.12624 * 179.97438 * 10 9 8 33 33 H 0.97004 * 120.00360 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.12475 * 179.72303 * 20 11 10 35 35 H 1.07999 * 119.87173 * 180.22839 * 21 20 11 36 36 H 1.09000 * 109.49277 * 63.21445 * 22 2 1 37 37 H 1.09004 * 109.50652 * 303.16874 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0500 0.5660 -1.0597 6 6 3.5235 -0.8060 -1.0598 7 1 3.8254 -1.3117 -0.1426 8 6 4.0687 -1.5538 -2.2491 9 6 4.4516 -2.8792 -2.1119 10 6 4.9512 -3.5717 -3.1911 11 6 5.0721 -2.9297 -4.4374 12 6 5.5836 -3.6313 -5.5533 13 1 6.2299 -4.4839 -5.4053 14 6 5.2524 -3.2211 -6.8497 15 7 4.2244 -2.4358 -7.0446 16 14 6.2782 -3.7948 -8.3016 17 1 7.3782 -2.8270 -8.5436 18 1 6.8516 -5.1320 -8.0049 19 1 5.4201 -3.8813 -9.5105 20 6 4.6853 -1.5826 -4.5636 21 6 4.1839 -0.9111 -3.4721 22 6 1.9957 -0.7631 -1.1400 23 1 -0.3633 -1.0255 0.0681 24 1 -0.3633 0.5716 0.8540 25 1 -0.3633 0.4537 -0.9220 26 1 1.6937 1.8774 -0.9173 27 1 1.6010 1.9130 0.8600 28 1 3.9178 2.3449 0.0513 29 1 3.8253 0.8483 1.0108 30 1 5.0591 0.5660 -1.0597 31 1 4.3574 -3.3700 -1.1545 32 1 5.2493 -4.6040 -3.0819 33 1 3.9950 -2.1511 -7.9431 34 1 4.7781 -1.0789 -5.5144 35 1 3.8829 0.1217 -3.5675 36 1 1.6938 -0.2821 -2.0704 37 1 1.6013 -1.7789 -1.1114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107089809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:51 Heat of formation + Delta-G solvation = 5.080474 kcal Electronic energy + Delta-G solvation = -17602.470122 eV Core-core repulsion = 14957.010559 eV Total energy + Delta-G solvation = -2645.459563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43244 -38.91534 -35.98574 -35.03671 -32.88802 -31.15019 -30.45048 -28.54978 -27.10369 -24.39261 -24.17243 -22.86864 -21.78816 -20.42922 -19.19603 -17.68859 -17.16458 -16.19813 -16.06567 -15.82688 -15.63964 -15.44670 -15.10074 -14.69018 -14.41411 -13.98614 -13.72104 -13.43700 -13.10607 -12.97834 -12.83986 -12.79457 -12.49601 -12.41529 -12.03126 -11.87224 -11.73487 -11.32063 -11.16267 -10.98989 -9.48248 -9.30502 -9.26181 -9.17664 -8.62630 -6.32550 0.96521 1.18083 1.37963 1.51270 1.52140 2.21165 2.70689 3.00284 3.32608 3.74228 4.02030 4.13896 4.21947 4.33426 4.42733 4.46475 4.55199 4.60872 4.64401 4.68933 4.79859 4.89370 4.97100 5.05580 5.08512 5.12227 5.17231 5.40643 5.48253 5.74010 5.94411 5.96212 6.03669 6.10492 6.14901 6.39630 6.41413 6.55430 6.73854 6.96128 7.06425 8.34262 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041814 B = 0.004913 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.473209 B = 5697.862901 C = 5747.826961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.054 3.946 4 C 0.060 3.940 5 N -0.694 5.694 6 C 0.165 3.835 7 H 0.039 0.961 8 C -0.202 4.202 9 C -0.084 4.084 10 C -0.243 4.243 11 C 0.081 3.919 12 C -0.503 4.503 13 H 0.074 0.926 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.258 1.258 19 H -0.268 1.268 20 C -0.195 4.195 21 C -0.070 4.070 22 C 0.075 3.925 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.020 0.980 26 H 0.028 0.972 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.038 0.962 30 H 0.347 0.653 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.287 0.713 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.019 0.981 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 6.302 10.059 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.074 4.074 4 C -0.069 4.069 5 N -0.326 5.326 6 C 0.055 3.945 7 H 0.057 0.943 8 C -0.204 4.204 9 C -0.103 4.103 10 C -0.263 4.263 11 C 0.079 3.921 12 C -0.532 4.532 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.803 3.197 17 H -0.187 1.187 18 H -0.182 1.182 19 H -0.192 1.192 20 C -0.215 4.215 21 C -0.089 4.089 22 C -0.054 4.054 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.165 0.835 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.037 0.963 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.050 6.429 9.891 12.472 hybrid contribution 0.516 -0.409 -1.035 1.227 sum -3.534 6.021 8.856 11.276 Atomic orbital electron populations 1.22411 0.86190 1.02766 1.00966 1.62239 1.08912 1.14385 1.42261 1.22263 0.95100 0.88881 1.01118 1.22056 0.94473 0.98912 0.91490 1.60497 1.13653 1.13762 1.44712 1.19885 0.92940 0.87861 0.93815 0.94270 1.19241 1.11631 0.94794 0.94739 1.20683 0.98193 0.94088 0.97342 1.21121 1.11495 0.98971 0.94705 1.17974 0.89342 0.92015 0.92799 1.19857 1.28096 1.13886 0.91401 0.90773 1.26754 0.94543 0.93522 1.03094 1.69891 1.22001 1.28344 1.25038 0.85210 0.78635 0.79734 0.76160 1.18693 1.18177 1.19248 1.21293 1.07335 0.94890 0.97954 1.20589 0.97864 0.98096 0.92318 1.22072 0.94454 0.97822 0.91017 0.91176 0.89367 0.96127 0.95346 0.88139 0.88539 0.94407 0.83489 0.86788 0.88599 0.90232 0.88555 0.88023 0.96251 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.60 127.69 1.23 1.76 16 2 N -0.55 -14.98 4.97 -921.94 -4.58 -19.55 16 3 C 0.05 1.29 5.62 86.31 0.49 1.77 16 4 C 0.06 1.43 6.72 86.31 0.58 2.01 16 5 N -0.69 -21.28 5.76 -495.03 -2.85 -24.14 16 6 C 0.16 5.71 2.78 44.18 0.12 5.83 16 7 H 0.04 1.35 7.99 -2.39 -0.02 1.33 16 8 C -0.20 -8.60 4.92 -19.68 -0.10 -8.69 16 9 C -0.08 -3.72 9.64 22.22 0.21 -3.50 16 10 C -0.24 -12.18 9.80 22.73 0.22 -11.96 16 11 C 0.08 4.48 5.57 -21.29 -0.12 4.37 16 12 C -0.50 -27.85 9.05 23.46 0.21 -27.64 16 13 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 14 C 0.04 1.83 5.14 85.26 0.44 2.27 16 15 N -0.83 -44.47 10.95 21.83 0.24 -44.23 16 16 Si 0.98 39.01 29.59 68.60 2.03 41.04 16 17 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 C -0.20 -10.58 8.70 22.73 0.20 -10.38 16 21 C -0.07 -3.32 9.29 22.22 0.21 -3.11 16 22 C 0.07 2.49 4.88 86.31 0.42 2.91 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 1.51 8.13 -2.39 -0.02 1.49 16 25 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.10 1.82 8.13 -2.39 -0.02 1.80 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.35 10.33 8.82 -89.69 -0.79 9.54 16 31 H 0.11 4.31 8.03 -2.91 -0.02 4.29 16 32 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 33 H 0.29 13.95 8.30 -92.71 -0.77 13.19 16 34 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 35 H 0.10 4.61 7.70 -2.91 -0.02 4.59 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -59.89 300.53 -0.80 -60.69 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.26 Total: 30.55 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 4.11 Total: -44.37 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -7.19 Total: -87.92 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -59.89 -0.80 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107089809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.767 kcal (2) G-P(sol) polarization free energy of solvation -59.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds